Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29030 * 124.92374 * 2 1 4 4 C 1.31781 * 117.12819 * 180.22786 * 3 2 1 5 5 C 1.50702 * 122.74861 * 179.74917 * 4 3 2 6 6 C 1.50703 * 109.47050 * 304.71065 * 5 4 3 7 7 O 1.21278 * 119.99928 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99881 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98210 * 359.97438 * 8 6 5 10 10 C 1.53295 * 108.37983 * 129.49252 * 9 8 6 11 11 O 1.42965 * 109.22501 * 52.30423 * 10 9 8 12 12 C 1.42962 * 114.16745 * 297.42079 * 11 10 9 13 13 H 1.09001 * 109.50587 * 302.65437 * 12 11 10 14 14 C 1.52998 * 109.51459 * 182.50410 * 12 11 10 15 15 H 1.08998 * 109.47166 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47141 * 59.99373 * 14 12 11 17 17 N 1.46499 * 109.47072 * 299.99825 * 14 12 11 18 18 C 1.36935 * 120.00276 * 205.00307 * 17 14 12 19 19 H 1.08002 * 119.99664 * 359.97438 * 18 17 14 20 20 C 1.38812 * 120.00086 * 180.02562 * 18 17 14 21 21 N 1.31614 * 120.00006 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99716 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47215 * 60.00299 * 22 20 18 24 24 H 1.48507 * 109.47158 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47543 * 299.99817 * 22 20 18 26 26 C 1.47157 * 120.98280 * 180.02562 * 8 6 5 27 27 C 1.33638 * 114.49843 * 359.48097 * 4 3 2 28 28 S 1.70987 * 124.91575 * 179.68965 * 2 1 3 29 29 H 1.08998 * 109.47324 * 180.28522 * 1 2 3 30 30 H 1.09001 * 109.46883 * 300.28688 * 1 2 3 31 31 H 1.08997 * 109.46613 * 60.28552 * 1 2 3 32 32 H 1.08993 * 109.47224 * 184.70660 * 5 4 3 33 33 H 1.09005 * 109.47148 * 64.70465 * 5 4 3 34 34 H 1.08993 * 109.68045 * 9.77619 * 9 8 6 35 35 H 1.08996 * 109.68155 * 249.21393 * 9 8 6 36 36 H 1.09000 * 109.51562 * 292.38058 * 10 9 8 37 37 H 1.08997 * 109.51092 * 172.22516 * 10 9 8 38 38 H 1.08994 * 109.47054 * 180.02562 * 16 14 12 39 39 H 1.08998 * 109.47341 * 300.00200 * 16 14 12 40 40 H 1.09004 * 109.46860 * 60.00450 * 16 14 12 41 41 H 0.97007 * 119.99882 * 25.00040 * 17 14 12 42 42 H 0.97004 * 119.99954 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.67701 * 350.23134 * 26 8 6 44 44 H 1.08996 * 109.68091 * 110.74483 * 26 8 6 45 45 H 1.08002 * 126.03374 * 180.27783 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0579 0.0000 4 6 3.5513 0.8792 -0.0047 5 6 4.5309 2.0244 -0.0108 6 6 4.2381 2.9296 -1.1795 7 8 3.3243 2.6701 -1.9335 8 7 4.9924 4.0270 -1.3874 9 6 6.1067 4.3621 -0.4866 10 6 7.3547 4.6227 -1.3377 11 8 7.0432 5.5855 -2.3476 12 6 6.0409 5.1591 -3.2735 13 1 6.3570 4.2313 -3.7504 14 6 5.8364 6.2385 -4.3384 15 1 5.0724 5.9125 -5.0442 16 6 7.1514 6.4750 -5.0839 17 7 5.4087 7.4836 -3.6957 18 6 4.6883 8.4076 -4.4045 19 1 4.4359 8.2187 -5.4375 20 6 4.2836 9.5876 -3.7957 21 7 4.5917 9.8181 -2.5371 22 14 3.3016 10.8484 -4.7629 23 1 2.0339 10.2340 -5.2328 24 1 2.9943 12.0110 -3.8915 25 1 4.0951 11.3024 -5.9331 26 6 4.7253 4.9261 -2.5214 27 6 3.9354 -0.4008 0.0022 28 16 2.4857 -1.4021 0.0076 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3632 0.5094 -0.8925 32 1 5.5450 1.6346 -0.0982 33 1 4.4370 2.5879 0.9176 34 1 6.2927 3.5300 0.1924 35 1 5.8596 5.2559 0.0861 36 1 7.6756 3.6931 -1.8076 37 1 8.1542 5.0059 -0.7036 38 1 7.0058 7.2443 -5.8422 39 1 7.9156 6.8008 -4.3784 40 1 7.4696 5.5486 -5.5621 41 1 5.6358 7.6534 -2.7680 42 1 4.3085 10.6425 -2.1115 43 1 3.9965 4.4675 -3.1896 44 1 4.3388 5.8764 -2.1532 45 1 4.9546 -0.7583 0.0042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717618129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -13.711980 kcal Electronic energy + Delta-G solvation = -27517.249197 eV Core-core repulsion = 23662.497686 eV Total energy + Delta-G solvation = -3854.751511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59311 -39.68827 -38.11578 -35.45064 -34.42272 -33.33728 -32.26349 -30.52667 -29.78403 -28.36109 -28.25357 -27.11596 -24.22507 -23.45559 -23.25753 -22.12628 -19.96229 -19.69514 -19.21978 -17.77663 -17.32132 -17.12388 -16.25955 -15.91147 -15.39449 -15.23646 -15.12739 -14.67805 -14.66160 -14.24638 -13.94455 -13.65444 -13.52810 -13.33590 -13.21305 -12.96856 -12.73814 -12.43616 -12.33443 -12.21046 -11.89734 -11.77752 -11.57956 -11.32693 -11.13839 -10.79521 -10.75112 -10.44567 -10.27146 -10.00148 -9.84822 -9.74691 -9.63407 -9.53284 -9.51704 -8.89288 -8.87290 -8.29832 -6.88717 -5.70059 -2.98308 0.52176 1.16833 1.50499 2.55723 2.73767 3.09790 3.48538 3.52963 3.53603 3.82645 4.00990 4.49128 4.61530 4.64474 4.81923 4.86204 4.98070 4.99362 5.06926 5.14372 5.16001 5.25085 5.35030 5.42709 5.48689 5.52492 5.62245 5.65068 5.72969 5.83522 5.89743 5.95212 6.06156 6.25125 6.42130 6.45356 6.62951 6.70315 6.81552 7.16474 7.47571 7.51100 7.64460 7.75453 8.28712 8.48324 9.60486 10.17638 10.55014 11.52194 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.002647 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.197497 B =10575.318832 C =11645.877306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.056 3.944 3 N -0.447 5.447 4 C 0.094 3.906 5 C -0.067 4.067 6 C 0.518 3.482 7 O -0.523 6.523 8 N -0.615 5.615 9 C 0.070 3.930 10 C 0.048 3.952 11 O -0.358 6.358 12 C 0.079 3.921 13 H 0.053 0.947 14 C 0.182 3.818 15 H 0.059 0.941 16 C -0.160 4.160 17 N -0.717 5.717 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.088 3.912 27 C -0.261 4.261 28 S 0.104 5.896 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.390 0.610 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -24.083 9.054 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.223 4.223 3 N -0.161 5.161 4 C -0.039 4.039 5 C -0.109 4.109 6 C 0.305 3.695 7 O -0.398 6.398 8 N -0.350 5.350 9 C -0.053 4.053 10 C -0.030 4.030 11 O -0.276 6.276 12 C 0.020 3.980 13 H 0.071 0.929 14 C 0.072 3.928 15 H 0.077 0.923 16 C -0.220 4.220 17 N -0.359 5.359 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.034 4.034 27 C -0.400 4.400 28 S 0.358 5.642 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.225 0.775 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.494 -24.513 8.535 25.961 hybrid contribution 0.266 1.290 -0.116 1.323 sum 0.760 -23.223 8.419 24.713 Atomic orbital electron populations 1.20435 0.85170 1.03286 1.04762 1.27070 1.01829 0.90448 1.02990 1.65970 1.04266 1.31219 1.14649 1.19568 0.90025 0.93001 1.01277 1.20276 0.97682 0.93536 0.99420 1.20195 0.82097 0.80977 0.86220 1.90726 1.29602 1.72352 1.47089 1.48207 1.32262 1.25134 1.29385 1.22489 0.87487 1.02224 0.93097 1.22881 0.95837 0.93416 0.90883 1.88110 1.57759 1.40804 1.40960 1.22920 0.86925 0.97921 0.90280 0.92864 1.20253 0.94730 0.86632 0.91227 0.92308 1.22352 0.99681 0.99513 1.00492 1.42369 1.64220 1.16194 1.13121 1.19196 1.25790 0.97034 0.94978 0.91305 1.24710 1.01591 0.98314 0.96186 1.69661 1.51049 1.26343 1.10834 0.86304 0.80048 0.81223 0.78819 1.21317 1.21797 1.21371 1.22407 0.98253 0.94617 0.88120 1.26699 1.03161 0.95615 1.14566 1.83856 0.97969 1.13337 1.69032 0.90379 0.89365 0.89140 0.87429 0.87145 0.89506 0.89908 0.93377 0.87953 0.92773 0.92555 0.94912 0.77514 0.93573 0.88741 0.88533 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.47 36.01 0.38 -0.24 16 2 C 0.06 0.63 7.39 -13.46 -0.10 0.53 16 3 N -0.45 -6.40 9.70 -8.05 -0.08 -6.48 16 4 C 0.09 1.17 5.63 -84.22 -0.47 0.69 16 5 C -0.07 -0.72 4.57 -29.03 -0.13 -0.85 16 6 C 0.52 7.95 7.68 -10.99 -0.08 7.87 16 7 O -0.52 -10.25 14.93 5.56 0.08 -10.17 16 8 N -0.61 -9.17 3.02 -172.27 -0.52 -9.69 16 9 C 0.07 0.80 6.54 -3.53 -0.02 0.78 16 10 C 0.05 0.57 6.98 37.31 0.26 0.83 16 11 O -0.36 -6.07 9.22 -35.23 -0.32 -6.40 16 12 C 0.08 1.37 2.53 -26.57 -0.07 1.30 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.18 3.69 2.74 -67.93 -0.19 3.50 16 15 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 16 C -0.16 -3.01 9.35 37.16 0.35 -2.66 16 17 N -0.72 -17.93 4.29 -53.43 -0.23 -18.15 16 18 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 22 Si 0.90 22.70 29.55 -169.99 -5.02 17.67 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.09 1.59 5.86 -3.52 -0.02 1.57 16 27 C -0.26 -2.55 11.07 29.12 0.32 -2.23 16 28 S 0.10 0.93 23.17 -107.50 -2.49 -1.56 16 29 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.78 7.54 -51.93 -0.39 0.39 16 33 H 0.11 1.02 8.02 -51.93 -0.42 0.61 16 34 H 0.09 0.64 6.05 -51.93 -0.31 0.33 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.39 10.51 7.20 -40.82 -0.29 10.22 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.09 1.82 7.08 -51.93 -0.37 1.46 16 44 H 0.10 2.06 7.26 -51.93 -0.38 1.68 16 45 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -35.66 380.86 -8.90 -44.56 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.75 Total: 8.14 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.03 Total: 3.86 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.10 Total: -61.85 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.24 Total: -16.57 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.66 -8.90 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.847 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds