Wall clock time and date at job start Sat Apr 11 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47242 * 2 1 4 4 C 1.37473 * 123.34996 * 265.02378 * 3 2 1 5 5 C 1.33820 * 115.10216 * 179.97438 * 4 3 2 6 6 S 1.70618 * 110.95375 * 359.75973 * 5 4 3 7 7 C 1.36654 * 123.35355 * 84.99824 * 3 2 1 8 8 C 1.46576 * 125.45688 * 359.97438 * 7 3 2 9 9 O 1.21704 * 120.00049 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.47565 * 65.00686 * 12 11 10 14 14 C 1.53003 * 109.47015 * 184.99978 * 12 11 10 15 15 N 1.46894 * 109.47749 * 305.00009 * 12 11 10 16 16 C 1.46897 * 111.00399 * 154.99861 * 15 12 11 17 17 C 1.50698 * 109.47337 * 180.02562 * 16 15 12 18 18 O 1.21290 * 120.00109 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00344 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00444 * 180.02562 * 19 17 16 21 21 H 1.07991 * 119.99821 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99869 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00667 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46950 * 90.00162 * 24 22 20 26 26 H 1.48503 * 109.47281 * 209.99958 * 24 22 20 27 27 H 1.48501 * 109.47182 * 330.00269 * 24 22 20 28 28 H 1.08997 * 109.46864 * 60.00493 * 1 2 3 29 29 H 1.08999 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47317 * 300.00003 * 1 2 3 31 31 H 1.08996 * 109.47339 * 239.99590 * 2 1 3 32 32 H 1.09003 * 109.47290 * 119.99638 * 2 1 3 33 33 H 1.07999 * 122.45331 * 359.95566 * 4 3 2 34 34 H 1.07992 * 124.52283 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00018 * 0.27868 * 10 8 7 36 36 H 1.09000 * 109.47212 * 300.00355 * 11 10 8 37 37 H 1.09001 * 109.46577 * 60.00430 * 11 10 8 38 38 H 1.09000 * 109.46883 * 59.99966 * 14 12 11 39 39 H 1.09001 * 109.47405 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47145 * 300.00897 * 14 12 11 41 41 H 1.00906 * 111.00152 * 278.96046 * 15 12 11 42 42 H 1.08992 * 109.47512 * 300.00571 * 16 15 12 43 43 H 1.09004 * 109.46916 * 60.00447 * 16 15 12 44 44 H 0.97009 * 119.99958 * 359.97438 * 19 17 16 45 45 H 0.96995 * 120.00372 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1001 -1.1440 5 6 2.8035 3.3545 -0.9528 6 16 2.7856 3.7588 0.7047 7 6 2.1890 2.1623 1.1371 8 6 1.8995 1.7027 2.4985 9 8 1.4832 0.5742 2.6842 10 7 2.0953 2.5294 3.5448 11 6 1.8055 2.0702 4.9055 12 6 2.1107 3.1934 5.8985 13 1 1.4305 4.0271 5.7246 14 6 1.9276 2.6753 7.3265 15 7 3.4963 3.6457 5.7157 16 6 3.6623 5.0319 6.1726 17 6 5.0928 5.4600 5.9692 18 8 5.8951 4.6866 5.4902 19 7 5.4809 6.7022 6.3195 20 6 6.7821 7.0918 6.1339 21 1 7.4964 6.4032 5.7075 22 6 7.1819 8.3728 6.4946 23 7 6.3130 9.2106 7.0140 24 14 8.9552 8.9034 6.2424 25 1 9.1046 9.5052 4.8930 26 1 9.3237 9.9053 7.2748 27 1 9.8469 7.7216 6.3589 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3118 1.6541 -2.1254 34 1 3.1123 4.0231 -1.7426 35 1 2.4239 3.4299 3.3965 36 1 0.7532 1.7959 4.9799 37 1 2.4243 1.2030 5.1357 38 1 2.6079 1.8416 7.5005 39 1 2.1456 3.4753 8.0340 40 1 0.8995 2.3397 7.4622 41 1 4.1428 3.0300 6.1860 42 1 3.0033 5.6845 5.6003 43 1 3.4099 5.0983 7.2309 44 1 4.8392 7.3209 6.7022 45 1 6.5920 10.1049 7.2654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714308179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:28 Heat of formation + Delta-G solvation = -74.167856 kcal Electronic energy + Delta-G solvation = -26568.930269 eV Core-core repulsion = 22711.557195 eV Total energy + Delta-G solvation = -3857.373074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96060 -40.17827 -39.05858 -37.98192 -35.95812 -35.06305 -33.63136 -33.26270 -32.07263 -30.40063 -27.95864 -27.46839 -25.96813 -25.50891 -23.29475 -22.29206 -22.03677 -21.10298 -19.94700 -19.75912 -19.06432 -17.81670 -17.14878 -16.85072 -16.79515 -16.54402 -16.30865 -15.92765 -15.89371 -15.51428 -15.05548 -14.96682 -14.67096 -14.48523 -14.35835 -13.95701 -13.71230 -13.63398 -13.43908 -13.35371 -13.24552 -13.05568 -12.82707 -12.77284 -12.53292 -12.39704 -12.37450 -12.12375 -11.96440 -11.91350 -11.60696 -11.48990 -10.91615 -10.32449 -10.15042 -9.99302 -9.68894 -9.41329 -9.34657 -8.45443 -5.93475 -0.44398 0.54986 0.98544 1.38238 1.42340 1.43237 1.54396 2.08343 2.15569 2.25587 2.29900 2.90474 3.22438 3.53140 3.82960 3.87431 3.90881 4.09959 4.19811 4.31298 4.33770 4.35560 4.48777 4.49537 4.55531 4.61643 4.65356 4.75556 4.78648 4.88683 4.91685 4.99246 5.08521 5.12308 5.25014 5.32908 5.40119 5.42596 5.49757 5.55899 5.89618 6.10597 6.36247 6.51790 6.62268 7.14958 7.17224 7.59211 8.14780 8.71853 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.002640 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.187124 B =10602.916807 C =12323.585254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.025 4.025 4 C -0.155 4.155 5 C -0.220 4.220 6 S 0.200 5.800 7 C -0.302 4.302 8 C 0.583 3.417 9 O -0.562 6.562 10 N -0.708 5.708 11 C 0.137 3.863 12 C 0.075 3.925 13 H 0.099 0.901 14 C -0.175 4.175 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.989 3.011 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.170 0.830 34 H 0.196 0.804 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.346 0.654 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -10.904 -11.018 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 C -0.041 4.041 4 C -0.185 4.185 5 C -0.358 4.358 6 S 0.470 5.530 7 C -0.422 4.422 8 C 0.371 3.629 9 O -0.444 6.444 10 N -0.358 5.358 11 C 0.013 3.987 12 C -0.035 4.035 13 H 0.118 0.882 14 C -0.234 4.234 15 N -0.309 5.309 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.813 3.187 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.187 0.813 34 H 0.213 0.787 35 H 0.242 0.758 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.140 -10.457 -10.922 20.702 hybrid contribution 0.611 -0.134 0.321 0.703 sum -13.529 -10.591 -10.600 20.189 Atomic orbital electron populations 1.21540 0.93810 1.02182 1.01179 1.20402 0.96906 0.90359 1.03346 1.19815 0.95749 0.97736 0.90837 1.20137 1.03991 0.94288 1.00133 1.25675 1.06550 1.01786 1.01742 1.83449 1.59554 1.10070 0.99967 1.24493 1.19100 1.01248 0.97379 1.17169 0.77397 0.84713 0.83668 1.90736 1.48061 1.19818 1.85783 1.45740 1.66501 1.17166 1.06364 1.21418 1.00833 0.96657 0.79803 1.21881 0.89804 0.97519 0.94271 0.88248 1.22370 1.03809 1.01816 0.95405 1.60138 1.05276 1.02048 1.63398 1.21579 0.92805 0.91700 1.00602 1.20903 0.91351 0.82418 0.82720 1.90511 1.56236 1.53981 1.50132 1.41928 1.10611 1.12498 1.56078 1.19623 0.87512 0.98216 1.40692 0.90466 1.25978 1.03656 0.95327 0.96212 1.69659 1.36290 1.07549 1.42600 0.84986 0.77411 0.77961 0.78344 1.19657 1.19634 1.19915 0.91879 0.91381 0.94553 0.89189 0.91244 0.81264 0.78682 0.75770 0.89947 0.92542 0.92304 0.91853 0.89854 0.83500 0.87430 0.91312 0.76965 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.78 71.98 0.70 -1.78 16 2 C -0.07 -1.50 5.50 29.85 0.16 -1.33 16 3 C -0.03 -0.58 5.16 -20.42 -0.11 -0.68 16 4 C -0.15 -2.77 9.96 21.08 0.21 -2.56 16 5 C -0.22 -3.83 10.92 66.82 0.73 -3.10 16 6 S 0.20 4.44 22.16 -56.49 -1.25 3.19 16 7 C -0.30 -7.88 6.45 24.08 0.16 -7.73 16 8 C 0.58 17.03 7.78 86.42 0.67 17.70 16 9 O -0.56 -18.59 13.72 -4.36 -0.06 -18.65 16 10 N -0.71 -18.49 5.38 -467.16 -2.51 -21.00 16 11 C 0.14 3.10 5.37 86.38 0.46 3.57 16 12 C 0.08 1.53 2.74 44.92 0.12 1.65 16 13 H 0.10 1.77 7.80 -2.39 -0.02 1.75 16 14 C -0.17 -2.94 9.16 71.98 0.66 -2.28 16 15 N -0.68 -19.07 5.32 -495.60 -2.64 -21.71 16 16 C 0.07 2.01 5.96 85.56 0.51 2.52 16 17 C 0.44 19.83 7.82 87.66 0.69 20.51 16 18 O -0.62 -33.36 15.78 -3.06 -0.05 -33.41 16 19 N -0.57 -28.40 5.29 -307.00 -1.62 -30.02 16 20 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 21 H 0.08 4.62 7.16 -2.92 -0.02 4.59 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 24 Si 0.99 42.41 29.55 68.60 2.03 44.43 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.86 7.60 -2.39 -0.02 0.84 16 31 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.07 1.84 6.33 -2.39 -0.02 1.82 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.41 10.58 7.26 -92.71 -0.67 9.91 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 39 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.35 10.78 8.17 -89.69 -0.73 10.05 16 42 H 0.11 2.89 8.05 -2.39 -0.02 2.87 16 43 H 0.07 1.84 7.44 -2.38 -0.02 1.82 16 44 H 0.40 18.56 7.90 -92.70 -0.73 17.83 16 45 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -69.83 389.89 -0.67 -70.50 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: -1.10 Total: 46.37 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.25 Total: 8.74 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -6.49 Total: -121.17 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.11 Total: -52.06 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.25 Total: 3.19 kcal Total: -69.83 -0.67 -70.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.672 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds