Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.61884 * 2 1 4 4 C 1.34473 * 108.69973 * 180.15013 * 3 2 1 5 5 C 1.50706 * 126.16444 * 179.82792 * 4 3 2 6 6 N 1.46895 * 109.46904 * 274.68561 * 5 4 3 7 7 C 1.46905 * 111.00170 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47066 * 180.02562 * 7 6 5 9 9 H 1.08995 * 110.91600 * 308.90007 * 8 7 6 10 10 C 1.55162 * 111.00113 * 184.99638 * 8 7 6 11 11 C 1.54318 * 102.94166 * 206.42404 * 10 8 7 12 12 N 1.47021 * 107.27468 * 22.19363 * 11 10 8 13 13 C 1.34774 * 125.65194 * 181.02225 * 12 11 10 14 14 O 1.21281 * 120.00138 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.99741 * 0.02857 * 13 12 11 16 16 S 1.81005 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76189 * 100.00097 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00034 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47429 * 108.69859 * 1.28731 * 12 11 10 26 26 C 1.34331 * 107.66856 * 359.55963 * 4 3 2 27 27 O 1.33969 * 125.61894 * 179.65921 * 2 1 3 28 28 H 1.09001 * 109.47100 * 180.32029 * 1 2 3 29 29 H 1.09000 * 109.47042 * 300.31646 * 1 2 3 30 30 H 1.09000 * 109.47192 * 60.31378 * 1 2 3 31 31 H 1.08999 * 109.47070 * 154.68452 * 5 4 3 32 32 H 1.08999 * 109.47097 * 34.68724 * 5 4 3 33 33 H 1.00903 * 111.00332 * 303.95695 * 6 5 4 34 34 H 1.08995 * 109.46952 * 59.99874 * 7 6 5 35 35 H 1.09005 * 109.46642 * 299.99924 * 7 6 5 36 36 H 1.09009 * 110.71604 * 88.05920 * 10 8 7 37 37 H 1.08997 * 110.72358 * 324.78730 * 10 8 7 38 38 H 1.09004 * 109.88307 * 262.77850 * 11 10 8 39 39 H 1.08995 * 110.01154 * 141.68713 * 11 10 8 40 40 H 1.09005 * 109.47318 * 59.99759 * 15 13 12 41 41 H 1.09002 * 109.47150 * 299.99724 * 15 13 12 42 42 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.36335 * 94.48652 * 25 12 11 44 44 H 1.09003 * 110.36340 * 216.80505 * 25 12 11 45 45 H 1.08000 * 126.43911 * 180.24343 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 -0.0033 5 6 4.7570 1.5727 -0.0082 6 7 5.0764 1.9554 -1.3900 7 6 6.2488 2.8395 -1.4339 8 6 6.5493 3.2162 -2.8860 9 1 6.6028 2.3279 -3.5154 10 6 7.8553 4.0480 -2.9858 11 6 7.6410 4.8749 -4.2710 12 7 6.1921 4.9402 -4.5117 13 6 5.5953 5.5580 -5.5501 14 8 4.3865 5.5484 -5.6482 15 6 6.4301 6.2608 -6.5895 16 16 5.3461 6.9855 -7.8450 17 6 6.5496 7.7213 -8.9006 18 1 7.6000 7.6352 -8.6644 19 6 6.1479 8.4118 -10.0357 20 7 7.0470 8.9620 -10.8241 21 14 4.3312 8.5603 -10.4445 22 1 3.9207 7.4162 -11.2977 23 1 3.5388 8.5505 -9.1886 24 1 4.0899 9.8320 -11.1722 25 6 5.4998 4.2232 -3.4253 26 6 3.5697 -0.6757 0.0044 27 8 2.2872 -1.0890 0.0065 28 1 -0.3633 -1.0277 0.0057 29 1 -0.3633 0.5187 0.8871 30 1 -0.3633 0.5089 -0.8928 31 1 5.6068 1.0488 0.4294 32 1 4.5417 2.4673 0.5761 33 1 5.2168 1.1402 -1.9678 34 1 7.1087 2.3240 -1.0064 35 1 6.0442 3.7430 -0.8594 36 1 8.7219 3.3946 -3.0876 37 1 7.9634 4.7016 -2.1203 38 1 8.1348 4.3879 -5.1119 39 1 8.0404 5.8804 -4.1386 40 1 7.1028 5.5442 -7.0607 41 1 7.0140 7.0491 -6.1144 42 1 6.7662 9.4441 -11.6175 43 1 5.2008 4.9193 -2.6417 44 1 4.6308 3.6927 -3.8145 45 1 4.4469 -1.3057 0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714339129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = -41.322611 kcal Electronic energy + Delta-G solvation = -25647.553320 eV Core-core repulsion = 21791.604522 eV Total energy + Delta-G solvation = -3855.948797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.28556 -41.09135 -38.94012 -37.29772 -35.59782 -34.68807 -33.72933 -32.65091 -30.91590 -30.28461 -28.78926 -27.88450 -26.90906 -25.17599 -23.54452 -22.62474 -22.02035 -21.31787 -20.75770 -19.59273 -18.20962 -18.04503 -17.75452 -17.49826 -17.14100 -16.85714 -16.44750 -16.01786 -15.69901 -15.50516 -15.42738 -15.03553 -14.91657 -14.55050 -14.37501 -14.26158 -13.90506 -13.82934 -13.50642 -13.41244 -13.34610 -13.22215 -13.02679 -12.93681 -12.68608 -12.65416 -12.25209 -11.97218 -11.86752 -11.84010 -11.58920 -11.46442 -11.18527 -11.03501 -10.55995 -9.76295 -9.71394 -9.31424 -9.03317 -8.52993 -6.24527 0.48947 0.94631 1.30001 1.44535 1.49855 1.52504 1.61687 1.87951 2.07195 2.24158 2.66795 2.84947 3.04787 3.21968 3.53117 3.63426 3.78598 3.86327 3.94286 4.00934 4.14001 4.31614 4.35620 4.37201 4.42759 4.49228 4.54289 4.61784 4.63153 4.68529 4.76453 4.79354 4.83833 4.92584 4.99955 5.00735 5.08536 5.11227 5.29429 5.35204 5.42423 5.69474 6.02276 6.09490 6.37013 6.42259 6.81510 6.92028 7.05001 8.59241 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.001896 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.379924 B =14761.961302 C =16193.093526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.178 3.822 3 N -0.511 5.511 4 C -0.033 4.033 5 C 0.148 3.852 6 N -0.703 5.703 7 C 0.080 3.920 8 C -0.085 4.085 9 H 0.089 0.911 10 C -0.110 4.110 11 C 0.086 3.914 12 N -0.618 5.618 13 C 0.543 3.457 14 O -0.568 6.568 15 C -0.100 4.100 16 S -0.179 6.179 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.914 5.914 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.240 1.240 24 H -0.257 1.257 25 C 0.119 3.881 26 C -0.067 4.067 27 O -0.213 6.213 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.346 0.654 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.278 0.722 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -22.939 28.685 36.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.029 4.029 3 N -0.242 5.242 4 C -0.152 4.152 5 C 0.019 3.981 6 N -0.336 5.336 7 C -0.049 4.049 8 C -0.104 4.104 9 H 0.107 0.893 10 C -0.148 4.148 11 C -0.036 4.036 12 N -0.353 5.353 13 C 0.331 3.669 14 O -0.448 6.448 15 C -0.251 4.251 16 S 0.048 5.952 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.552 5.552 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.164 1.164 24 H -0.181 1.181 25 C -0.003 4.003 26 C -0.138 4.138 27 O -0.100 6.100 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -3.320 -21.706 28.327 35.842 hybrid contribution 1.787 -0.672 -0.604 2.003 sum -1.533 -22.378 27.723 35.661 Atomic orbital electron populations 1.20455 0.79045 1.06188 1.05744 1.27137 0.97951 0.78273 0.99535 1.70345 1.03071 1.31487 1.19269 1.21998 0.93208 0.93422 1.06578 1.20097 0.90887 0.96740 0.90387 1.60292 1.40614 1.22649 1.10028 1.21863 0.91247 0.97301 0.94476 1.22344 0.93822 0.97305 0.96972 0.89307 1.22679 0.97711 0.98279 0.96149 1.22414 0.79080 1.02063 1.00049 1.48523 1.09528 1.53600 1.23631 1.19725 0.87419 0.78286 0.81510 1.90685 1.16007 1.61456 1.76617 1.23194 1.01426 1.03075 0.97377 1.84762 1.14262 1.69206 1.26974 1.22421 0.94059 1.39630 1.11444 0.91843 1.25539 1.02312 0.93369 0.94636 1.70010 1.35609 1.34855 1.14735 0.85883 0.80373 0.79302 0.80919 1.18654 1.16363 1.18068 1.22305 0.96146 0.93845 0.88012 1.25472 0.85503 0.96076 1.06711 1.84464 1.17599 1.38049 1.69896 0.87390 0.87460 0.88241 0.90383 0.90534 0.83552 0.91455 0.90657 0.86947 0.88779 0.90454 0.90444 0.87157 0.87151 0.91302 0.91891 0.93042 0.73339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 71.24 0.75 0.23 16 2 C 0.18 3.15 8.34 88.34 0.74 3.89 16 3 N -0.51 -11.49 11.29 -291.97 -3.30 -14.79 16 4 C -0.03 -0.56 6.62 41.26 0.27 -0.28 16 5 C 0.15 1.86 6.23 85.56 0.53 2.39 16 6 N -0.70 -9.79 6.44 -517.93 -3.33 -13.12 16 7 C 0.08 0.82 5.14 86.30 0.44 1.26 16 8 C -0.08 -1.16 3.21 -9.32 -0.03 -1.19 16 9 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 10 C -0.11 -1.14 6.42 31.78 0.20 -0.93 16 11 C 0.09 1.58 6.48 86.73 0.56 2.15 16 12 N -0.62 -17.55 3.32 -811.37 -2.70 -20.25 16 13 C 0.54 21.23 7.87 87.66 0.69 21.92 16 14 O -0.57 -27.35 16.12 -3.03 -0.05 -27.40 16 15 C -0.10 -4.08 5.35 71.24 0.38 -3.70 16 16 S -0.18 -9.47 18.55 -56.49 -1.05 -10.52 16 17 C -0.53 -31.45 10.04 67.96 0.68 -30.77 16 18 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 19 C 0.05 2.81 5.50 84.86 0.47 3.28 16 20 N -0.91 -56.17 13.97 21.65 0.30 -55.87 16 21 Si 0.91 46.03 27.74 68.60 1.90 47.93 16 22 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.24 -12.19 6.74 99.48 0.67 -11.52 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.12 2.91 6.33 86.93 0.55 3.46 16 26 C -0.07 -0.84 12.08 66.93 0.81 -0.03 16 27 O -0.21 -3.50 10.78 -3.68 -0.04 -3.54 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.35 4.22 8.72 -89.69 -0.78 3.43 16 34 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.87 7.96 -2.38 -0.02 0.85 16 36 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.09 0.76 8.04 -2.39 -0.02 0.74 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 41 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 42 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.06 1.58 7.91 -2.39 -0.02 1.56 16 44 H 0.05 1.57 8.03 -2.39 -0.02 1.55 16 45 H 0.25 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -85.40 392.04 -1.04 -86.43 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.17 Total: 9.45 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 7.05 Total: 1.68 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -9.03 Total: -104.03 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.09 Total: -30.94 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.05 Total: -10.52 kcal Total: -85.40 -1.04 -86.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714339129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.111 kcal (2) G-P(sol) polarization free energy of solvation -85.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds