Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29030 * 124.92374 * 2 1 4 4 C 1.31781 * 117.12819 * 180.22786 * 3 2 1 5 5 C 1.50702 * 122.74861 * 179.74917 * 4 3 2 6 6 C 1.50703 * 109.47050 * 304.71065 * 5 4 3 7 7 O 1.21278 * 119.99928 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99881 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98210 * 359.97438 * 8 6 5 10 10 C 1.53295 * 108.37983 * 129.49252 * 9 8 6 11 11 O 1.42965 * 109.22501 * 52.30423 * 10 9 8 12 12 C 1.42962 * 114.16745 * 297.42079 * 11 10 9 13 13 H 1.09001 * 109.50587 * 302.65437 * 12 11 10 14 14 C 1.52998 * 109.51459 * 182.50410 * 12 11 10 15 15 H 1.08998 * 109.47166 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47141 * 59.99373 * 14 12 11 17 17 N 1.46499 * 109.47072 * 299.99825 * 14 12 11 18 18 C 1.36935 * 120.00276 * 205.00307 * 17 14 12 19 19 H 1.08002 * 119.99664 * 359.97438 * 18 17 14 20 20 C 1.38812 * 120.00086 * 180.02562 * 18 17 14 21 21 N 1.31614 * 120.00006 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99716 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47215 * 60.00299 * 22 20 18 24 24 H 1.48507 * 109.47158 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47543 * 299.99817 * 22 20 18 26 26 C 1.47157 * 120.98280 * 180.02562 * 8 6 5 27 27 C 1.33638 * 114.49843 * 359.48097 * 4 3 2 28 28 S 1.70987 * 124.91575 * 179.68965 * 2 1 3 29 29 H 1.08998 * 109.47324 * 180.28522 * 1 2 3 30 30 H 1.09001 * 109.46883 * 300.28688 * 1 2 3 31 31 H 1.08997 * 109.46613 * 60.28552 * 1 2 3 32 32 H 1.08993 * 109.47224 * 184.70660 * 5 4 3 33 33 H 1.09005 * 109.47148 * 64.70465 * 5 4 3 34 34 H 1.08993 * 109.68045 * 9.77619 * 9 8 6 35 35 H 1.08996 * 109.68155 * 249.21393 * 9 8 6 36 36 H 1.09000 * 109.51562 * 292.38058 * 10 9 8 37 37 H 1.08997 * 109.51092 * 172.22516 * 10 9 8 38 38 H 1.08994 * 109.47054 * 180.02562 * 16 14 12 39 39 H 1.08998 * 109.47341 * 300.00200 * 16 14 12 40 40 H 1.09004 * 109.46860 * 60.00450 * 16 14 12 41 41 H 0.97007 * 119.99882 * 25.00040 * 17 14 12 42 42 H 0.97004 * 119.99954 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.67701 * 350.23134 * 26 8 6 44 44 H 1.08996 * 109.68091 * 110.74483 * 26 8 6 45 45 H 1.08002 * 126.03374 * 180.27783 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0579 0.0000 4 6 3.5513 0.8792 -0.0047 5 6 4.5309 2.0244 -0.0108 6 6 4.2381 2.9296 -1.1795 7 8 3.3243 2.6701 -1.9335 8 7 4.9924 4.0270 -1.3874 9 6 6.1067 4.3621 -0.4866 10 6 7.3547 4.6227 -1.3377 11 8 7.0432 5.5855 -2.3476 12 6 6.0409 5.1591 -3.2735 13 1 6.3570 4.2313 -3.7504 14 6 5.8364 6.2385 -4.3384 15 1 5.0724 5.9125 -5.0442 16 6 7.1514 6.4750 -5.0839 17 7 5.4087 7.4836 -3.6957 18 6 4.6883 8.4076 -4.4045 19 1 4.4359 8.2187 -5.4375 20 6 4.2836 9.5876 -3.7957 21 7 4.5917 9.8181 -2.5371 22 14 3.3016 10.8484 -4.7629 23 1 2.0339 10.2340 -5.2328 24 1 2.9943 12.0110 -3.8915 25 1 4.0951 11.3024 -5.9331 26 6 4.7253 4.9261 -2.5214 27 6 3.9354 -0.4008 0.0022 28 16 2.4857 -1.4021 0.0076 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3632 0.5094 -0.8925 32 1 5.5450 1.6346 -0.0982 33 1 4.4370 2.5879 0.9176 34 1 6.2927 3.5300 0.1924 35 1 5.8596 5.2559 0.0861 36 1 7.6756 3.6931 -1.8076 37 1 8.1542 5.0059 -0.7036 38 1 7.0058 7.2443 -5.8422 39 1 7.9156 6.8008 -4.3784 40 1 7.4696 5.5486 -5.5621 41 1 5.6358 7.6534 -2.7680 42 1 4.3085 10.6425 -2.1115 43 1 3.9965 4.4675 -3.1896 44 1 4.3388 5.8764 -2.1532 45 1 4.9546 -0.7583 0.0042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717618129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -39.341032 kcal Electronic energy + Delta-G solvation = -27518.360556 eV Core-core repulsion = 23662.497686 eV Total energy + Delta-G solvation = -3855.862870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63688 -40.68811 -39.35880 -37.08095 -35.72525 -34.26226 -34.01912 -31.84616 -30.79330 -30.10223 -29.11743 -28.22809 -25.91200 -25.01089 -24.15872 -23.27446 -21.28061 -20.76449 -20.26876 -19.34080 -18.62363 -18.25524 -17.55832 -17.06288 -16.62605 -16.43303 -16.07533 -16.03381 -15.91337 -15.62859 -15.11039 -14.92600 -14.69927 -14.52818 -14.44684 -14.02183 -13.99820 -13.54697 -13.48858 -13.13302 -13.06954 -13.03113 -12.88203 -12.73782 -12.50369 -12.48654 -12.32813 -12.22977 -11.78416 -11.68488 -11.49635 -11.07648 -10.93976 -10.82648 -10.51437 -10.29635 -9.63368 -9.56464 -8.95033 -7.90148 -5.17256 -0.22510 0.47078 0.75998 1.46566 1.49509 1.55019 1.59938 1.64987 2.05507 2.57460 2.82979 3.12527 3.43353 3.55564 3.72395 3.86033 3.94896 3.99561 4.08689 4.11504 4.21740 4.30477 4.34357 4.38116 4.44592 4.48631 4.53986 4.62376 4.63706 4.76006 4.81055 4.84553 4.88698 4.98772 5.04214 5.09454 5.20225 5.22382 5.35719 5.52698 5.60695 6.28123 6.34116 6.37044 6.89252 7.13722 7.38535 8.14905 8.40462 9.32950 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.002647 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.197497 B =10575.318832 C =11645.877306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.027 3.973 3 N -0.498 5.498 4 C 0.058 3.942 5 C -0.057 4.057 6 C 0.512 3.488 7 O -0.575 6.575 8 N -0.615 5.615 9 C 0.068 3.932 10 C 0.041 3.959 11 O -0.385 6.385 12 C 0.097 3.903 13 H 0.077 0.923 14 C 0.172 3.828 15 H 0.054 0.946 16 C -0.147 4.147 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.278 1.278 26 C 0.097 3.903 27 C -0.254 4.254 28 S 0.152 5.848 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.129 0.871 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.378 0.622 42 H 0.249 0.751 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -26.835 9.573 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.251 4.251 3 N -0.213 5.213 4 C -0.074 4.074 5 C -0.099 4.099 6 C 0.301 3.699 7 O -0.454 6.454 8 N -0.349 5.349 9 C -0.054 4.054 10 C -0.036 4.036 11 O -0.304 6.304 12 C 0.037 3.963 13 H 0.094 0.906 14 C 0.063 3.937 15 H 0.072 0.928 16 C -0.207 4.207 17 N -0.367 5.367 18 C -0.369 4.369 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.798 3.202 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.204 1.204 26 C -0.026 4.026 27 C -0.393 4.393 28 S 0.407 5.593 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.170 0.830 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.147 0.853 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.210 0.790 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.288 -27.308 9.045 28.858 hybrid contribution -0.260 1.986 -0.260 2.020 sum 2.028 -25.321 8.786 26.879 Atomic orbital electron populations 1.20537 0.83892 1.04957 1.04295 1.27520 1.03132 0.91277 1.03137 1.65981 1.05765 1.33315 1.16244 1.19858 0.89827 0.94423 1.03270 1.20374 0.99670 0.92492 0.97320 1.21121 0.80933 0.81032 0.86781 1.90698 1.31782 1.73652 1.49235 1.48297 1.33216 1.24476 1.28875 1.22763 0.85902 1.03753 0.92959 1.23254 0.96549 0.93618 0.90171 1.88063 1.57149 1.43138 1.42064 1.22559 0.86731 0.97206 0.89782 0.90560 1.20503 0.95266 0.85685 0.92288 0.92776 1.22162 0.98199 1.00707 0.99637 1.42469 1.64211 1.17387 1.12593 1.19582 1.24776 0.97328 0.95203 0.90855 1.25479 1.03539 1.00513 0.97211 1.69821 1.52933 1.26637 1.12390 0.85292 0.78778 0.78630 0.77548 1.20817 1.22307 1.20407 1.21965 0.98348 0.93166 0.89139 1.27155 1.05038 0.94930 1.12189 1.83615 0.96770 1.11354 1.67566 0.87641 0.89041 0.90370 0.82961 0.85638 0.84461 0.91311 0.91037 0.85324 0.94388 0.93430 0.91375 0.78964 0.94252 0.90905 0.92861 0.77273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.47 71.24 0.75 -0.48 16 2 C 0.03 0.60 7.39 88.52 0.65 1.26 16 3 N -0.50 -14.22 9.70 -179.39 -1.74 -15.96 16 4 C 0.06 1.35 5.63 41.52 0.23 1.58 16 5 C -0.06 -1.07 4.57 29.10 0.13 -0.94 16 6 C 0.51 15.37 7.68 87.66 0.67 16.05 16 7 O -0.57 -23.23 14.93 -3.02 -0.05 -23.28 16 8 N -0.61 -17.95 3.02 -817.32 -2.47 -20.42 16 9 C 0.07 1.38 6.54 86.35 0.56 1.94 16 10 C 0.04 0.84 6.98 72.08 0.50 1.35 16 11 O -0.39 -12.62 9.22 -148.98 -1.37 -13.99 16 12 C 0.10 3.31 2.53 30.70 0.08 3.38 16 13 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 14 C 0.17 7.00 2.74 44.99 0.12 7.13 16 15 H 0.05 2.24 8.08 -2.39 -0.02 2.22 16 16 C -0.15 -5.39 9.35 71.98 0.67 -4.72 16 17 N -0.73 -37.44 4.29 -322.94 -1.38 -38.83 16 18 C -0.24 -13.47 9.93 84.03 0.83 -12.63 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 21 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 22 Si 0.97 47.68 29.55 68.60 2.03 49.71 16 23 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 26 C 0.10 3.66 5.86 86.36 0.51 4.16 16 27 C -0.25 -4.18 11.07 66.78 0.74 -3.44 16 28 S 0.15 2.40 23.17 -56.49 -1.31 1.09 16 29 H 0.10 1.00 8.12 -2.39 -0.02 0.98 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.15 1.40 7.54 -2.39 -0.02 1.38 16 33 H 0.13 1.96 8.02 -2.38 -0.02 1.94 16 34 H 0.14 1.37 6.05 -2.39 -0.01 1.36 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.81 7.68 -2.39 -0.02 1.80 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.38 21.21 7.20 -92.70 -0.67 20.54 16 42 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 43 H 0.07 2.99 7.08 -2.39 -0.02 2.98 16 44 H 0.05 2.44 7.26 -2.39 -0.02 2.43 16 45 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -82.93 380.86 1.26 -81.67 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.34 Total: 29.69 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.93 Total: 10.66 kcal Atomic # 7 Polarization: -130.25 SS G_CDS: -5.31 Total: -135.56 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.42 Total: -37.27 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.31 Total: 1.09 kcal Total: -82.93 1.26 -81.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.331 kcal (2) G-P(sol) polarization free energy of solvation -82.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds