Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32567 * 121.64507 * 2 1 4 4 S 1.77222 * 105.32135 * 180.19177 * 3 2 1 5 5 C 1.72213 * 94.84880 * 359.76191 * 4 3 2 6 6 O 1.21827 * 127.05723 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88176 * 0.02562 * 5 4 3 8 8 C 1.46496 * 121.37743 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47238 * 90.02432 * 8 7 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72561 * 10 9 8 13 13 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47161 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46950 * 294.99632 * 14 13 12 16 16 N 1.46495 * 109.47319 * 54.99451 * 14 13 12 17 17 C 1.36939 * 120.00111 * 205.00133 * 16 14 13 18 18 H 1.08004 * 119.99680 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00065 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00211 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46782 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47293 * 119.99215 * 21 19 17 24 24 H 1.48494 * 109.47130 * 239.99762 * 21 19 17 25 25 C 1.53005 * 109.47013 * 174.99834 * 14 13 12 26 26 C 1.52997 * 117.49559 * 248.74134 * 25 14 13 27 27 C 1.52996 * 117.49574 * 180.08524 * 25 14 13 28 28 H 1.08994 * 109.47317 * 270.24099 * 1 2 3 29 29 H 1.08994 * 109.47222 * 30.25326 * 1 2 3 30 30 H 1.09008 * 109.46764 * 150.24446 * 1 2 3 31 31 H 1.08002 * 127.34156 * 359.92730 * 3 2 1 32 32 H 1.09000 * 109.47435 * 330.02336 * 8 7 5 33 33 H 1.09002 * 109.46784 * 210.01972 * 8 7 5 34 34 H 1.09001 * 109.47671 * 59.99927 * 9 8 7 35 35 H 1.08998 * 109.47454 * 299.99925 * 9 8 7 36 36 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.46587 * 299.99661 * 13 12 10 38 38 H 1.08998 * 109.47213 * 59.99069 * 13 12 10 39 39 H 0.97001 * 119.99963 * 25.00675 * 16 14 13 40 40 H 0.97003 * 120.00653 * 180.02562 * 20 19 17 41 41 H 1.08997 * 115.54685 * 34.41738 * 25 14 13 42 42 H 1.09000 * 117.50311 * 0.02562 * 26 25 14 43 43 H 1.09006 * 117.49529 * 145.02134 * 26 25 14 44 44 H 1.09007 * 117.49701 * 214.97750 * 27 25 14 45 45 H 1.09001 * 117.50142 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6305 -0.0057 5 6 3.5607 -1.0572 -0.0006 6 8 4.3675 -1.9701 -0.0013 7 7 2.2222 -1.1604 0.0045 8 6 1.5578 -2.4660 0.0093 9 6 1.3312 -2.9176 1.4535 10 6 0.6471 -4.2605 1.4585 11 8 0.3680 -4.8026 0.4101 12 7 0.3502 -4.8611 2.6278 13 6 -0.3143 -6.1668 2.6327 14 6 -0.5343 -6.6217 4.0767 15 1 0.4304 -6.7874 4.5565 16 7 -1.2719 -5.5881 4.8074 17 6 -1.1563 -5.4976 6.1689 18 1 -0.5217 -6.1886 6.7040 19 6 -1.8556 -4.5186 6.8612 20 7 -2.6293 -3.6770 6.2091 21 14 -1.6975 -4.3947 8.7184 22 1 -0.7732 -5.4489 9.2079 23 1 -1.1615 -3.0583 9.0815 24 1 -3.0324 -4.5788 9.3422 25 6 -1.3380 -7.9237 4.0845 26 6 -2.7681 -7.8677 4.6252 27 6 -1.6657 -8.5434 5.4444 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8876 -0.5177 30 1 -0.3633 -0.8922 -0.5101 31 1 1.8152 2.1368 -0.0011 32 1 2.1845 -3.1946 -0.5051 33 1 0.5982 -2.3872 -0.5015 34 1 0.7045 -2.1891 1.9679 35 1 2.2908 -2.9964 1.9644 36 1 0.5770 -4.4293 3.4663 37 1 -1.2761 -6.0868 2.1260 38 1 0.3102 -6.8942 2.1140 39 1 -1.8421 -4.9679 4.3267 40 1 -3.1178 -2.9926 6.6928 41 1 -1.1392 -8.6037 3.2562 42 1 -3.1367 -6.9034 4.9750 43 1 -3.5103 -8.5114 4.1527 44 1 -1.6830 -9.6313 5.5106 45 1 -1.3084 -8.0239 6.3335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713869050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -3.423870 kcal Electronic energy + Delta-G solvation = -27015.863634 eV Core-core repulsion = 23161.558250 eV Total energy + Delta-G solvation = -3854.305385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26798 -39.47415 -37.78661 -37.65803 -34.60059 -33.55709 -33.32116 -31.56362 -30.85136 -28.81747 -27.80246 -25.22797 -23.83675 -23.31823 -22.39772 -21.53737 -20.54974 -20.16085 -19.10253 -18.27314 -17.69743 -17.30271 -16.62890 -16.24869 -15.79761 -15.55437 -15.13140 -15.02393 -14.66790 -14.52587 -14.00186 -13.93412 -13.85576 -13.75750 -13.32671 -13.03138 -12.91359 -12.87638 -12.48090 -12.07760 -11.63321 -11.44262 -11.35791 -11.28960 -11.22550 -10.95220 -10.91329 -10.57407 -10.25893 -10.14925 -9.94815 -9.77128 -9.68569 -9.48968 -9.21922 -9.05587 -8.73312 -8.17054 -7.14515 -5.91611 -3.21582 0.75416 1.15380 1.57730 1.94599 2.50477 2.78748 3.33274 3.40710 3.42123 3.47210 4.25548 4.43573 4.54634 4.58264 4.59427 4.80474 4.95866 5.09807 5.14600 5.25713 5.30032 5.31740 5.39407 5.43042 5.47901 5.52605 5.68782 5.74661 5.79503 5.90677 5.91980 5.99188 6.01999 6.34288 6.39152 6.52547 6.59404 6.67664 6.81369 6.95213 7.11388 7.22164 7.59625 7.79667 8.25671 8.41832 9.38486 9.91453 10.27872 11.29899 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.002682 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.225873 B =10436.408017 C =11666.878948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.107 3.893 3 C -0.242 4.242 4 S -0.006 6.006 5 C 0.480 3.520 6 O -0.471 6.471 7 N -0.532 5.532 8 C 0.118 3.882 9 C -0.158 4.158 10 C 0.518 3.482 11 O -0.556 6.556 12 N -0.708 5.708 13 C 0.119 3.881 14 C 0.191 3.809 15 H 0.057 0.943 16 N -0.717 5.717 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.178 4.178 26 C -0.162 4.162 27 C -0.175 4.175 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.191 0.809 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 7.317 -12.365 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.004 4.004 3 C -0.380 4.380 4 S 0.236 5.764 5 C 0.162 3.838 6 O -0.351 6.351 7 N -0.253 5.253 8 C -0.007 4.007 9 C -0.199 4.199 10 C 0.303 3.697 11 O -0.435 6.435 12 N -0.359 5.359 13 C -0.006 4.006 14 C 0.081 3.919 15 H 0.075 0.925 16 N -0.359 5.359 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.200 4.200 26 C -0.200 4.200 27 C -0.212 4.212 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.209 0.791 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.248 0.752 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.514 6.984 -12.914 16.493 hybrid contribution -1.347 -0.283 1.474 2.017 sum 6.167 6.702 -11.440 14.622 Atomic orbital electron populations 1.20866 0.86391 1.04653 1.04590 1.19523 0.96022 0.84851 0.99957 1.24876 0.92982 1.01327 1.18842 1.85133 1.08786 1.01402 1.81036 1.21614 0.83814 0.95665 0.82706 1.90981 1.48623 1.42396 1.53070 1.46155 1.06363 1.07969 1.64769 1.21640 0.99909 0.82084 0.97110 1.21951 1.03182 0.96468 0.98315 1.20142 0.78993 0.86455 0.84090 1.90686 1.54961 1.66330 1.31552 1.45970 1.59747 1.21487 1.08737 1.21602 0.97027 0.83594 0.98330 1.19997 0.94656 0.87885 0.89389 0.92497 1.42473 1.54059 1.34871 1.04507 1.19217 1.22744 1.11978 0.83118 0.91001 1.24696 0.99656 0.98330 0.97692 1.69658 1.32922 1.20688 1.34370 0.86201 0.77280 0.77347 0.85843 1.20564 1.21924 1.21875 1.23061 0.99983 1.00225 0.96702 1.22909 0.90461 1.03342 1.03248 1.22853 1.04903 0.97612 0.95876 0.89091 0.89087 0.90133 0.79143 0.87877 0.87780 0.87994 0.88348 0.75206 0.91575 0.91777 0.77971 0.93506 0.89614 0.86363 0.91276 0.90990 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.70 36.01 0.35 -0.30 16 2 C 0.11 0.91 6.59 -82.51 -0.54 0.37 16 3 C -0.24 -1.87 11.24 28.83 0.32 -1.55 16 4 S -0.01 -0.06 22.97 -107.50 -2.47 -2.53 16 5 C 0.48 6.25 8.27 53.82 0.45 6.69 16 6 O -0.47 -7.65 17.55 5.08 0.09 -7.56 16 7 N -0.53 -5.78 2.60 -117.28 -0.31 -6.09 16 8 C 0.12 1.32 4.56 -4.04 -0.02 1.30 16 9 C -0.16 -1.86 6.02 -27.88 -0.17 -2.03 16 10 C 0.52 7.67 7.83 -10.98 -0.09 7.59 16 11 O -0.56 -9.70 15.98 5.56 0.09 -9.61 16 12 N -0.71 -10.84 5.39 -60.29 -0.32 -11.16 16 13 C 0.12 1.91 5.22 -4.04 -0.02 1.89 16 14 C 0.19 3.38 2.86 -67.93 -0.19 3.18 16 15 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 16 N -0.72 -15.25 3.08 -53.43 -0.16 -15.41 16 17 C -0.24 -5.78 8.16 -15.06 -0.12 -5.91 16 18 H 0.07 1.74 6.91 -52.48 -0.36 1.37 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -25.33 13.06 55.49 0.72 -24.61 16 21 Si 0.90 20.85 29.55 -169.99 -5.02 15.82 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.18 -3.00 5.71 -90.62 -0.52 -3.52 16 26 C -0.16 -2.95 9.74 -26.70 -0.26 -3.21 16 27 C -0.18 -3.05 9.87 -26.70 -0.26 -3.32 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.08 0.51 6.18 -51.92 -0.32 0.19 16 31 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.10 1.32 7.76 -51.93 -0.40 0.92 16 33 H 0.10 1.03 6.07 -51.93 -0.32 0.72 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.41 6.39 8.14 -40.82 -0.33 6.06 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.39 8.98 7.80 -40.82 -0.32 8.67 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 42 H 0.12 2.57 6.68 -51.93 -0.35 2.23 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -29.65 386.18 -9.24 -38.88 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -6.50 Total: 15.54 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.17 Total: 0.90 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.07 Total: -57.27 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.18 Total: -17.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.47 Total: -2.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.65 -9.24 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713869050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.461 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds