Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34325 * 126.44461 * 2 1 4 4 N 1.34474 * 107.67011 * 180.02562 * 3 2 1 5 5 C 1.30250 * 108.70244 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.62162 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46796 * 195.02460 * 6 5 4 8 8 C 1.52994 * 109.47464 * 75.02188 * 6 5 4 9 9 N 1.46903 * 109.46823 * 315.02127 * 6 5 4 10 10 C 1.46901 * 111.00106 * 205.00046 * 9 6 5 11 11 H 1.09007 * 112.84631 * 23.80747 * 10 9 6 12 12 C 1.53782 * 113.61643 * 154.99615 * 10 9 6 13 13 C 1.53779 * 87.07958 * 139.98219 * 12 10 9 14 14 H 1.09004 * 113.61070 * 89.20240 * 13 12 10 15 15 N 1.46499 * 113.61675 * 220.01968 * 13 12 10 16 16 C 1.34778 * 120.00278 * 204.99969 * 15 13 12 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99753 * 24 22 20 26 26 H 1.48497 * 109.46782 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00030 * 24 22 20 28 28 C 1.53780 * 87.08570 * 334.57174 * 13 12 10 29 29 O 1.33968 * 108.76202 * 0.22645 * 5 4 3 30 30 H 1.09000 * 109.47219 * 89.97768 * 1 2 3 31 31 H 1.09003 * 109.46998 * 209.97680 * 1 2 3 32 32 H 1.09002 * 109.47174 * 329.97407 * 1 2 3 33 33 H 1.08000 * 126.16446 * 0.05767 * 3 2 1 34 34 H 1.09000 * 109.47088 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.47336 * 299.99942 * 8 6 5 36 36 H 1.08998 * 109.47220 * 60.00209 * 8 6 5 37 37 H 1.00893 * 111.00044 * 81.04738 * 9 6 5 38 38 H 1.08998 * 113.61183 * 25.43650 * 12 10 9 39 39 H 1.08996 * 113.61705 * 254.53296 * 12 10 9 40 40 H 0.97000 * 119.99972 * 25.00324 * 15 13 12 41 41 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 42 42 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 43 43 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.61956 * 139.97554 * 28 13 12 45 45 H 1.08996 * 113.61235 * 270.88590 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5765 -0.6547 -0.0004 6 6 4.8004 -1.5340 -0.0014 7 1 4.5161 -2.5521 -0.2674 8 6 5.4335 -1.5286 1.3914 9 7 5.7688 -1.0241 -0.9814 10 6 6.6574 -2.0959 -1.4501 11 1 6.2184 -3.0877 -1.3411 12 6 7.2540 -1.8362 -2.8435 13 6 8.5712 -2.4154 -2.3010 14 1 8.6574 -3.4949 -2.4253 15 7 9.7616 -1.6934 -2.7567 16 6 10.9529 -2.3219 -2.8073 17 8 11.0392 -3.4853 -2.4758 18 6 12.1775 -1.5790 -3.2755 19 16 13.6086 -2.6863 -3.2314 20 6 14.8609 -1.5910 -3.8116 21 1 14.6112 -0.5717 -4.0664 22 6 16.1697 -2.0365 -3.9350 23 7 16.4742 -3.2788 -3.6239 24 14 17.4989 -0.8731 -4.5427 25 1 17.6002 0.2871 -3.6214 26 1 18.8002 -1.5873 -4.5851 27 1 17.1528 -0.3945 -5.9052 28 6 8.0908 -1.9910 -0.9031 29 8 2.3075 -1.0840 -0.0047 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 1.9822 2.1112 0.0009 34 1 6.3190 -2.1642 1.3905 35 1 5.7178 -0.5106 1.6574 36 1 4.7151 -1.9070 2.1186 37 1 6.2993 -0.2557 -0.5994 38 1 7.3156 -0.7791 -3.1020 39 1 6.8031 -2.4400 -3.6310 40 1 9.6926 -0.7630 -3.0221 41 1 12.3574 -0.7260 -2.6212 42 1 12.0215 -1.2279 -4.2956 43 1 17.3888 -3.5901 -3.7106 44 1 8.3153 -2.7197 -0.1243 45 1 8.3812 -0.9762 -0.6312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713979667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = 4.226200 kcal Electronic energy + Delta-G solvation = -25520.979464 eV Core-core repulsion = 21667.005812 eV Total energy + Delta-G solvation = -3853.973653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.64248 -40.16473 -38.48296 -36.31197 -34.91156 -33.28667 -32.45664 -32.41321 -29.95820 -28.77298 -27.23483 -25.88777 -25.49359 -24.30168 -23.38502 -22.06667 -21.14795 -20.33937 -20.08363 -17.80258 -17.53364 -17.07931 -16.66424 -16.28269 -15.94549 -15.14333 -15.00393 -14.79761 -14.77442 -14.59974 -14.28213 -13.93317 -13.79357 -13.62266 -13.33720 -13.03489 -12.88865 -12.81844 -12.68959 -12.61234 -12.55690 -11.94973 -11.88956 -11.59182 -11.41537 -11.08760 -11.03678 -11.01785 -10.98154 -10.78044 -10.74007 -9.81114 -9.36915 -9.06624 -9.04686 -8.93323 -8.72609 -8.23229 -6.49087 -6.20730 -3.91280 1.09009 2.16136 2.39466 3.05191 3.07884 3.24346 3.28391 3.32237 3.63307 3.69983 3.87823 4.21546 4.27742 4.35970 4.39473 4.46302 4.59884 4.64852 4.70662 4.72021 4.88473 4.90379 5.01333 5.14393 5.14689 5.14778 5.24385 5.34786 5.49663 5.51088 5.55291 5.62229 5.64754 5.70525 5.77209 5.79723 5.90468 5.99529 6.03258 6.15596 6.57018 6.69398 6.91749 7.45264 7.60201 7.73984 8.35931 8.62835 9.24530 10.86650 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.001536 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.490777 B =18222.063648 C =18503.425536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.055 4.055 3 C -0.043 4.043 4 N -0.467 5.467 5 C 0.204 3.796 6 C 0.184 3.816 7 H 0.105 0.895 8 C -0.178 4.178 9 N -0.662 5.662 10 C 0.070 3.930 11 H 0.103 0.897 12 C -0.133 4.133 13 C 0.128 3.872 14 H 0.115 0.885 15 N -0.727 5.727 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.180 4.180 29 O -0.203 6.203 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.181 0.819 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.358 0.642 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.074 0.926 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.291 6.942 8.242 34.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C -0.182 4.182 4 N -0.196 5.196 5 C -0.004 4.004 6 C 0.072 3.928 7 H 0.123 0.877 8 C -0.237 4.237 9 N -0.294 5.294 10 C -0.040 4.040 11 H 0.121 0.879 12 C -0.172 4.172 13 C 0.021 3.979 14 H 0.133 0.867 15 N -0.380 5.380 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.221 4.221 29 O -0.090 6.090 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.198 0.802 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.179 0.821 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -31.893 5.123 8.266 33.342 hybrid contribution 0.588 2.242 -0.152 2.323 sum -31.305 7.365 8.113 33.167 Atomic orbital electron populations 1.20258 0.84069 1.04278 1.03796 1.23448 0.94988 0.84668 1.07686 1.23099 0.87959 1.00290 1.06819 1.70358 1.22689 1.09162 1.17370 1.26142 0.83873 0.90308 1.00100 1.19738 0.85347 0.95059 0.92644 0.87679 1.22522 1.01706 1.03793 0.95704 1.60098 1.19453 1.10223 1.39658 1.22934 0.90111 0.94543 0.96401 0.87862 1.23471 0.94546 1.02423 0.96780 1.22212 0.83586 0.98466 0.93623 0.86681 1.45955 1.07595 1.15156 1.69264 1.20347 0.83873 0.87223 0.76636 1.90690 1.85161 1.16602 1.46838 1.23543 0.98607 1.04469 1.03894 1.85378 0.95949 1.15278 1.86772 1.22836 0.94865 0.99434 1.51338 0.90981 1.24987 0.97894 0.95650 0.94988 1.70012 1.19954 1.15111 1.45240 0.86228 0.79839 0.80176 0.79284 1.19946 1.20805 1.19935 1.24236 0.96299 1.02795 0.98725 1.84367 1.17840 1.36720 1.70081 0.89812 0.90425 0.89031 0.80174 0.90457 0.91120 0.91547 0.82056 0.89052 0.90526 0.76693 0.89254 0.89210 0.92141 0.90759 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.05 -0.43 7.39 -35.69 -0.26 -0.70 16 3 C -0.04 -0.37 11.80 -17.78 -0.21 -0.58 16 4 N -0.47 -5.02 11.28 -11.10 -0.13 -5.15 16 5 C 0.20 1.98 7.19 -12.95 -0.09 1.89 16 6 C 0.18 1.35 3.12 -68.87 -0.21 1.14 16 7 H 0.11 0.66 7.46 -51.93 -0.39 0.27 16 8 C -0.18 -1.11 9.15 37.15 0.34 -0.77 16 9 N -0.66 -5.13 6.34 -100.10 -0.63 -5.76 16 10 C 0.07 0.52 4.00 -66.90 -0.27 0.25 16 11 H 0.10 0.67 7.48 -51.93 -0.39 0.28 16 12 C -0.13 -1.11 7.63 -25.92 -0.20 -1.31 16 13 C 0.13 1.39 4.24 -67.12 -0.28 1.10 16 14 H 0.12 1.46 7.46 -51.93 -0.39 1.08 16 15 N -0.73 -9.37 5.35 -53.02 -0.28 -9.66 16 16 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 17 O -0.52 -11.61 15.46 5.56 0.09 -11.53 16 18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.18 -1.58 7.49 -25.92 -0.19 -1.77 16 29 O -0.20 -1.98 10.78 5.35 0.06 -1.92 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.08 0.43 8.07 -51.93 -0.42 0.02 16 35 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.36 2.81 7.93 -39.30 -0.31 2.49 16 38 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 4.07 8.73 -40.82 -0.36 3.71 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.76 7.82 -51.93 -0.41 0.35 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -36.26 395.83 -8.96 -45.22 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.85 Total: 2.55 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.68 Total: -6.80 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.31 Total: -46.04 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.14 Total: -13.45 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.26 -8.96 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713979667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.445 kcal (2) G-P(sol) polarization free energy of solvation -36.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds