Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47094 * 2 1 4 4 C 1.33814 * 124.52152 * 89.97917 * 3 2 1 5 5 C 1.37477 * 115.09811 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29948 * 0.02562 * 5 4 3 7 7 C 1.46585 * 125.45971 * 180.02562 * 6 5 4 8 8 O 1.21702 * 119.99829 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99848 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99807 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47167 * 324.99524 * 10 9 7 12 12 C 1.53005 * 109.47346 * 84.99820 * 10 9 7 13 13 C 1.53001 * 109.47223 * 204.99889 * 10 9 7 14 14 N 1.46898 * 109.47081 * 54.99572 * 13 10 9 15 15 C 1.46902 * 110.99769 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.46926 * 180.02562 * 15 14 13 17 17 O 1.21291 * 119.99871 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99962 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99687 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00690 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99842 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47371 * 59.99939 * 23 21 19 25 25 H 1.48501 * 109.47447 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46995 * 299.99838 * 23 21 19 27 27 S 1.70620 * 124.52019 * 270.02284 * 3 2 1 28 28 H 1.08996 * 109.47322 * 300.00124 * 1 2 3 29 29 H 1.09000 * 109.46909 * 60.00128 * 1 2 3 30 30 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47322 * 239.99876 * 2 1 3 32 32 H 1.09000 * 109.46909 * 119.99872 * 2 1 3 33 33 H 1.08001 * 122.45277 * 0.03913 * 4 3 2 34 34 H 1.08006 * 123.34712 * 180.02562 * 5 4 3 35 35 H 0.96996 * 120.00545 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.46687 * 300.00073 * 12 10 9 37 37 H 1.08997 * 109.46807 * 59.99873 * 12 10 9 38 38 H 1.09000 * 109.46956 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47316 * 175.00114 * 13 10 9 40 40 H 1.09005 * 109.47078 * 294.99849 * 13 10 9 41 41 H 1.00906 * 110.99795 * 56.05477 * 14 13 10 42 42 H 1.09000 * 109.47414 * 300.00188 * 15 14 13 43 43 H 1.08999 * 109.47141 * 60.00521 * 15 14 13 44 44 H 0.96992 * 119.99877 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99687 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2848 2.1359 1.1025 5 6 2.7364 3.4148 0.8774 6 6 2.8451 3.7239 -0.4491 7 6 3.2994 5.0090 -0.9883 8 8 3.6173 5.9080 -0.2321 9 7 3.3642 5.1953 -2.3216 10 6 3.8187 6.4795 -2.8605 11 1 3.4799 7.2866 -2.2108 12 6 5.3470 6.4902 -2.9325 13 6 3.2407 6.6773 -4.2632 14 7 1.7783 6.5478 -4.2130 15 6 1.1874 6.7328 -5.5451 16 6 -0.3105 6.5938 -5.4539 17 8 -0.8341 6.3637 -4.3843 18 7 -1.0681 6.7250 -6.5608 19 6 -2.4306 6.5981 -6.4778 20 1 -2.8969 6.3924 -5.5257 21 6 -3.2117 6.7329 -7.6191 22 7 -2.6443 6.9826 -8.7779 23 14 -5.0682 6.5606 -7.5061 24 1 -5.6055 7.5898 -6.5801 25 1 -5.6656 6.7458 -8.8530 26 1 -5.4097 5.2086 -6.9954 27 16 2.3541 2.3326 -1.4058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1442 1.7376 2.0965 34 1 2.9809 4.1062 1.6703 35 1 3.1105 4.4790 -2.9243 36 1 5.7588 6.3493 -1.9331 37 1 5.6858 5.6832 -3.5821 38 1 5.6852 7.4459 -3.3330 39 1 3.5053 7.6695 -4.6287 40 1 3.6495 5.9220 -4.9345 41 1 1.3806 7.1946 -3.5484 42 1 1.4377 7.7256 -5.9190 43 1 1.5818 5.9781 -6.2255 44 1 -0.6493 6.9086 -7.4162 45 1 -3.1896 7.0771 -9.5745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715990303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = -53.989198 kcal Electronic energy + Delta-G solvation = -26204.238549 eV Core-core repulsion = 22347.740487 eV Total energy + Delta-G solvation = -3856.498062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88412 -38.38802 -38.06457 -36.57641 -34.29499 -33.95378 -33.65440 -31.36194 -31.14096 -28.72424 -27.60630 -25.53045 -24.97411 -23.31904 -22.63149 -22.11300 -20.77512 -19.44353 -19.14247 -18.06182 -17.89112 -16.73658 -16.13930 -15.93858 -15.38920 -15.12202 -14.88637 -14.57845 -14.44188 -14.41988 -14.07338 -13.91472 -13.60525 -13.52108 -13.28901 -12.96787 -12.60688 -12.55703 -12.46767 -12.07125 -11.99103 -11.81452 -11.73174 -11.54263 -11.49012 -11.37418 -11.02743 -10.99573 -10.90891 -10.44973 -10.22182 -10.04020 -9.50798 -9.15130 -8.75548 -8.68600 -8.49129 -8.11489 -7.97051 -6.42662 -3.83440 0.40462 1.34079 1.76827 2.27693 3.09727 3.19509 3.25012 3.25173 3.29694 3.89800 4.04729 4.27763 4.41021 4.71331 4.74589 4.85576 4.98093 5.05707 5.09940 5.11382 5.22324 5.25889 5.28420 5.42962 5.44074 5.54695 5.55500 5.56797 5.64347 5.76470 5.83407 5.91101 5.93923 5.94148 6.02684 6.06444 6.23254 6.24357 6.45157 7.13083 7.49368 7.54231 7.58368 8.05149 8.18308 8.60406 9.17042 9.53282 10.04919 10.75042 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.002772 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.809198 B =10099.343350 C =12442.754440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.055 4.055 3 C -0.195 4.195 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.266 4.266 7 C 0.594 3.406 8 O -0.540 6.540 9 N -0.703 5.703 10 C 0.146 3.854 11 H 0.089 0.911 12 C -0.161 4.161 13 C 0.047 3.953 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 S 0.216 5.784 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.403 0.597 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 -10.329 12.084 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.094 4.094 3 C -0.315 4.315 4 C -0.187 4.187 5 C -0.089 4.089 6 C -0.386 4.386 7 C 0.380 3.620 8 O -0.419 6.419 9 N -0.354 5.354 10 C 0.041 3.959 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.083 4.083 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.484 5.516 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.042 -10.770 11.498 21.782 hybrid contribution -0.695 0.946 0.533 1.289 sum 14.347 -9.824 12.031 21.144 Atomic orbital electron populations 1.21823 0.93872 1.02208 1.02977 1.20152 0.96552 0.89337 1.03360 1.24307 1.07038 1.02156 0.98030 1.19913 1.05082 0.94193 0.99473 1.20699 0.96906 0.96137 0.95166 1.24591 1.16334 0.99607 0.98109 1.16905 0.77149 0.85554 0.82359 1.90801 1.50125 1.42767 1.58193 1.45690 1.67175 1.16515 1.05972 1.20987 0.93810 0.86431 0.94671 0.89298 1.22148 0.94865 1.02319 1.02694 1.22326 0.89431 1.00827 0.95724 1.60076 1.02394 1.59423 1.08149 1.21683 0.94981 1.00294 0.91269 1.19799 0.87687 0.84677 0.85303 1.90537 1.73852 1.53722 1.28434 1.41851 1.07102 1.62417 1.08658 1.19655 0.81342 1.45723 0.96214 0.87993 1.25255 1.00708 0.97243 0.94686 1.69605 1.36754 1.48951 0.99073 0.85922 0.82067 0.79094 0.77176 1.19905 1.20973 1.19871 1.83156 1.59202 1.02036 1.07161 0.92143 0.92010 0.91874 0.90626 0.89931 0.84071 0.83174 0.76224 0.91804 0.92246 0.91428 0.93658 0.90397 0.82899 0.93799 0.89577 0.77483 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 37.16 0.37 -0.79 16 2 C -0.05 -0.41 6.37 -27.88 -0.18 -0.58 16 3 C -0.20 -1.91 5.53 -35.86 -0.20 -2.11 16 4 C -0.16 -1.55 10.00 -41.41 -0.41 -1.96 16 5 C -0.06 -0.66 10.01 -40.44 -0.40 -1.06 16 6 C -0.27 -3.44 6.45 -36.79 -0.24 -3.67 16 7 C 0.59 8.64 7.75 -12.90 -0.10 8.54 16 8 O -0.54 -9.31 16.50 5.19 0.09 -9.22 16 9 N -0.70 -8.87 4.80 -55.14 -0.26 -9.14 16 10 C 0.15 1.68 2.82 -67.93 -0.19 1.49 16 11 H 0.09 1.18 7.57 -51.93 -0.39 0.78 16 12 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 13 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 14 N -0.67 -10.32 5.85 -115.05 -0.67 -10.99 16 15 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 16 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 17 O -0.58 -15.72 15.78 5.55 0.09 -15.64 16 18 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 S 0.22 2.33 22.10 -107.50 -2.38 -0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.40 4.78 7.72 -40.82 -0.31 4.46 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -33.03 397.85 -9.67 -42.70 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -6.79 Total: 16.05 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.38 Total: 2.20 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.27 Total: -58.05 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.17 Total: -24.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.38 Total: -0.05 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.03 -9.67 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715990303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.286 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds