Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30254 * 125.61847 * 2 1 4 4 C 1.34478 * 108.69520 * 180.02562 * 3 2 1 5 5 C 1.34326 * 107.67202 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.44458 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.46904 * 90.00404 * 6 5 4 8 8 C 1.46905 * 111.00170 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47066 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.91600 * 308.90007 * 9 8 7 11 11 C 1.55162 * 111.00113 * 184.99638 * 9 8 7 12 12 C 1.54318 * 102.94166 * 206.42404 * 11 9 8 13 13 N 1.47021 * 107.27468 * 22.19363 * 12 11 9 14 14 C 1.34774 * 125.65194 * 181.02225 * 13 12 11 15 15 O 1.21281 * 120.00138 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99741 * 0.02857 * 14 13 12 17 17 S 1.81005 * 109.47173 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47429 * 108.69859 * 1.28731 * 13 12 11 27 27 O 1.33973 * 125.61532 * 180.33603 * 2 1 3 28 28 H 1.09002 * 109.47007 * 89.97159 * 1 2 3 29 29 H 1.08997 * 109.47124 * 209.98010 * 1 2 3 30 30 H 1.09009 * 109.46894 * 329.97581 * 1 2 3 31 31 H 1.07999 * 126.16359 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47070 * 330.00295 * 6 5 4 33 33 H 1.08999 * 109.47097 * 210.00567 * 6 5 4 34 34 H 1.00903 * 111.00332 * 303.95695 * 7 6 5 35 35 H 1.08995 * 109.46952 * 59.99874 * 8 7 6 36 36 H 1.09005 * 109.46642 * 299.99924 * 8 7 6 37 37 H 1.09009 * 110.71604 * 88.05920 * 11 9 8 38 38 H 1.08997 * 110.72358 * 324.78730 * 11 9 8 39 39 H 1.09004 * 109.88307 * 262.77850 * 12 11 9 40 40 H 1.08995 * 110.01154 * 141.68713 * 12 11 9 41 41 H 1.09005 * 109.47318 * 59.99759 * 16 14 13 42 42 H 1.09002 * 109.47150 * 299.99724 * 16 14 13 43 43 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.36335 * 94.48652 * 26 13 12 45 45 H 1.09003 * 110.36340 * 216.80505 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 3.5697 -0.6757 -0.0004 6 6 4.7937 -1.5551 -0.0014 7 7 5.1925 -1.8406 1.3833 8 6 6.3855 -2.6970 1.4216 9 6 6.7692 -2.9723 2.8769 10 1 6.8347 -2.0440 3.4443 11 6 8.0972 -3.7703 2.9605 12 6 7.9684 -4.5157 4.3055 13 7 6.5357 -4.5933 4.6263 14 6 6.0076 -5.1537 5.7324 15 8 4.8056 -5.1612 5.8935 16 6 6.9107 -5.7709 6.7690 17 16 5.9098 -6.4331 8.1239 18 6 7.1827 -7.0750 9.1592 19 1 8.2172 -6.9840 8.8628 20 6 6.8559 -7.6977 10.3559 21 7 7.8069 -8.1777 11.1292 22 14 5.0666 -7.8546 10.8691 23 1 4.6747 -6.6656 11.6677 24 1 4.2105 -7.9421 9.6589 25 1 4.8924 -9.0806 11.6884 26 6 5.7721 -3.9622 3.5344 27 8 2.2872 -1.0891 -0.0064 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 4.4157 1.3160 -0.0011 32 1 5.6075 -1.0444 -0.5160 33 1 4.5690 -2.4899 -0.5149 34 1 5.3439 -0.9869 1.8994 35 1 7.2103 -2.1938 0.9170 36 1 6.1723 -3.6398 0.9178 37 1 8.9527 -3.0948 2.9742 38 1 8.1754 -4.4766 2.1341 39 1 8.4937 -3.9653 5.0862 40 1 8.3834 -5.5197 4.2168 41 1 7.5903 -5.0120 7.1570 42 1 7.4872 -6.5769 6.3150 43 1 7.5785 -8.6126 11.9657 44 1 5.4491 -4.7136 2.8140 45 1 4.9124 -3.4245 3.9343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714338607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -11.032488 kcal Electronic energy + Delta-G solvation = -25663.682845 eV Core-core repulsion = 21809.047526 eV Total energy + Delta-G solvation = -3854.635319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.68455 -39.94286 -37.90640 -36.39572 -35.10801 -33.14506 -32.42735 -31.91320 -29.85058 -29.63271 -28.16351 -25.75738 -25.49624 -24.26320 -22.85919 -22.50543 -21.47428 -20.71225 -19.36443 -17.73454 -17.47324 -17.19242 -16.66855 -16.53353 -16.19512 -15.34794 -15.11166 -15.01451 -14.88116 -14.45053 -14.35402 -13.95991 -13.80474 -13.68547 -13.47558 -13.24838 -13.08405 -12.87084 -12.71920 -12.55101 -12.54263 -12.17053 -11.86836 -11.64337 -11.47833 -11.24653 -11.23156 -11.01288 -10.98126 -10.87520 -10.58276 -9.84335 -9.48593 -9.23384 -8.99058 -8.93898 -8.52997 -8.47858 -6.90480 -6.27857 -3.99357 1.00884 2.23110 2.28965 2.72760 2.99114 3.23487 3.34706 3.52348 3.56096 3.63127 3.69928 4.21355 4.29379 4.33636 4.35804 4.43334 4.57251 4.58433 4.73282 4.82590 4.92261 4.93688 4.98485 5.04219 5.05617 5.11249 5.14565 5.21548 5.31968 5.32742 5.46162 5.49756 5.57043 5.63045 5.69244 5.85234 5.91406 5.92661 5.95661 6.03612 6.32424 6.40342 6.74588 7.34860 7.62902 7.95217 8.42442 8.48457 9.18449 10.81292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.001894 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.944499 B =14776.213663 C =16193.790473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.192 3.808 3 N -0.487 5.487 4 C -0.034 4.034 5 C -0.041 4.041 6 C 0.144 3.856 7 N -0.687 5.687 8 C 0.072 3.928 9 C -0.100 4.100 10 H 0.086 0.914 11 C -0.124 4.124 12 C 0.100 3.900 13 N -0.628 5.628 14 C 0.546 3.454 15 O -0.518 6.518 16 C -0.117 4.117 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.274 1.274 26 C 0.123 3.877 27 O -0.192 6.192 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.347 0.653 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.065 0.935 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 16.493 -27.962 32.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.014 4.014 3 N -0.217 5.217 4 C -0.174 4.174 5 C -0.095 4.095 6 C 0.015 3.985 7 N -0.319 5.319 8 C -0.057 4.057 9 C -0.120 4.120 10 H 0.105 0.895 11 C -0.163 4.163 12 C -0.023 4.023 13 N -0.365 5.365 14 C 0.334 3.666 15 O -0.392 6.392 16 C -0.268 4.268 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.199 1.199 26 C 0.001 3.999 27 O -0.078 6.078 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.198 0.802 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.064 16.363 -27.401 32.486 hybrid contribution 1.979 -0.155 0.053 1.985 sum -4.085 16.209 -27.348 32.052 Atomic orbital electron populations 1.20292 0.81242 1.05411 1.04681 1.26362 0.96582 0.78637 0.99855 1.70458 1.02021 1.30354 1.18864 1.23076 0.95281 0.92885 1.06170 1.23208 0.83839 0.94874 1.07582 1.20225 0.88965 0.98119 0.91154 1.60416 1.37202 1.22293 1.12003 1.21932 0.90065 0.97760 0.95917 1.22411 0.95084 0.99023 0.95468 0.89518 1.22659 0.97393 0.99064 0.97162 1.21999 0.82569 1.00919 0.96811 1.48504 1.07416 1.59753 1.20818 1.19966 0.88765 0.77262 0.80576 1.90709 1.15169 1.56936 1.76389 1.23257 1.01825 1.03194 0.98507 1.84797 1.13453 1.74408 1.18994 1.22310 0.93995 1.43416 1.07097 0.89415 1.24713 0.98026 0.93568 0.95005 1.69941 1.32500 1.37015 1.12253 0.86733 0.85305 0.78632 0.81187 1.19201 1.15897 1.19945 1.22140 0.94853 0.94464 0.88490 1.84420 1.16517 1.37605 1.69277 0.88912 0.89094 0.88014 0.80151 0.91459 0.88825 0.83397 0.94131 0.90091 0.89889 0.90296 0.91184 0.91116 0.88664 0.88610 0.91961 0.91676 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.19 1.77 8.34 -12.94 -0.11 1.66 16 3 N -0.49 -5.11 11.29 -11.10 -0.13 -5.24 16 4 C -0.03 -0.30 11.80 -17.77 -0.21 -0.51 16 5 C -0.04 -0.35 6.90 -35.69 -0.25 -0.59 16 6 C 0.14 0.83 6.23 -4.98 -0.03 0.80 16 7 N -0.69 -4.58 6.44 -115.06 -0.74 -5.32 16 8 C 0.07 0.40 5.14 -3.82 -0.02 0.38 16 9 C -0.10 -0.75 3.21 -88.35 -0.28 -1.03 16 10 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 11 C -0.12 -0.82 6.42 -24.90 -0.16 -0.98 16 12 C 0.10 1.01 6.48 -3.07 -0.02 0.99 16 13 N -0.63 -8.87 3.32 -170.39 -0.57 -9.44 16 14 C 0.55 10.42 7.87 -10.99 -0.09 10.33 16 15 O -0.52 -11.89 16.12 5.56 0.09 -11.80 16 16 C -0.12 -2.37 5.35 36.01 0.19 -2.18 16 17 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 16 18 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 22 Si 0.86 22.04 27.74 -169.99 -4.72 17.32 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.24 -6.06 6.74 56.52 0.38 -5.67 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.12 1.45 6.33 -2.41 -0.02 1.43 16 27 O -0.19 -1.95 10.78 5.36 0.06 -1.89 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.35 2.16 8.72 -39.29 -0.34 1.81 16 35 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.08 0.47 7.96 -51.93 -0.41 0.05 16 37 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 42 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 45 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -37.39 392.05 -8.78 -46.17 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.07 Total: -2.36 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.39 Total: -1.73 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.66 Total: -45.93 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.15 Total: -13.68 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.32 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.39 -8.78 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714338607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.138 kcal (2) G-P(sol) polarization free energy of solvation -37.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds