Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47297 * 2 1 4 4 N 1.30179 * 126.80512 * 269.68794 * 3 2 1 5 5 O 1.20927 * 111.60367 * 180.26116 * 4 3 2 6 6 C 1.34037 * 111.56699 * 359.97438 * 5 4 3 7 7 C 1.35449 * 106.44977 * 0.02562 * 6 5 4 8 8 C 1.50701 * 128.00914 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47154 * 260.04000 * 8 7 6 10 10 C 1.47484 * 111.00207 * 265.97132 * 9 8 7 11 11 C 1.53515 * 87.93226 * 221.29720 * 10 9 8 12 12 C 1.52996 * 114.34476 * 139.68231 * 11 10 9 13 13 N 1.46504 * 109.47148 * 91.07537 * 12 11 10 14 14 C 1.34778 * 120.00009 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99801 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00328 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99654 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00048 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99806 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00033 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47285 * 90.00178 * 22 20 18 24 24 H 1.48503 * 109.47117 * 209.99908 * 22 20 18 25 25 H 1.48497 * 109.47524 * 329.99823 * 22 20 18 26 26 C 1.47481 * 110.99781 * 169.99712 * 9 8 7 27 27 H 1.08995 * 109.47275 * 299.99874 * 1 2 3 28 28 H 1.09009 * 109.46862 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47008 * 240.00083 * 2 1 3 31 31 H 1.08997 * 109.47129 * 120.00315 * 2 1 3 32 32 H 1.08002 * 126.77549 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47004 * 20.04054 * 8 7 6 34 34 H 1.09004 * 109.46963 * 140.03894 * 8 7 6 35 35 H 1.09002 * 113.47538 * 336.06170 * 10 9 8 36 36 H 1.08999 * 113.47892 * 106.53022 * 10 9 8 37 37 H 1.09003 * 114.17025 * 272.37601 * 11 10 9 38 38 H 1.08997 * 109.47313 * 211.07792 * 12 11 10 39 39 H 1.09001 * 109.46916 * 331.07913 * 12 11 10 40 40 H 0.96994 * 119.99559 * 359.97438 * 13 12 11 41 41 H 1.08997 * 109.47408 * 300.00028 * 16 14 13 42 42 H 1.08998 * 109.47304 * 59.99874 * 16 14 13 43 43 H 0.97006 * 120.00506 * 179.97438 * 21 20 18 44 44 H 1.08993 * 113.47905 * 253.46675 * 26 9 8 45 45 H 1.08998 * 113.47934 * 23.88481 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2977 2.1542 -1.0423 5 8 2.6899 3.2532 -0.7252 6 6 2.7360 3.3945 0.6069 7 6 2.3144 2.2194 1.1321 8 6 2.1777 1.8488 2.5864 9 7 3.3401 1.0514 2.9998 10 6 3.0597 -0.3918 2.8828 11 6 3.7859 -0.5849 4.2215 12 6 3.1211 -1.5940 5.1599 13 7 3.6823 -2.9260 4.9212 14 6 3.2441 -3.9802 5.6376 15 8 2.3855 -3.8259 6.4802 16 6 3.8210 -5.3504 5.3918 17 16 3.0347 -6.5442 6.5020 18 6 3.8734 -8.0149 6.0136 19 1 4.6219 -7.9767 5.2360 20 6 3.5730 -9.2221 6.6291 21 7 4.1999 -10.3205 6.2646 22 14 2.2789 -9.2879 7.9746 23 1 0.9484 -9.5499 7.3693 24 1 2.6117 -10.3762 8.9286 25 1 2.2479 -7.9901 8.6955 26 6 3.3638 0.8712 4.4634 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0478 4.2722 1.1536 33 1 2.1262 2.7555 3.1891 34 1 1.2678 1.2656 2.7288 35 1 1.9975 -0.6327 2.9263 36 1 3.5659 -0.8657 2.0419 37 1 4.8625 -0.7279 4.1286 38 1 3.3032 -1.3029 6.1943 39 1 2.0477 -1.6129 4.9714 40 1 4.3688 -3.0494 4.2472 41 1 3.6388 -5.6411 4.3572 42 1 4.8944 -5.3319 5.5802 43 1 3.9902 -11.1643 6.6949 44 1 4.1278 1.4676 4.9620 45 1 2.3830 0.9683 4.9289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713887701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = 27.833130 kcal Electronic energy + Delta-G solvation = -26004.724519 eV Core-core repulsion = 22151.774539 eV Total energy + Delta-G solvation = -3852.949980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.89784 -41.43678 -40.35614 -36.82362 -35.77158 -34.66414 -33.98583 -32.09612 -31.90225 -30.40806 -27.93666 -27.54227 -27.00652 -25.40096 -24.26025 -22.05937 -21.88980 -21.84632 -20.73251 -19.81773 -18.58696 -18.35449 -17.79559 -17.53613 -17.07938 -16.91891 -16.55577 -16.21132 -15.96150 -15.83293 -15.47754 -15.16155 -14.91002 -14.68991 -14.56054 -14.35505 -13.79528 -13.68720 -13.61079 -13.33768 -13.29276 -13.02451 -12.96752 -12.70316 -12.53595 -12.42067 -12.37629 -11.99414 -11.85326 -11.65385 -11.41437 -11.16313 -10.98514 -10.84473 -10.52347 -10.42083 -10.10653 -9.86577 -8.98166 -8.50647 -6.21254 0.60665 1.00859 1.22011 1.32225 1.47869 1.57625 1.59599 2.24002 2.28207 2.42613 2.73024 2.87582 3.02961 3.20431 3.39119 3.56650 3.71448 3.90070 3.91253 4.00848 4.22265 4.25838 4.27299 4.28465 4.30376 4.34074 4.47734 4.49977 4.57372 4.63206 4.64926 4.76417 4.79680 4.81087 4.90232 4.95638 5.02678 5.10437 5.21686 5.25068 5.31534 5.47806 5.71524 6.01112 6.12485 6.49657 6.94540 7.22335 7.35539 8.61658 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.001842 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.670220 B =15200.415813 C =15801.531029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C 0.019 3.981 4 N -0.404 5.404 5 O 0.083 5.917 6 C -0.037 4.037 7 C -0.200 4.200 8 C 0.097 3.903 9 N -0.476 5.476 10 C -0.002 4.002 11 C -0.116 4.116 12 C 0.134 3.866 13 N -0.710 5.710 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.113 4.113 17 S -0.176 6.176 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.236 1.236 26 C 0.014 3.986 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.416 0.584 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.101 0.899 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 31.580 -9.413 33.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 C -0.140 4.140 4 N -0.111 5.111 5 O 0.021 5.979 6 C -0.118 4.118 7 C -0.204 4.204 8 C -0.032 4.032 9 N -0.198 5.198 10 C -0.131 4.131 11 C -0.135 4.135 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.321 3.679 15 O -0.442 6.442 16 C -0.264 4.264 17 S 0.050 5.950 18 C -0.676 4.676 19 H 0.080 0.920 20 C -0.162 4.162 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.185 1.185 25 H -0.160 1.160 26 C -0.115 4.115 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.270 0.730 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.253 0.747 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.053 31.832 -9.720 33.529 hybrid contribution 0.316 -1.298 0.050 1.337 sum -3.737 30.533 -9.670 32.245 Atomic orbital electron populations 1.21689 0.93263 1.03099 1.01971 1.20163 0.97010 0.87894 1.04315 1.23843 1.01523 0.99711 0.88883 1.73850 1.17970 0.93781 1.25509 1.84778 1.62304 1.26372 1.24490 1.26532 1.00590 1.02115 0.82598 1.21246 1.07648 0.94235 0.97268 1.20935 0.93081 1.00342 0.88811 1.68948 1.35068 1.05483 1.10317 1.24169 1.00209 0.90365 0.98328 1.22890 1.01558 0.94390 0.94705 1.21376 0.97670 0.80285 0.99698 1.45740 1.43079 1.07117 1.40474 1.19906 0.81515 0.85886 0.80640 1.90690 1.32944 1.85655 1.34949 1.23283 1.04627 0.94059 1.04391 1.84691 1.55790 1.02603 1.51883 1.22468 1.26077 0.93803 1.25276 0.91982 1.25586 0.97766 0.94189 0.98627 1.70017 1.42584 0.99789 1.43130 0.85852 0.79667 0.80629 0.80129 1.18705 1.18452 1.15966 1.23839 1.02854 0.94681 0.90105 0.91981 0.93440 0.90468 0.90790 0.88342 0.72982 0.87412 0.91696 0.90255 0.89841 0.86501 0.91479 0.91838 0.74656 0.86900 0.86888 0.91404 0.88098 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.06 -0.82 6.44 29.85 0.19 -0.63 16 3 C 0.02 0.34 6.58 43.58 0.29 0.63 16 4 N -0.40 -8.61 12.07 -49.54 -0.60 -9.21 16 5 O 0.08 1.44 11.20 71.65 0.80 2.24 16 6 C -0.04 -0.38 12.26 67.17 0.82 0.44 16 7 C -0.20 -2.58 5.91 -19.73 -0.12 -2.69 16 8 C 0.10 0.86 5.30 85.56 0.45 1.31 16 9 N -0.48 -4.93 6.32 -932.33 -5.89 -10.82 16 10 C 0.00 -0.02 5.44 83.58 0.45 0.43 16 11 C -0.12 -1.17 4.08 -10.45 -0.04 -1.21 16 12 C 0.13 2.15 5.59 86.38 0.48 2.63 16 13 N -0.71 -14.37 5.56 -463.07 -2.57 -16.94 16 14 C 0.54 17.06 7.85 87.66 0.69 17.74 16 15 O -0.56 -22.79 15.86 -3.02 -0.05 -22.84 16 16 C -0.11 -4.05 6.16 71.23 0.44 -3.61 16 17 S -0.18 -8.72 18.55 -56.49 -1.05 -9.77 16 18 C -0.53 -30.44 10.04 67.95 0.68 -29.75 16 19 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 20 C 0.04 2.54 5.50 84.86 0.47 3.01 16 21 N -0.92 -55.55 13.97 21.65 0.30 -55.25 16 22 Si 0.92 44.59 27.74 68.60 1.90 46.49 16 23 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 26 C 0.01 0.11 7.26 83.59 0.61 0.72 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.10 1.21 4.87 -2.39 -0.01 1.20 16 32 H 0.25 0.23 8.06 -2.91 -0.02 0.21 16 33 H 0.11 0.54 8.08 -2.39 -0.02 0.52 16 34 H 0.06 0.55 7.30 -2.38 -0.02 0.54 16 35 H 0.08 0.81 6.65 -2.39 -0.02 0.79 16 36 H 0.08 0.99 7.69 -2.39 -0.02 0.97 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.12 7.82 -2.39 -0.02 1.10 16 40 H 0.42 5.97 8.47 -92.71 -0.79 5.18 16 41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 42 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 43 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 0.54 7.87 -2.39 -0.02 0.52 16 Total: -1.00 -77.91 386.95 -0.83 -78.75 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.19 Total: 9.45 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 6.13 Total: -12.09 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -8.76 Total: -92.23 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.75 Total: -20.60 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -77.91 -0.83 -78.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713887701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.578 kcal (2) G-P(sol) polarization free energy of solvation -77.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds