Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91641 * 2 1 4 4 C 1.31791 * 117.12054 * 179.81644 * 3 2 1 5 5 C 1.50700 * 122.74601 * 180.22754 * 4 3 2 6 6 C 1.50701 * 109.47099 * 305.26113 * 5 4 3 7 7 O 1.21283 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00098 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98176 * 359.97438 * 8 6 5 10 10 C 1.53295 * 108.38590 * 230.51208 * 9 8 6 11 11 O 1.42970 * 109.22221 * 307.70096 * 10 9 8 12 12 C 1.42962 * 114.16708 * 62.57624 * 11 10 9 13 13 H 1.09008 * 109.50991 * 57.34752 * 12 11 10 14 14 C 1.53001 * 109.51018 * 177.44090 * 12 11 10 15 15 H 1.09001 * 109.46771 * 174.99972 * 14 12 11 16 16 C 1.53000 * 109.46774 * 55.00332 * 14 12 11 17 17 N 1.46493 * 109.47522 * 295.00635 * 14 12 11 18 18 C 1.36939 * 119.99816 * 205.00265 * 17 14 12 19 19 H 1.08002 * 120.00138 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99968 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00498 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99877 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47122 * 90.00340 * 22 20 18 24 24 H 1.48500 * 109.47119 * 210.00353 * 22 20 18 25 25 H 1.48494 * 109.47435 * 330.00367 * 22 20 18 26 26 C 1.47154 * 120.98424 * 179.72008 * 8 6 5 27 27 C 1.33641 * 114.50066 * 0.46688 * 4 3 2 28 28 S 1.70982 * 124.91206 * 180.30300 * 2 1 3 29 29 H 1.08995 * 109.47411 * 179.72158 * 1 2 3 30 30 H 1.08998 * 109.46596 * 299.72097 * 1 2 3 31 31 H 1.09004 * 109.46950 * 59.71917 * 1 2 3 32 32 H 1.09000 * 109.47715 * 65.26528 * 5 4 3 33 33 H 1.09002 * 109.46743 * 185.26757 * 5 4 3 34 34 H 1.08999 * 109.68216 * 350.23902 * 9 8 6 35 35 H 1.09005 * 109.67875 * 110.75229 * 9 8 6 36 36 H 1.08998 * 109.51276 * 67.61835 * 10 9 8 37 37 H 1.08993 * 109.51202 * 187.72581 * 10 9 8 38 38 H 1.09006 * 109.47138 * 60.00255 * 16 14 12 39 39 H 1.09003 * 109.47352 * 179.97438 * 16 14 12 40 40 H 1.08999 * 109.47237 * 299.99927 * 16 14 12 41 41 H 0.96995 * 119.99934 * 24.99518 * 17 14 12 42 42 H 0.96994 * 120.00536 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.68293 * 249.21239 * 26 8 6 44 44 H 1.09003 * 109.67663 * 9.76247 * 26 8 6 45 45 H 1.08002 * 126.03743 * 179.71870 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 0.0038 5 6 4.5308 2.0244 0.0093 6 6 4.2377 2.9418 -1.1499 7 8 3.3231 2.6906 -1.9058 8 7 4.9918 4.0412 -1.3466 9 6 6.1064 4.3670 -0.4426 10 6 5.9571 5.8263 0.0026 11 8 5.8115 6.6579 -1.1512 12 6 4.6434 6.3819 -1.9279 13 1 3.7572 6.4830 -1.3012 14 6 4.5600 7.3693 -3.0937 15 1 3.7198 7.1036 -3.7353 16 6 5.8573 7.3135 -3.9030 17 7 4.3673 8.7249 -2.5729 18 6 3.7682 9.6788 -3.3516 19 1 3.4382 9.4318 -4.3499 20 6 3.5851 10.9631 -2.8579 21 7 3.0098 11.8802 -3.6064 22 14 4.1554 11.3901 -1.1310 23 1 5.5579 11.8759 -1.1788 24 1 3.2824 12.4523 -0.5699 25 1 4.0792 10.1815 -0.2716 26 6 4.7286 4.9485 -2.4749 27 6 3.9354 -0.4008 -0.0028 28 16 2.4856 -1.4021 -0.0074 29 1 -0.3634 -1.0276 -0.0050 30 1 -0.3632 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 4.4373 2.5781 0.9435 33 1 5.5449 1.6355 -0.0827 34 1 6.0759 3.7125 0.4284 35 1 7.0536 4.2374 -0.9662 36 1 5.0758 5.9253 0.6362 37 1 6.8429 6.1289 0.5610 38 1 6.0007 6.3048 -4.2906 39 1 5.7978 8.0165 -4.7338 40 1 6.6974 7.5791 -3.2614 41 1 4.6640 8.9467 -1.6765 42 1 2.8815 12.7776 -3.2614 43 1 5.5392 4.8772 -3.2002 44 1 3.7854 4.6791 -2.9501 45 1 4.9546 -0.7583 -0.0055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717618131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -9.700663 kcal Electronic energy + Delta-G solvation = -27360.132290 eV Core-core repulsion = 23505.554723 eV Total energy + Delta-G solvation = -3854.577567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.76749 -39.85163 -38.30548 -35.67198 -34.60836 -33.46765 -32.47389 -30.81136 -30.01189 -28.82804 -28.29983 -26.95513 -24.82151 -23.42277 -23.30352 -22.03602 -20.07850 -19.82230 -19.40926 -18.00089 -17.64803 -17.31237 -16.48217 -15.99615 -15.64803 -15.44457 -15.18448 -15.00745 -14.62778 -14.44373 -14.07108 -13.93680 -13.79659 -13.37173 -13.22860 -12.86149 -12.75492 -12.67741 -12.52464 -12.38085 -12.30634 -12.08220 -11.73731 -11.52432 -11.26596 -10.91375 -10.75273 -10.63250 -10.33044 -10.04601 -9.93152 -9.87025 -9.79174 -9.63348 -9.54630 -8.99874 -8.89494 -8.54552 -7.22631 -5.72642 -3.07604 0.42683 1.07751 1.41465 2.42490 2.52061 2.87468 3.42567 3.47386 3.49393 3.72275 3.84539 4.31360 4.47869 4.62555 4.64565 4.70573 4.79578 4.88298 4.94855 4.97813 5.02348 5.06439 5.18176 5.23868 5.31683 5.39299 5.54925 5.56533 5.57072 5.61617 5.73274 5.74677 5.85084 5.92805 6.15033 6.30458 6.37603 6.50359 6.76941 7.08837 7.21972 7.33920 7.54043 8.03728 8.06668 8.46645 9.25999 9.98368 10.19491 11.45663 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.002417 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.570295 B =11581.995411 C =12074.311196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.056 3.944 3 N -0.448 5.448 4 C 0.091 3.909 5 C -0.066 4.066 6 C 0.520 3.480 7 O -0.518 6.518 8 N -0.617 5.617 9 C 0.072 3.928 10 C 0.044 3.956 11 O -0.363 6.363 12 C 0.072 3.928 13 H 0.064 0.936 14 C 0.190 3.810 15 H 0.068 0.932 16 C -0.163 4.163 17 N -0.744 5.744 18 C -0.242 4.242 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.086 3.914 27 C -0.261 4.261 28 S 0.108 5.892 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.366 0.634 42 H 0.259 0.741 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -29.449 11.625 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.223 4.223 3 N -0.162 5.162 4 C -0.042 4.042 5 C -0.108 4.108 6 C 0.307 3.693 7 O -0.393 6.393 8 N -0.353 5.353 9 C -0.051 4.051 10 C -0.034 4.034 11 O -0.281 6.281 12 C 0.013 3.987 13 H 0.082 0.918 14 C 0.080 3.920 15 H 0.086 0.914 16 C -0.222 4.222 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.203 1.203 26 C -0.037 4.037 27 C -0.400 4.400 28 S 0.362 5.638 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.199 0.801 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.541 -29.894 10.963 32.037 hybrid contribution 1.056 0.955 1.367 1.974 sum 4.597 -28.939 12.329 31.790 Atomic orbital electron populations 1.20445 0.85103 1.03367 1.04794 1.27078 1.01868 0.90473 1.02898 1.65974 1.04207 1.31261 1.14762 1.19546 0.90043 0.92953 1.01637 1.20264 0.97919 0.93390 0.99254 1.20253 0.81838 0.81076 0.86182 1.90742 1.29387 1.72511 1.46619 1.48172 1.32544 1.24865 1.29692 1.22492 0.90223 0.98119 0.94260 1.22917 1.02447 0.89016 0.89002 1.88069 1.44426 1.57849 1.37757 1.23097 0.87987 0.93349 0.94254 0.91753 1.20170 0.96467 0.84474 0.90875 0.91423 1.22381 0.99723 0.99394 1.00739 1.42698 1.72879 1.06857 1.16254 1.19082 1.30594 0.89476 0.97997 0.89160 1.24651 1.00764 0.95995 0.97736 1.69700 1.48705 1.03371 1.36484 0.86528 0.78337 0.77641 0.85942 1.21084 1.21913 1.20295 1.22507 1.03963 0.88823 0.88401 1.26712 1.03244 0.95652 1.14377 1.83900 0.97834 1.13214 1.68813 0.90328 0.89333 0.89101 0.87168 0.87277 0.89229 0.90255 0.92853 0.87838 0.94339 0.92406 0.92542 0.80090 0.93112 0.90065 0.88110 0.80591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.47 36.01 0.38 -0.18 16 2 C 0.06 0.58 7.39 -13.46 -0.10 0.48 16 3 N -0.45 -5.87 9.67 -8.05 -0.08 -5.95 16 4 C 0.09 1.01 5.64 -84.22 -0.48 0.53 16 5 C -0.07 -0.60 4.57 -29.03 -0.13 -0.73 16 6 C 0.52 6.85 7.68 -10.99 -0.08 6.77 16 7 O -0.52 -9.07 14.90 5.55 0.08 -8.99 16 8 N -0.62 -7.54 3.01 -172.04 -0.52 -8.06 16 9 C 0.07 0.64 6.54 -3.53 -0.02 0.61 16 10 C 0.04 0.49 6.99 37.31 0.26 0.75 16 11 O -0.36 -5.69 9.24 -35.23 -0.33 -6.02 16 12 C 0.07 1.20 2.62 -26.39 -0.07 1.13 16 13 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 14 C 0.19 3.73 2.77 -67.93 -0.19 3.54 16 15 H 0.07 1.35 8.08 -51.93 -0.42 0.94 16 16 C -0.16 -2.91 9.06 37.16 0.34 -2.58 16 17 N -0.74 -18.06 4.91 -53.43 -0.26 -18.32 16 18 C -0.24 -6.91 10.41 -15.06 -0.16 -7.07 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.77 13.97 55.49 0.78 -28.99 16 22 Si 0.89 22.72 27.73 -169.99 -4.71 18.01 16 23 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 26 C 0.09 1.22 5.84 -3.34 -0.02 1.20 16 27 C -0.26 -2.26 11.07 29.12 0.32 -1.94 16 28 S 0.11 0.87 23.17 -107.50 -2.49 -1.62 16 29 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.83 7.66 -51.93 -0.40 0.43 16 33 H 0.11 0.62 7.90 -51.93 -0.41 0.21 16 34 H 0.09 0.49 6.05 -51.93 -0.31 0.18 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.57 6.42 -51.93 -0.33 0.24 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.03 7.56 -51.93 -0.39 0.64 16 41 H 0.37 8.93 5.44 -40.82 -0.22 8.71 16 42 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 43 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 44 H 0.10 1.58 7.08 -51.93 -0.37 1.21 16 45 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -37.26 375.90 -8.49 -45.75 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.58 Total: 5.98 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.05 Total: 2.54 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.08 Total: -61.32 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.24 Total: -15.01 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.01 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.26 -8.49 -45.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.050 kcal (2) G-P(sol) polarization free energy of solvation -37.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds