Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.61884 * 2 1 4 4 C 1.34473 * 108.69973 * 180.15013 * 3 2 1 5 5 C 1.50706 * 126.16444 * 179.82792 * 4 3 2 6 6 N 1.46895 * 109.46904 * 274.68561 * 5 4 3 7 7 C 1.46905 * 111.00170 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47066 * 180.02562 * 7 6 5 9 9 H 1.08995 * 110.91600 * 308.90007 * 8 7 6 10 10 C 1.55162 * 111.00113 * 184.99638 * 8 7 6 11 11 C 1.54318 * 102.94166 * 206.42404 * 10 8 7 12 12 N 1.47021 * 107.27468 * 22.19363 * 11 10 8 13 13 C 1.34774 * 125.65194 * 181.02225 * 12 11 10 14 14 O 1.21281 * 120.00138 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.99741 * 0.02857 * 13 12 11 16 16 S 1.81005 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76189 * 100.00097 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00034 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47429 * 108.69859 * 1.28731 * 12 11 10 26 26 C 1.34331 * 107.66856 * 359.55963 * 4 3 2 27 27 O 1.33969 * 125.61894 * 179.65921 * 2 1 3 28 28 H 1.09001 * 109.47100 * 180.32029 * 1 2 3 29 29 H 1.09000 * 109.47042 * 300.31646 * 1 2 3 30 30 H 1.09000 * 109.47192 * 60.31378 * 1 2 3 31 31 H 1.08999 * 109.47070 * 154.68452 * 5 4 3 32 32 H 1.08999 * 109.47097 * 34.68724 * 5 4 3 33 33 H 1.00903 * 111.00332 * 303.95695 * 6 5 4 34 34 H 1.08995 * 109.46952 * 59.99874 * 7 6 5 35 35 H 1.09005 * 109.46642 * 299.99924 * 7 6 5 36 36 H 1.09009 * 110.71604 * 88.05920 * 10 8 7 37 37 H 1.08997 * 110.72358 * 324.78730 * 10 8 7 38 38 H 1.09004 * 109.88307 * 262.77850 * 11 10 8 39 39 H 1.08995 * 110.01154 * 141.68713 * 11 10 8 40 40 H 1.09005 * 109.47318 * 59.99759 * 15 13 12 41 41 H 1.09002 * 109.47150 * 299.99724 * 15 13 12 42 42 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.36335 * 94.48652 * 25 12 11 44 44 H 1.09003 * 110.36340 * 216.80505 * 25 12 11 45 45 H 1.08000 * 126.43911 * 180.24343 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 -0.0033 5 6 4.7570 1.5727 -0.0082 6 7 5.0764 1.9554 -1.3900 7 6 6.2488 2.8395 -1.4339 8 6 6.5493 3.2162 -2.8860 9 1 6.6028 2.3279 -3.5154 10 6 7.8553 4.0480 -2.9858 11 6 7.6410 4.8749 -4.2710 12 7 6.1921 4.9402 -4.5117 13 6 5.5953 5.5580 -5.5501 14 8 4.3865 5.5484 -5.6482 15 6 6.4301 6.2608 -6.5895 16 16 5.3461 6.9855 -7.8450 17 6 6.5496 7.7213 -8.9006 18 1 7.6000 7.6352 -8.6644 19 6 6.1479 8.4118 -10.0357 20 7 7.0470 8.9620 -10.8241 21 14 4.3312 8.5603 -10.4445 22 1 3.9207 7.4162 -11.2977 23 1 3.5388 8.5505 -9.1886 24 1 4.0899 9.8320 -11.1722 25 6 5.4998 4.2232 -3.4253 26 6 3.5697 -0.6757 0.0044 27 8 2.2872 -1.0890 0.0065 28 1 -0.3633 -1.0277 0.0057 29 1 -0.3633 0.5187 0.8871 30 1 -0.3633 0.5089 -0.8928 31 1 5.6068 1.0488 0.4294 32 1 4.5417 2.4673 0.5761 33 1 5.2168 1.1402 -1.9678 34 1 7.1087 2.3240 -1.0064 35 1 6.0442 3.7430 -0.8594 36 1 8.7219 3.3946 -3.0876 37 1 7.9634 4.7016 -2.1203 38 1 8.1348 4.3879 -5.1119 39 1 8.0404 5.8804 -4.1386 40 1 7.1028 5.5442 -7.0607 41 1 7.0140 7.0491 -6.1144 42 1 6.7662 9.4441 -11.6175 43 1 5.2008 4.9193 -2.6417 44 1 4.6308 3.6927 -3.8145 45 1 4.4469 -1.3057 0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714339129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -11.254406 kcal Electronic energy + Delta-G solvation = -25646.249465 eV Core-core repulsion = 21791.604522 eV Total energy + Delta-G solvation = -3854.644942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.69812 -39.88610 -37.85572 -36.52908 -34.91906 -32.98567 -32.40944 -31.82227 -29.66357 -29.39940 -28.10072 -26.24513 -25.57408 -24.32070 -22.73900 -22.02067 -21.44761 -20.60935 -19.31317 -17.71360 -17.55615 -17.13871 -16.63380 -16.49437 -16.17218 -15.31778 -15.06845 -14.98402 -14.84885 -14.46633 -14.41796 -13.96786 -13.77008 -13.58840 -13.52380 -13.18956 -12.99831 -12.82876 -12.66660 -12.44485 -12.38746 -12.09343 -11.82381 -11.58500 -11.27267 -11.19930 -11.13085 -10.98285 -10.93067 -10.82202 -10.55790 -9.82404 -9.44124 -9.21297 -8.97266 -8.82066 -8.47876 -8.45434 -6.88225 -6.26124 -3.97368 1.04672 2.23029 2.37341 2.76153 3.03444 3.26758 3.36291 3.53791 3.54302 3.65072 3.78441 4.27621 4.35837 4.36537 4.41349 4.44710 4.56091 4.74959 4.79515 4.92931 4.96460 4.98195 5.07684 5.10922 5.12354 5.13061 5.25670 5.27046 5.38259 5.41876 5.51924 5.54493 5.55407 5.61375 5.73526 5.88999 5.90508 5.98375 6.02801 6.06649 6.44689 6.51964 6.90670 7.40380 7.67935 7.96990 8.44244 8.52940 9.20253 10.83030 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.001896 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.379924 B =14761.961302 C =16193.093526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.466 5.466 4 C -0.005 4.005 5 C 0.141 3.859 6 N -0.682 5.682 7 C 0.073 3.927 8 C -0.100 4.100 9 H 0.085 0.915 10 C -0.125 4.125 11 C 0.101 3.899 12 N -0.628 5.628 13 C 0.546 3.454 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.274 1.274 25 C 0.124 3.876 26 C -0.076 4.076 27 O -0.204 6.204 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.342 0.658 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.270 0.730 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -21.186 26.907 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 N -0.196 5.196 4 C -0.125 4.125 5 C 0.012 3.988 6 N -0.314 5.314 7 C -0.057 4.057 8 C -0.119 4.119 9 H 0.103 0.897 10 C -0.163 4.163 11 C -0.023 4.023 12 N -0.365 5.365 13 C 0.334 3.666 14 O -0.392 6.392 15 C -0.268 4.268 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.200 1.200 25 C 0.001 3.999 26 C -0.148 4.148 27 O -0.091 6.091 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.523 -19.935 26.513 33.479 hybrid contribution 2.040 -1.144 -0.169 2.345 sum -2.483 -21.079 26.344 33.830 Atomic orbital electron populations 1.20273 0.81240 1.04677 1.05317 1.26429 0.96661 0.78534 1.00110 1.70366 1.01541 1.29982 1.17683 1.21598 0.93330 0.92188 1.05396 1.20112 0.90538 0.97259 0.90859 1.60350 1.39628 1.22047 1.09330 1.21916 0.90536 0.97309 0.95888 1.22404 0.95053 0.98452 0.96000 0.89671 1.22659 0.97532 0.98444 0.97668 1.21994 0.82010 1.00600 0.97675 1.48510 1.07232 1.55711 1.25030 1.19956 0.88228 0.77855 0.80571 1.90710 1.14179 1.59164 1.75145 1.23256 1.02380 1.02503 0.98623 1.84797 1.12877 1.68679 1.25307 1.22315 0.94470 1.39385 1.10606 0.89424 1.24714 0.98282 0.93646 0.94689 1.69942 1.33685 1.34086 1.14040 0.86731 0.85377 0.78485 0.81257 1.19217 1.15874 1.19960 1.22138 0.95528 0.93174 0.89030 1.24756 0.85131 0.96120 1.08769 1.84451 1.16851 1.37932 1.69845 0.89432 0.88462 0.88259 0.93423 0.89054 0.83982 0.94486 0.90206 0.89974 0.90317 0.91244 0.91159 0.88693 0.88624 0.91979 0.91636 0.90098 0.77093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.10 16 2 C 0.19 1.69 8.34 -12.95 -0.11 1.58 16 3 N -0.47 -5.17 11.29 -7.35 -0.08 -5.25 16 4 C 0.00 -0.04 6.62 -82.81 -0.55 -0.59 16 5 C 0.14 1.00 6.23 -4.98 -0.03 0.97 16 6 N -0.68 -5.31 6.44 -115.06 -0.74 -6.05 16 7 C 0.07 0.48 5.14 -3.82 -0.02 0.46 16 8 C -0.10 -0.82 3.21 -88.35 -0.28 -1.10 16 9 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 10 C -0.12 -0.90 6.42 -24.90 -0.16 -1.06 16 11 C 0.10 1.07 6.48 -3.07 -0.02 1.05 16 12 N -0.63 -9.22 3.32 -170.39 -0.57 -9.78 16 13 C 0.55 10.66 7.87 -10.99 -0.09 10.58 16 14 O -0.52 -12.13 16.12 5.56 0.09 -12.05 16 15 C -0.12 -2.41 5.35 36.01 0.19 -2.21 16 16 S -0.14 -3.76 18.55 -107.50 -1.99 -5.75 16 17 C -0.52 -15.27 10.04 30.94 0.31 -14.96 16 18 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 19 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.86 13.97 55.49 0.78 -26.09 16 21 Si 0.86 22.19 27.74 -169.99 -4.72 17.48 16 22 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 24 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.12 1.56 6.33 -2.41 -0.02 1.54 16 26 C -0.08 -0.54 12.08 29.35 0.35 -0.19 16 27 O -0.20 -1.77 10.78 5.38 0.06 -1.71 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.34 2.40 8.72 -39.29 -0.34 2.06 16 34 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 36 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 41 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 42 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 44 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 45 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -37.85 392.04 -8.47 -46.32 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.07 Total: -1.93 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.13 Total: -1.10 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.62 Total: -47.17 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.15 Total: -13.76 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.72 Total: 17.48 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.85 -8.47 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714339129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.065 kcal (2) G-P(sol) polarization free energy of solvation -37.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds