Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32568 * 121.64412 * 2 1 4 4 S 1.77236 * 105.31686 * 180.19591 * 3 2 1 5 5 C 1.72211 * 94.84697 * 359.76558 * 4 3 2 6 6 O 1.21825 * 127.05754 * 180.02562 * 5 4 3 7 7 N 1.34242 * 105.88521 * 359.97438 * 5 4 3 8 8 C 1.46500 * 121.37987 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47202 * 90.02707 * 8 7 5 10 10 C 1.50701 * 109.46904 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00260 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00078 * 180.02562 * 10 9 8 13 13 C 1.47430 * 125.64709 * 354.91191 * 12 10 9 14 14 C 1.54903 * 104.83272 * 204.17006 * 13 12 10 15 15 C 1.55154 * 101.58441 * 322.99187 * 14 13 12 16 16 C 1.47023 * 125.65049 * 174.96532 * 12 10 9 17 17 H 1.08995 * 109.88481 * 59.47728 * 16 12 10 18 18 C 1.53001 * 109.87955 * 298.31447 * 16 12 10 19 19 N 1.46500 * 109.47138 * 177.26873 * 18 16 12 20 20 C 1.36940 * 120.00108 * 184.91772 * 19 18 16 21 21 H 1.08000 * 119.99546 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00061 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99718 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99868 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47499 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46796 * 120.00699 * 24 22 20 27 27 H 1.48499 * 109.47159 * 240.00295 * 24 22 20 28 28 H 1.08994 * 109.47047 * 270.24062 * 1 2 3 29 29 H 1.09000 * 109.46993 * 30.23655 * 1 2 3 30 30 H 1.08995 * 109.47206 * 150.23869 * 1 2 3 31 31 H 1.07999 * 127.34181 * 359.94240 * 3 2 1 32 32 H 1.08994 * 109.46826 * 330.02194 * 8 7 5 33 33 H 1.09004 * 109.46821 * 210.02822 * 8 7 5 34 34 H 1.08994 * 109.47649 * 59.99991 * 9 8 7 35 35 H 1.09009 * 109.47161 * 299.99354 * 9 8 7 36 36 H 1.08999 * 110.36520 * 85.33371 * 13 12 10 37 37 H 1.08998 * 110.36755 * 323.01273 * 13 12 10 38 38 H 1.09001 * 111.00307 * 204.91756 * 14 13 12 39 39 H 1.08997 * 111.00957 * 81.06785 * 14 13 12 40 40 H 1.09003 * 110.72459 * 153.86661 * 15 14 13 41 41 H 1.08999 * 110.72067 * 277.13818 * 15 14 13 42 42 H 1.09000 * 109.46909 * 297.26523 * 18 16 12 43 43 H 1.08995 * 109.47071 * 57.26758 * 18 16 12 44 44 H 0.97002 * 120.00083 * 4.91191 * 19 18 16 45 45 H 0.97007 * 119.99865 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0009 6 8 4.3673 -1.9703 -0.0017 7 7 2.2222 -1.1604 0.0054 8 6 1.5577 -2.4660 0.0105 9 6 1.3323 -2.9179 1.4547 10 6 0.6493 -4.2613 1.4598 11 8 0.3699 -4.8036 0.4116 12 7 0.3481 -4.8596 2.6293 13 6 0.7212 -4.3668 3.9678 14 6 0.7207 -5.6269 4.8687 15 6 -0.4802 -6.4220 4.2917 16 6 -0.4062 -6.1124 2.7816 17 1 0.1088 -6.9206 2.2623 18 6 -1.8174 -5.9422 2.2155 19 7 -2.5390 -7.2135 2.3124 20 6 -3.7926 -7.3320 1.7741 21 1 -4.2491 -6.4883 1.2779 22 6 -4.4761 -8.5367 1.8654 23 7 -3.9195 -9.5649 2.4698 24 14 -6.1864 -8.6980 1.1318 25 1 -6.5834 -7.4078 0.5131 26 1 -6.1824 -9.7626 0.0965 27 1 -7.1528 -9.0522 2.2023 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.8152 2.1367 -0.0009 32 1 2.1839 -3.1944 -0.5047 33 1 0.5976 -2.3870 -0.4996 34 1 0.7061 -2.1896 1.9698 35 1 2.2925 -2.9970 1.9647 36 1 -0.0135 -3.6451 4.3247 37 1 1.7142 -3.9181 3.9436 38 1 0.5486 -5.3614 5.9117 39 1 1.6493 -6.1868 4.7579 40 1 -0.3585 -7.4899 4.4729 41 1 -1.4189 -6.0627 4.7135 42 1 -2.3477 -5.1791 2.7852 43 1 -1.7555 -5.6383 1.1707 44 1 -2.1288 -7.9713 2.7577 45 1 -4.3973 -10.4067 2.5339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716778865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -21.954311 kcal Electronic energy + Delta-G solvation = -27238.043836 eV Core-core repulsion = 23382.934911 eV Total energy + Delta-G solvation = -3855.108925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40531 -40.08202 -37.90961 -37.54036 -34.56252 -33.69077 -32.01251 -31.36121 -31.25718 -28.95974 -28.27044 -25.48247 -25.03025 -23.72609 -22.81242 -22.08611 -20.85284 -20.38459 -18.95587 -18.39524 -17.76498 -17.05002 -16.69348 -16.62435 -16.25568 -15.60089 -15.13933 -14.75386 -14.57515 -14.47982 -14.07077 -14.01551 -13.79681 -13.59465 -13.34769 -13.17765 -13.01484 -12.75847 -12.73042 -12.54020 -12.21420 -11.78930 -11.63413 -11.52519 -11.44849 -11.19604 -10.93584 -10.86109 -10.59165 -10.43100 -10.36579 -10.03096 -10.02780 -9.80842 -9.64788 -8.86774 -8.52845 -8.29420 -6.91761 -5.76125 -3.04570 0.63240 1.02829 1.45529 1.82140 2.36501 2.62568 3.00865 3.43883 3.49629 3.51859 4.07911 4.37081 4.41002 4.48028 4.55013 4.62543 4.68523 4.89968 4.91255 4.95675 5.02353 5.09284 5.14342 5.23083 5.33286 5.33688 5.40767 5.53509 5.58662 5.61154 5.76503 5.77962 5.89123 5.99892 6.02845 6.14376 6.37943 6.40455 6.49018 6.78446 6.91123 6.99694 7.57500 7.71667 8.17757 8.42760 9.53848 10.09994 10.45491 11.46978 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002429 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.884512 B =11523.813891 C =12477.611117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.106 3.894 3 C -0.242 4.242 4 S -0.005 6.005 5 C 0.479 3.521 6 O -0.470 6.470 7 N -0.532 5.532 8 C 0.114 3.886 9 C -0.151 4.151 10 C 0.531 3.469 11 O -0.529 6.529 12 N -0.610 5.610 13 C 0.099 3.901 14 C -0.134 4.134 15 C -0.121 4.121 16 C 0.129 3.871 17 H 0.078 0.922 18 C 0.149 3.851 19 N -0.728 5.728 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.192 0.808 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.014 0.986 43 H 0.035 0.965 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 23.621 1.771 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.005 4.005 3 C -0.380 4.380 4 S 0.238 5.762 5 C 0.161 3.839 6 O -0.349 6.349 7 N -0.253 5.253 8 C -0.011 4.011 9 C -0.192 4.192 10 C 0.319 3.681 11 O -0.405 6.405 12 N -0.345 5.345 13 C -0.024 4.024 14 C -0.172 4.172 15 C -0.160 4.160 16 C 0.027 3.973 17 H 0.096 0.904 18 C 0.020 3.980 19 N -0.373 5.373 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.209 0.791 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.054 23.479 1.020 27.909 hybrid contribution -1.989 -1.074 -0.109 2.263 sum 13.065 22.406 0.911 25.952 Atomic orbital electron populations 1.20860 0.86412 1.04912 1.04304 1.19522 0.95998 0.84852 1.00081 1.24888 0.93030 1.01310 1.18757 1.85171 1.08687 1.01333 1.81036 1.21628 0.83803 0.95692 0.82731 1.90991 1.48605 1.42372 1.52918 1.46164 1.06381 1.07928 1.64819 1.21676 1.00235 0.82196 0.96947 1.21931 1.02802 0.95936 0.98487 1.19816 0.79263 0.86282 0.82782 1.90782 1.53671 1.65525 1.30503 1.48522 1.54939 1.25543 1.05478 1.22345 1.00047 0.97369 0.82663 1.22797 0.99581 0.95831 0.99028 1.22680 0.98484 1.01407 0.93381 1.21858 0.93534 0.85365 0.96581 0.90437 1.20910 0.88540 0.90268 0.98261 1.42215 1.16970 1.09005 1.69095 1.19247 0.91892 0.96595 1.28850 0.91222 1.24731 0.98839 0.95988 1.01497 1.69668 1.37923 1.02252 1.48447 0.86101 0.84230 0.77438 0.78346 1.20579 1.21842 1.21879 0.89398 0.89001 0.89984 0.79130 0.87653 0.87555 0.88352 0.88499 0.91215 0.90985 0.89883 0.90746 0.89681 0.89821 0.96797 0.94718 0.78285 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.69 36.01 0.35 -0.14 16 2 C 0.11 0.74 6.59 -82.51 -0.54 0.20 16 3 C -0.24 -1.49 11.25 28.83 0.32 -1.17 16 4 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16 5 C 0.48 5.60 8.27 53.82 0.45 6.05 16 6 O -0.47 -7.08 17.55 5.08 0.09 -6.99 16 7 N -0.53 -5.08 2.60 -117.28 -0.31 -5.38 16 8 C 0.11 1.18 4.56 -4.05 -0.02 1.16 16 9 C -0.15 -1.51 5.11 -27.89 -0.14 -1.65 16 10 C 0.53 7.64 7.58 -10.98 -0.08 7.56 16 11 O -0.53 -9.83 15.17 5.55 0.08 -9.75 16 12 N -0.61 -8.50 3.06 -163.01 -0.50 -9.00 16 13 C 0.10 0.98 6.65 -2.53 -0.02 0.97 16 14 C -0.13 -1.36 7.08 -24.59 -0.17 -1.53 16 15 C -0.12 -1.72 5.98 -24.90 -0.15 -1.86 16 16 C 0.13 2.20 2.95 -66.95 -0.20 2.00 16 17 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 18 C 0.15 3.15 5.63 -4.04 -0.02 3.13 16 19 N -0.73 -18.77 5.44 -59.91 -0.33 -19.10 16 20 C -0.23 -6.70 9.99 -15.06 -0.15 -6.85 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 24 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.26 8.10 -51.93 -0.42 -0.17 16 30 H 0.08 0.44 6.18 -51.93 -0.32 0.12 16 31 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.11 1.31 7.76 -51.93 -0.40 0.90 16 33 H 0.11 1.01 6.07 -51.93 -0.32 0.69 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.94 7.77 -51.92 -0.40 0.54 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.57 7.51 -51.93 -0.39 0.19 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.26 7.80 -51.93 -0.41 0.86 16 42 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 43 H 0.03 0.82 6.94 -51.93 -0.36 0.46 16 44 H 0.38 10.20 7.37 -40.82 -0.30 9.90 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -35.63 382.35 -9.11 -44.74 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.67 Total: 4.90 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.48 Total: 7.33 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.41 Total: -61.14 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.17 Total: -16.74 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.63 -9.11 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716778865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.782 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds