Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30254 * 125.61847 * 2 1 4 4 C 1.34478 * 108.69520 * 180.02562 * 3 2 1 5 5 C 1.34326 * 107.67202 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.44458 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.46904 * 90.00404 * 6 5 4 8 8 C 1.46905 * 111.00170 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47066 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.91600 * 308.90007 * 9 8 7 11 11 C 1.55162 * 111.00113 * 184.99638 * 9 8 7 12 12 C 1.54318 * 102.94166 * 206.42404 * 11 9 8 13 13 N 1.47021 * 107.27468 * 22.19363 * 12 11 9 14 14 C 1.34774 * 125.65194 * 181.02225 * 13 12 11 15 15 O 1.21281 * 120.00138 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99741 * 0.02857 * 14 13 12 17 17 S 1.81005 * 109.47173 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47429 * 108.69859 * 1.28731 * 13 12 11 27 27 O 1.33973 * 125.61532 * 180.33603 * 2 1 3 28 28 H 1.09002 * 109.47007 * 89.97159 * 1 2 3 29 29 H 1.08997 * 109.47124 * 209.98010 * 1 2 3 30 30 H 1.09009 * 109.46894 * 329.97581 * 1 2 3 31 31 H 1.07999 * 126.16359 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47070 * 330.00295 * 6 5 4 33 33 H 1.08999 * 109.47097 * 210.00567 * 6 5 4 34 34 H 1.00903 * 111.00332 * 303.95695 * 7 6 5 35 35 H 1.08995 * 109.46952 * 59.99874 * 8 7 6 36 36 H 1.09005 * 109.46642 * 299.99924 * 8 7 6 37 37 H 1.09009 * 110.71604 * 88.05920 * 11 9 8 38 38 H 1.08997 * 110.72358 * 324.78730 * 11 9 8 39 39 H 1.09004 * 109.88307 * 262.77850 * 12 11 9 40 40 H 1.08995 * 110.01154 * 141.68713 * 12 11 9 41 41 H 1.09005 * 109.47318 * 59.99759 * 16 14 13 42 42 H 1.09002 * 109.47150 * 299.99724 * 16 14 13 43 43 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.36335 * 94.48652 * 26 13 12 45 45 H 1.09003 * 110.36340 * 216.80505 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 3.5697 -0.6757 -0.0004 6 6 4.7937 -1.5551 -0.0014 7 7 5.1925 -1.8406 1.3833 8 6 6.3855 -2.6970 1.4216 9 6 6.7692 -2.9723 2.8769 10 1 6.8347 -2.0440 3.4443 11 6 8.0972 -3.7703 2.9605 12 6 7.9684 -4.5157 4.3055 13 7 6.5357 -4.5933 4.6263 14 6 6.0076 -5.1537 5.7324 15 8 4.8056 -5.1612 5.8935 16 6 6.9107 -5.7709 6.7690 17 16 5.9098 -6.4331 8.1239 18 6 7.1827 -7.0750 9.1592 19 1 8.2172 -6.9840 8.8628 20 6 6.8559 -7.6977 10.3559 21 7 7.8069 -8.1777 11.1292 22 14 5.0666 -7.8546 10.8691 23 1 4.6747 -6.6656 11.6677 24 1 4.2105 -7.9421 9.6589 25 1 4.8924 -9.0806 11.6884 26 6 5.7721 -3.9622 3.5344 27 8 2.2872 -1.0891 -0.0064 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 4.4157 1.3160 -0.0011 32 1 5.6075 -1.0444 -0.5160 33 1 4.5690 -2.4899 -0.5149 34 1 5.3439 -0.9869 1.8994 35 1 7.2103 -2.1938 0.9170 36 1 6.1723 -3.6398 0.9178 37 1 8.9527 -3.0948 2.9742 38 1 8.1754 -4.4766 2.1341 39 1 8.4937 -3.9653 5.0862 40 1 8.3834 -5.5197 4.2168 41 1 7.5903 -5.0120 7.1570 42 1 7.4872 -6.5769 6.3150 43 1 7.5785 -8.6126 11.9657 44 1 5.4491 -4.7136 2.8140 45 1 4.9124 -3.4245 3.9343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714338607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = -40.330004 kcal Electronic energy + Delta-G solvation = -25664.953281 eV Core-core repulsion = 21809.047526 eV Total energy + Delta-G solvation = -3855.905755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.31808 -41.09284 -38.94121 -37.11603 -35.77828 -34.69032 -33.91515 -32.67418 -30.94768 -30.52254 -28.95352 -27.87823 -26.34154 -24.99110 -23.60831 -23.11223 -22.08285 -21.37223 -20.76098 -19.59789 -18.18889 -18.00726 -17.84221 -17.48889 -17.14076 -16.83036 -16.43228 -16.05445 -15.69581 -15.48149 -15.39934 -14.98811 -14.91789 -14.49680 -14.40581 -14.25659 -13.86490 -13.82790 -13.58598 -13.44946 -13.35241 -13.29108 -13.03599 -13.02400 -12.68734 -12.68139 -12.32424 -12.09383 -11.94230 -11.87143 -11.60324 -11.52398 -11.18734 -11.03679 -10.56256 -9.78371 -9.71233 -9.38986 -9.03418 -8.53174 -6.24721 0.39815 0.94644 1.29938 1.44349 1.49743 1.52377 1.63681 1.71975 2.07243 2.23878 2.66536 2.84828 3.07872 3.19437 3.50764 3.63043 3.75888 3.84196 3.92225 4.04087 4.12414 4.17271 4.31736 4.36733 4.39488 4.42949 4.49277 4.61004 4.64050 4.67593 4.70220 4.77201 4.79342 4.92193 5.00662 5.02767 5.07501 5.11039 5.29681 5.36527 5.42470 5.69222 5.91547 6.09311 6.31771 6.36891 6.71836 6.91852 7.04936 8.59062 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.001894 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.944499 B =14776.213663 C =16193.790473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.181 3.819 3 N -0.519 5.519 4 C -0.046 4.046 5 C -0.049 4.049 6 C 0.150 3.850 7 N -0.707 5.707 8 C 0.079 3.921 9 C -0.086 4.086 10 H 0.088 0.912 11 C -0.110 4.110 12 C 0.085 3.915 13 N -0.618 5.618 14 C 0.543 3.457 15 O -0.568 6.568 16 C -0.101 4.101 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.914 5.914 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.239 1.239 25 H -0.257 1.257 26 C 0.117 3.883 27 O -0.212 6.212 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.204 0.796 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.349 0.651 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.066 0.934 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 17.404 -30.059 34.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.026 4.026 3 N -0.250 5.250 4 C -0.185 4.185 5 C -0.103 4.103 6 C 0.021 3.979 7 N -0.340 5.340 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.106 0.894 11 C -0.148 4.148 12 C -0.037 4.037 13 N -0.353 5.353 14 C 0.331 3.669 15 O -0.447 6.447 16 C -0.251 4.251 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.552 5.552 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.163 1.163 25 H -0.181 1.181 26 C -0.005 4.005 27 O -0.099 6.099 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.221 0.779 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.158 17.291 -29.540 34.615 hybrid contribution 1.810 -0.365 0.582 1.936 sum -3.348 16.926 -28.958 33.709 Atomic orbital electron populations 1.20505 0.78870 1.06146 1.06081 1.27182 0.97977 0.78269 0.99147 1.70458 1.03153 1.31242 1.20138 1.23503 0.95421 0.93493 1.06040 1.23760 0.83979 0.95397 1.07136 1.20325 0.88581 0.98045 0.90931 1.60368 1.38158 1.22746 1.12706 1.21893 0.90605 0.97993 0.94434 1.22355 0.94051 0.97796 0.96398 0.89391 1.22678 0.97577 0.99249 0.95295 1.22415 0.79767 1.02205 0.99271 1.48514 1.09823 1.57482 1.19470 1.19704 0.87813 0.77714 0.81668 1.90684 1.16881 1.59365 1.77795 1.23198 1.01233 1.03889 0.96817 1.84751 1.14354 1.74910 1.21153 1.22423 0.93740 1.43507 1.07919 0.91864 1.25541 1.01923 0.93298 0.95092 1.70010 1.34432 1.37831 1.12948 0.85883 0.80439 0.79366 0.80787 1.18687 1.16304 1.18092 1.22339 0.95232 0.95225 0.87658 1.84425 1.17509 1.38339 1.69665 0.87082 0.88205 0.87334 0.77926 0.88559 0.88859 0.83221 0.91160 0.89981 0.87056 0.88580 0.90606 0.90440 0.87230 0.87150 0.91306 0.91542 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.18 3.31 8.34 88.34 0.74 4.05 16 3 N -0.52 -10.82 11.29 -303.82 -3.43 -14.26 16 4 C -0.05 -0.75 11.80 83.39 0.98 0.23 16 5 C -0.05 -0.79 6.90 24.79 0.17 -0.62 16 6 C 0.15 1.40 6.23 85.56 0.53 1.94 16 7 N -0.71 -7.91 6.44 -517.93 -3.33 -11.24 16 8 C 0.08 0.60 5.14 86.30 0.44 1.05 16 9 C -0.09 -1.03 3.21 -9.32 -0.03 -1.06 16 10 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 11 C -0.11 -0.98 6.42 31.78 0.20 -0.78 16 12 C 0.09 1.48 6.48 86.73 0.56 2.05 16 13 N -0.62 -16.74 3.32 -811.37 -2.70 -19.44 16 14 C 0.54 20.67 7.87 87.66 0.69 21.36 16 15 O -0.57 -26.65 16.12 -3.03 -0.05 -26.70 16 16 C -0.10 -4.03 5.35 71.24 0.38 -3.65 16 17 S -0.18 -9.34 18.55 -56.49 -1.05 -10.39 16 18 C -0.53 -31.26 10.04 67.96 0.68 -30.57 16 19 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 20 C 0.05 2.80 5.50 84.86 0.47 3.26 16 21 N -0.91 -55.93 13.97 21.65 0.30 -55.62 16 22 Si 0.91 45.70 27.74 68.60 1.90 47.60 16 23 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.12 2.64 6.33 86.93 0.55 3.19 16 27 O -0.21 -4.29 10.78 -3.74 -0.04 -4.33 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.82 8.14 -2.38 -0.02 0.81 16 31 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.35 3.65 8.72 -89.69 -0.78 2.86 16 35 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.08 0.65 7.96 -2.38 -0.02 0.63 16 37 H 0.11 0.49 8.14 -2.38 -0.02 0.48 16 38 H 0.10 0.61 8.04 -2.39 -0.02 0.59 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 42 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 43 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.07 1.49 7.91 -2.39 -0.02 1.47 16 45 H 0.05 1.49 8.03 -2.39 -0.02 1.47 16 Total: -1.00 -83.95 392.05 -1.10 -85.04 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.17 Total: 8.68 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 7.12 Total: 0.65 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -9.16 Total: -100.56 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.09 Total: -31.03 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.39 kcal Total: -83.95 -1.10 -85.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714338607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.714 kcal (2) G-P(sol) polarization free energy of solvation -83.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds