Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34325 * 126.44461 * 2 1 4 4 N 1.34474 * 107.67011 * 180.02562 * 3 2 1 5 5 C 1.30250 * 108.70244 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.62162 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46796 * 195.02460 * 6 5 4 8 8 C 1.52994 * 109.47464 * 75.02188 * 6 5 4 9 9 N 1.46903 * 109.46823 * 315.02127 * 6 5 4 10 10 C 1.46901 * 111.00106 * 205.00046 * 9 6 5 11 11 H 1.09007 * 112.84631 * 23.80747 * 10 9 6 12 12 C 1.53782 * 113.61643 * 154.99615 * 10 9 6 13 13 C 1.53779 * 87.07958 * 139.98219 * 12 10 9 14 14 H 1.09004 * 113.61070 * 89.20240 * 13 12 10 15 15 N 1.46499 * 113.61675 * 220.01968 * 13 12 10 16 16 C 1.34778 * 120.00278 * 204.99969 * 15 13 12 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99753 * 24 22 20 26 26 H 1.48497 * 109.46782 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00030 * 24 22 20 28 28 C 1.53780 * 87.08570 * 334.57174 * 13 12 10 29 29 O 1.33968 * 108.76202 * 0.22645 * 5 4 3 30 30 H 1.09000 * 109.47219 * 89.97768 * 1 2 3 31 31 H 1.09003 * 109.46998 * 209.97680 * 1 2 3 32 32 H 1.09002 * 109.47174 * 329.97407 * 1 2 3 33 33 H 1.08000 * 126.16446 * 0.05767 * 3 2 1 34 34 H 1.09000 * 109.47088 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.47336 * 299.99942 * 8 6 5 36 36 H 1.08998 * 109.47220 * 60.00209 * 8 6 5 37 37 H 1.00893 * 111.00044 * 81.04738 * 9 6 5 38 38 H 1.08998 * 113.61183 * 25.43650 * 12 10 9 39 39 H 1.08996 * 113.61705 * 254.53296 * 12 10 9 40 40 H 0.97000 * 119.99972 * 25.00324 * 15 13 12 41 41 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 42 42 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 43 43 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.61956 * 139.97554 * 28 13 12 45 45 H 1.08996 * 113.61235 * 270.88590 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5765 -0.6547 -0.0004 6 6 4.8004 -1.5340 -0.0014 7 1 4.5161 -2.5521 -0.2674 8 6 5.4335 -1.5286 1.3914 9 7 5.7688 -1.0241 -0.9814 10 6 6.6574 -2.0959 -1.4501 11 1 6.2184 -3.0877 -1.3411 12 6 7.2540 -1.8362 -2.8435 13 6 8.5712 -2.4154 -2.3010 14 1 8.6574 -3.4949 -2.4253 15 7 9.7616 -1.6934 -2.7567 16 6 10.9529 -2.3219 -2.8073 17 8 11.0392 -3.4853 -2.4758 18 6 12.1775 -1.5790 -3.2755 19 16 13.6086 -2.6863 -3.2314 20 6 14.8609 -1.5910 -3.8116 21 1 14.6112 -0.5717 -4.0664 22 6 16.1697 -2.0365 -3.9350 23 7 16.4742 -3.2788 -3.6239 24 14 17.4989 -0.8731 -4.5427 25 1 17.6002 0.2871 -3.6214 26 1 18.8002 -1.5873 -4.5851 27 1 17.1528 -0.3945 -5.9052 28 6 8.0908 -1.9910 -0.9031 29 8 2.3075 -1.0840 -0.0047 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 1.9822 2.1112 0.0009 34 1 6.3190 -2.1642 1.3905 35 1 5.7178 -0.5106 1.6574 36 1 4.7151 -1.9070 2.1186 37 1 6.2993 -0.2557 -0.5994 38 1 7.3156 -0.7791 -3.1020 39 1 6.8031 -2.4400 -3.6310 40 1 9.6926 -0.7630 -3.0221 41 1 12.3574 -0.7260 -2.6212 42 1 12.0215 -1.2279 -4.2956 43 1 17.3888 -3.5901 -3.7106 44 1 8.3153 -2.7197 -0.1243 45 1 8.3812 -0.9762 -0.6312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713979667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -24.407380 kcal Electronic energy + Delta-G solvation = -25522.221110 eV Core-core repulsion = 21667.005812 eV Total energy + Delta-G solvation = -3855.215298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.27577 -41.15577 -39.65269 -37.05846 -35.58833 -34.58566 -34.38241 -33.02210 -31.00208 -29.88143 -27.72912 -27.65805 -26.60220 -24.96619 -24.20005 -22.69803 -21.83439 -21.58388 -20.90898 -19.75522 -18.19044 -17.88756 -17.69165 -17.47352 -16.87187 -16.66117 -16.37968 -16.17639 -15.59672 -15.46839 -15.21549 -14.96551 -14.63495 -14.43773 -14.23226 -13.98413 -13.94993 -13.66395 -13.38493 -13.29044 -13.20421 -13.16308 -13.12049 -12.86184 -12.65011 -12.43856 -12.28918 -12.14977 -11.90153 -11.81540 -11.66613 -11.44738 -11.12347 -10.86790 -10.27362 -10.01469 -9.62080 -9.43010 -8.65855 -8.33993 -6.12053 0.47973 1.28003 1.44297 1.47493 1.56684 1.60854 1.62499 1.75391 2.27538 2.34902 3.00072 3.11229 3.17186 3.33648 3.56820 3.70214 3.80090 3.92004 3.96176 4.02244 4.05545 4.10584 4.15083 4.32168 4.42135 4.52084 4.52522 4.62340 4.67843 4.71584 4.78817 4.81423 4.85108 5.01677 5.05822 5.09772 5.13923 5.17091 5.21653 5.40293 5.42073 5.60752 5.96600 6.20114 6.31018 6.55868 6.81005 7.07233 7.28441 8.74973 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.001536 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.490777 B =18222.063648 C =18503.425536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.055 4.055 3 C -0.066 4.066 4 N -0.494 5.494 5 C 0.190 3.810 6 C 0.185 3.815 7 H 0.117 0.883 8 C -0.170 4.170 9 N -0.665 5.665 10 C 0.085 3.915 11 H 0.116 0.884 12 C -0.121 4.121 13 C 0.113 3.887 14 H 0.095 0.905 15 N -0.701 5.701 16 C 0.535 3.465 17 O -0.567 6.567 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.172 4.172 29 O -0.217 6.217 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.201 0.799 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.358 0.642 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.069 0.931 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.992 9.017 7.994 36.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C -0.204 4.204 4 N -0.223 5.223 5 C -0.018 4.018 6 C 0.073 3.927 7 H 0.135 0.865 8 C -0.230 4.230 9 N -0.297 5.297 10 C -0.025 4.025 11 H 0.134 0.866 12 C -0.160 4.160 13 C 0.007 3.993 14 H 0.113 0.887 15 N -0.354 5.354 16 C 0.321 3.679 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.212 4.212 29 O -0.104 6.104 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.218 0.782 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -33.657 7.246 8.018 35.350 hybrid contribution 0.924 1.645 -0.052 1.888 sum -32.734 8.891 7.966 34.843 Atomic orbital electron populations 1.20473 0.81226 1.05655 1.04907 1.24221 0.96532 0.83992 1.06011 1.23538 0.87606 1.01635 1.07634 1.70325 1.23956 1.09853 1.18149 1.26553 0.84445 0.90439 1.00361 1.19845 0.84635 0.95161 0.93031 0.86523 1.22449 1.01939 1.03381 0.95184 1.60051 1.19385 1.10226 1.40054 1.22827 0.89299 0.95108 0.95301 0.86606 1.23411 0.92467 1.02653 0.97467 1.22433 0.83461 0.97523 0.95878 0.88682 1.45739 1.06443 1.15782 1.67408 1.20071 0.84828 0.86515 0.76534 1.90678 1.85907 1.18531 1.49373 1.23393 0.96058 1.03127 1.05664 1.85546 1.00222 1.19416 1.87192 1.23187 0.95401 0.99745 1.51324 0.89966 1.26116 1.00601 0.97440 0.94864 1.70180 1.20612 1.17398 1.46548 0.85015 0.76173 0.77750 0.79129 1.18683 1.20351 1.18686 1.24189 0.97018 1.02869 0.97131 1.84373 1.18152 1.37602 1.70290 0.88672 0.89793 0.86890 0.78219 0.89674 0.92021 0.91244 0.82091 0.88335 0.90036 0.74730 0.87332 0.87337 0.91993 0.91201 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.43 71.24 0.74 0.40 16 2 C -0.05 -0.80 7.39 24.79 0.18 -0.61 16 3 C -0.07 -1.09 11.80 83.39 0.98 -0.11 16 4 N -0.49 -10.29 11.28 -303.84 -3.43 -13.72 16 5 C 0.19 3.54 7.19 88.34 0.64 4.17 16 6 C 0.18 2.47 3.12 44.17 0.14 2.61 16 7 H 0.12 1.27 7.46 -2.39 -0.02 1.25 16 8 C -0.17 -1.93 9.15 71.98 0.66 -1.27 16 9 N -0.67 -9.15 6.34 -470.60 -2.98 -12.13 16 10 C 0.08 1.08 4.00 45.44 0.18 1.26 16 11 H 0.12 1.24 7.48 -2.38 -0.02 1.22 16 12 C -0.12 -1.76 7.63 31.12 0.24 -1.53 16 13 C 0.11 2.32 4.24 45.52 0.19 2.51 16 14 H 0.10 2.42 7.46 -2.39 -0.02 2.40 16 15 N -0.70 -17.07 5.35 -440.04 -2.36 -19.42 16 16 C 0.53 19.49 7.85 87.66 0.69 20.17 16 17 O -0.57 -26.00 15.46 -3.02 -0.05 -26.05 16 18 C -0.13 -5.19 6.16 71.23 0.44 -4.75 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.48 9.50 67.96 0.65 -30.84 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.14 13.22 21.65 0.29 -55.86 16 24 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 28 C -0.17 -2.74 7.49 31.12 0.23 -2.50 16 29 O -0.22 -4.03 10.78 -3.78 -0.04 -4.07 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.36 5.03 7.93 -89.70 -0.71 4.31 16 38 H 0.10 1.34 8.12 -2.39 -0.02 1.33 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.42 7.43 8.73 -92.71 -0.81 6.62 16 41 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.43 7.82 -2.39 -0.02 1.41 16 Total: -1.00 -81.22 395.83 -1.78 -83.00 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.50 Total: 21.31 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 6.43 Total: -9.18 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -8.48 Total: -101.13 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.09 Total: -30.12 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -81.22 -1.78 -83.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713979667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.590 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds