Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47297 * 2 1 4 4 N 1.30179 * 126.80512 * 269.68794 * 3 2 1 5 5 O 1.20927 * 111.60367 * 180.26116 * 4 3 2 6 6 C 1.34037 * 111.56699 * 359.97438 * 5 4 3 7 7 C 1.35449 * 106.44977 * 0.02562 * 6 5 4 8 8 C 1.50701 * 128.00914 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47154 * 260.04000 * 8 7 6 10 10 C 1.47484 * 111.00207 * 265.97132 * 9 8 7 11 11 C 1.53515 * 87.93226 * 221.29720 * 10 9 8 12 12 C 1.52996 * 114.34476 * 139.68231 * 11 10 9 13 13 N 1.46504 * 109.47148 * 91.07537 * 12 11 10 14 14 C 1.34778 * 120.00009 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99801 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00328 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99654 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00048 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99806 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00033 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47285 * 90.00178 * 22 20 18 24 24 H 1.48503 * 109.47117 * 209.99908 * 22 20 18 25 25 H 1.48497 * 109.47524 * 329.99823 * 22 20 18 26 26 C 1.47481 * 110.99781 * 169.99712 * 9 8 7 27 27 H 1.08995 * 109.47275 * 299.99874 * 1 2 3 28 28 H 1.09009 * 109.46862 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47008 * 240.00083 * 2 1 3 31 31 H 1.08997 * 109.47129 * 120.00315 * 2 1 3 32 32 H 1.08002 * 126.77549 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47004 * 20.04054 * 8 7 6 34 34 H 1.09004 * 109.46963 * 140.03894 * 8 7 6 35 35 H 1.09002 * 113.47538 * 336.06170 * 10 9 8 36 36 H 1.08999 * 113.47892 * 106.53022 * 10 9 8 37 37 H 1.09003 * 114.17025 * 272.37601 * 11 10 9 38 38 H 1.08997 * 109.47313 * 211.07792 * 12 11 10 39 39 H 1.09001 * 109.46916 * 331.07913 * 12 11 10 40 40 H 0.96994 * 119.99559 * 359.97438 * 13 12 11 41 41 H 1.08997 * 109.47408 * 300.00028 * 16 14 13 42 42 H 1.08998 * 109.47304 * 59.99874 * 16 14 13 43 43 H 0.97006 * 120.00506 * 179.97438 * 21 20 18 44 44 H 1.08993 * 113.47905 * 253.46675 * 26 9 8 45 45 H 1.08998 * 113.47934 * 23.88481 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2977 2.1542 -1.0423 5 8 2.6899 3.2532 -0.7252 6 6 2.7360 3.3945 0.6069 7 6 2.3144 2.2194 1.1321 8 6 2.1777 1.8488 2.5864 9 7 3.3401 1.0514 2.9998 10 6 3.0597 -0.3918 2.8828 11 6 3.7859 -0.5849 4.2215 12 6 3.1211 -1.5940 5.1599 13 7 3.6823 -2.9260 4.9212 14 6 3.2441 -3.9802 5.6376 15 8 2.3855 -3.8259 6.4802 16 6 3.8210 -5.3504 5.3918 17 16 3.0347 -6.5442 6.5020 18 6 3.8734 -8.0149 6.0136 19 1 4.6219 -7.9767 5.2360 20 6 3.5730 -9.2221 6.6291 21 7 4.1999 -10.3205 6.2646 22 14 2.2789 -9.2879 7.9746 23 1 0.9484 -9.5499 7.3693 24 1 2.6117 -10.3762 8.9286 25 1 2.2479 -7.9901 8.6955 26 6 3.3638 0.8712 4.4634 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0478 4.2722 1.1536 33 1 2.1262 2.7555 3.1891 34 1 1.2678 1.2656 2.7288 35 1 1.9975 -0.6327 2.9263 36 1 3.5659 -0.8657 2.0419 37 1 4.8625 -0.7279 4.1286 38 1 3.3032 -1.3029 6.1943 39 1 2.0477 -1.6129 4.9714 40 1 4.3688 -3.0494 4.2472 41 1 3.6388 -5.6411 4.3572 42 1 4.8944 -5.3319 5.5802 43 1 3.9902 -11.1643 6.6949 44 1 4.1278 1.4676 4.9620 45 1 2.3830 0.9683 4.9289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713887701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = 54.565622 kcal Electronic energy + Delta-G solvation = -26003.565311 eV Core-core repulsion = 22151.774539 eV Total energy + Delta-G solvation = -3851.790772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.28339 -40.86923 -39.12443 -36.21356 -34.77849 -33.37072 -32.45497 -31.47081 -30.95214 -29.36591 -26.88873 -26.54261 -25.61685 -24.81480 -23.60489 -21.50930 -21.27585 -20.79685 -19.99433 -18.05198 -17.86781 -17.69262 -16.64512 -16.52081 -16.19144 -15.71634 -15.55561 -15.12574 -15.04824 -14.85627 -14.58054 -14.03981 -13.81498 -13.74631 -13.30575 -13.22329 -13.09477 -12.95517 -12.81442 -12.48581 -12.02366 -11.98272 -11.85986 -11.81264 -11.45124 -11.28129 -11.13839 -11.02529 -10.86184 -10.62480 -10.24164 -9.90955 -9.85813 -9.57878 -9.41566 -9.04975 -8.99390 -8.52201 -6.93798 -6.30325 -4.02312 1.13387 1.80711 2.73200 2.88435 2.93502 3.25945 3.32037 3.48887 3.51907 3.59845 3.74360 3.94656 4.08817 4.24050 4.31615 4.38661 4.47949 4.69021 4.74141 4.80284 4.81937 4.84826 4.86300 4.94547 5.01715 5.08687 5.11160 5.18584 5.24265 5.28260 5.29346 5.38422 5.47123 5.58232 5.59087 5.61811 5.73988 5.75407 5.79887 5.83117 5.99314 6.44003 6.49059 7.55915 7.92662 7.92667 8.40301 8.44631 9.15759 10.78865 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.001842 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.670220 B =15200.415813 C =15801.531029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C 0.031 3.969 4 N -0.366 5.366 5 O 0.096 5.904 6 C -0.048 4.048 7 C -0.187 4.187 8 C 0.094 3.906 9 N -0.466 5.466 10 C -0.001 4.001 11 C -0.126 4.126 12 C 0.132 3.868 13 N -0.736 5.736 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.008 3.992 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.215 0.785 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 29.423 -10.118 31.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.129 4.129 4 N -0.071 5.071 5 O 0.032 5.968 6 C -0.130 4.130 7 C -0.191 4.191 8 C -0.034 4.034 9 N -0.188 5.188 10 C -0.130 4.130 11 C -0.145 4.145 12 C 0.008 3.992 13 N -0.390 5.390 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.907 29.636 -10.385 31.645 hybrid contribution 0.171 -0.772 0.384 0.879 sum -3.736 28.864 -10.001 30.775 Atomic orbital electron populations 1.21724 0.93825 1.02662 1.02251 1.20117 0.96540 0.88344 1.04332 1.23492 1.01809 0.99186 0.88363 1.73855 1.16151 0.92863 1.24207 1.84827 1.62166 1.26828 1.22998 1.25763 1.02442 1.01202 0.83630 1.20989 1.07170 0.94117 0.96835 1.20881 0.93359 0.99569 0.89633 1.68964 1.34533 1.05606 1.09688 1.24165 1.00097 0.90070 0.98662 1.22994 1.01574 0.94551 0.95417 1.21237 0.97619 0.81277 0.99083 1.45943 1.43826 1.07477 1.41792 1.20289 0.81899 0.85673 0.80497 1.90700 1.30865 1.85170 1.32770 1.23278 1.04318 0.94537 1.05370 1.84785 1.55033 1.02391 1.49415 1.22312 1.26578 0.91905 1.26113 0.89371 1.24717 0.95795 0.94415 0.96432 1.69935 1.40999 0.99053 1.41650 0.86731 0.82120 0.80403 0.82566 1.19218 1.19941 1.15932 1.23822 1.02069 0.95713 0.90530 0.92507 0.92404 0.91288 0.89949 0.89217 0.76855 0.89352 0.91921 0.90521 0.89329 0.87081 0.91058 0.91518 0.76549 0.88491 0.88431 0.91932 0.88970 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.06 -0.42 6.44 -27.89 -0.18 -0.60 16 3 C 0.03 0.28 6.58 -82.10 -0.54 -0.26 16 4 N -0.37 -3.90 12.07 33.43 0.40 -3.50 16 5 O 0.10 0.87 11.20 17.18 0.19 1.06 16 6 C -0.05 -0.30 12.26 29.74 0.36 0.06 16 7 C -0.19 -1.38 5.91 -104.42 -0.62 -2.00 16 8 C 0.09 0.55 5.30 -4.98 -0.03 0.52 16 9 N -0.47 -3.07 6.32 -246.04 -1.55 -4.62 16 10 C 0.00 -0.01 5.44 -7.53 -0.04 -0.05 16 11 C -0.13 -0.81 4.08 -90.08 -0.37 -1.18 16 12 C 0.13 1.23 5.59 -4.04 -0.02 1.20 16 13 N -0.74 -8.35 5.56 -60.30 -0.33 -8.68 16 14 C 0.53 8.91 7.85 -10.99 -0.09 8.82 16 15 O -0.52 -10.79 15.86 5.56 0.09 -10.70 16 16 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 18 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.76 5.50 -17.44 -0.10 2.67 16 21 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 22 Si 0.86 21.60 27.74 -169.99 -4.71 16.88 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 26 C 0.01 0.04 7.26 -7.53 -0.05 -0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.60 4.87 -51.93 -0.25 0.35 16 32 H 0.21 0.48 8.06 -52.49 -0.42 0.05 16 33 H 0.09 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.06 0.35 7.30 -51.93 -0.38 -0.03 16 35 H 0.08 0.48 6.65 -51.93 -0.35 0.14 16 36 H 0.09 0.61 7.69 -51.93 -0.40 0.21 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 40 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 41 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -35.47 386.95 -8.84 -44.30 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.76 Total: -1.33 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.77 Total: -8.09 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.71 Total: -42.40 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.28 Total: -9.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.47 -8.84 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713887701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.869 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds