Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91641 * 2 1 4 4 C 1.31791 * 117.12054 * 179.81644 * 3 2 1 5 5 C 1.50700 * 122.74601 * 180.22754 * 4 3 2 6 6 C 1.50701 * 109.47099 * 305.26113 * 5 4 3 7 7 O 1.21283 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00098 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98176 * 359.97438 * 8 6 5 10 10 C 1.53295 * 108.38590 * 230.51208 * 9 8 6 11 11 O 1.42970 * 109.22221 * 307.70096 * 10 9 8 12 12 C 1.42962 * 114.16708 * 62.57624 * 11 10 9 13 13 H 1.09008 * 109.50991 * 57.34752 * 12 11 10 14 14 C 1.53001 * 109.51018 * 177.44090 * 12 11 10 15 15 H 1.09001 * 109.46771 * 174.99972 * 14 12 11 16 16 C 1.53000 * 109.46774 * 55.00332 * 14 12 11 17 17 N 1.46493 * 109.47522 * 295.00635 * 14 12 11 18 18 C 1.36939 * 119.99816 * 205.00265 * 17 14 12 19 19 H 1.08002 * 120.00138 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99968 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00498 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99877 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47122 * 90.00340 * 22 20 18 24 24 H 1.48500 * 109.47119 * 210.00353 * 22 20 18 25 25 H 1.48494 * 109.47435 * 330.00367 * 22 20 18 26 26 C 1.47154 * 120.98424 * 179.72008 * 8 6 5 27 27 C 1.33641 * 114.50066 * 0.46688 * 4 3 2 28 28 S 1.70982 * 124.91206 * 180.30300 * 2 1 3 29 29 H 1.08995 * 109.47411 * 179.72158 * 1 2 3 30 30 H 1.08998 * 109.46596 * 299.72097 * 1 2 3 31 31 H 1.09004 * 109.46950 * 59.71917 * 1 2 3 32 32 H 1.09000 * 109.47715 * 65.26528 * 5 4 3 33 33 H 1.09002 * 109.46743 * 185.26757 * 5 4 3 34 34 H 1.08999 * 109.68216 * 350.23902 * 9 8 6 35 35 H 1.09005 * 109.67875 * 110.75229 * 9 8 6 36 36 H 1.08998 * 109.51276 * 67.61835 * 10 9 8 37 37 H 1.08993 * 109.51202 * 187.72581 * 10 9 8 38 38 H 1.09006 * 109.47138 * 60.00255 * 16 14 12 39 39 H 1.09003 * 109.47352 * 179.97438 * 16 14 12 40 40 H 1.08999 * 109.47237 * 299.99927 * 16 14 12 41 41 H 0.96995 * 119.99934 * 24.99518 * 17 14 12 42 42 H 0.96994 * 120.00536 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.68293 * 249.21239 * 26 8 6 44 44 H 1.09003 * 109.67663 * 9.76247 * 26 8 6 45 45 H 1.08002 * 126.03743 * 179.71870 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 0.0038 5 6 4.5308 2.0244 0.0093 6 6 4.2377 2.9418 -1.1499 7 8 3.3231 2.6906 -1.9058 8 7 4.9918 4.0412 -1.3466 9 6 6.1064 4.3670 -0.4426 10 6 5.9571 5.8263 0.0026 11 8 5.8115 6.6579 -1.1512 12 6 4.6434 6.3819 -1.9279 13 1 3.7572 6.4830 -1.3012 14 6 4.5600 7.3693 -3.0937 15 1 3.7198 7.1036 -3.7353 16 6 5.8573 7.3135 -3.9030 17 7 4.3673 8.7249 -2.5729 18 6 3.7682 9.6788 -3.3516 19 1 3.4382 9.4318 -4.3499 20 6 3.5851 10.9631 -2.8579 21 7 3.0098 11.8802 -3.6064 22 14 4.1554 11.3901 -1.1310 23 1 5.5579 11.8759 -1.1788 24 1 3.2824 12.4523 -0.5699 25 1 4.0792 10.1815 -0.2716 26 6 4.7286 4.9485 -2.4749 27 6 3.9354 -0.4008 -0.0028 28 16 2.4856 -1.4021 -0.0074 29 1 -0.3634 -1.0276 -0.0050 30 1 -0.3632 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 4.4373 2.5781 0.9435 33 1 5.5449 1.6355 -0.0827 34 1 6.0759 3.7125 0.4284 35 1 7.0536 4.2374 -0.9662 36 1 5.0758 5.9253 0.6362 37 1 6.8429 6.1289 0.5610 38 1 6.0007 6.3048 -4.2906 39 1 5.7978 8.0165 -4.7338 40 1 6.6974 7.5791 -3.2614 41 1 4.6640 8.9467 -1.6765 42 1 2.8815 12.7776 -3.2614 43 1 5.5392 4.8772 -3.2002 44 1 3.7854 4.6791 -2.9501 45 1 4.9546 -0.7583 -0.0055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717618131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -37.418098 kcal Electronic energy + Delta-G solvation = -27361.334208 eV Core-core repulsion = 23505.554723 eV Total energy + Delta-G solvation = -3855.779485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66764 -40.72265 -39.41342 -37.26280 -35.73475 -34.44623 -34.04978 -32.38014 -30.84293 -30.20967 -29.05471 -28.03155 -26.33878 -24.77087 -24.16000 -23.28307 -21.41505 -20.78617 -20.26915 -19.78801 -18.65195 -18.25773 -17.63238 -17.01718 -16.75436 -16.40996 -16.36987 -16.11630 -15.82443 -15.68312 -15.30925 -14.81960 -14.64404 -14.57557 -14.43102 -14.32399 -14.05973 -13.83248 -13.56150 -13.25773 -13.11522 -13.07479 -12.95774 -12.91181 -12.52775 -12.38667 -12.26862 -12.13228 -11.83177 -11.73432 -11.60294 -11.19906 -10.98358 -10.85872 -10.51729 -10.30785 -9.65981 -9.56846 -9.33197 -8.02721 -5.35679 -0.23055 0.46465 0.76144 1.36750 1.39953 1.47428 1.57959 1.64024 2.03670 2.48087 2.74395 3.12031 3.28921 3.40060 3.56098 3.81920 3.89296 3.93964 3.99418 4.10750 4.14088 4.27313 4.33345 4.36503 4.42622 4.47055 4.50523 4.58964 4.62076 4.63043 4.74804 4.81645 4.82251 4.96237 4.98867 5.04124 5.20901 5.21995 5.32588 5.57606 5.75829 6.17905 6.23811 6.32299 6.88017 7.07171 7.12689 7.83206 8.04035 9.18845 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.002417 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.570295 B =11581.995411 C =12074.311196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.028 3.972 3 N -0.495 5.495 4 C 0.058 3.942 5 C -0.058 4.058 6 C 0.513 3.487 7 O -0.572 6.572 8 N -0.617 5.617 9 C 0.074 3.926 10 C 0.034 3.966 11 O -0.383 6.383 12 C 0.090 3.910 13 H 0.042 0.958 14 C 0.180 3.820 15 H 0.054 0.946 16 C -0.149 4.149 17 N -0.747 5.747 18 C -0.228 4.228 19 H 0.058 0.942 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.257 1.257 26 C 0.095 3.905 27 C -0.255 4.255 28 S 0.148 5.852 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.057 0.943 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -32.315 14.297 36.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.250 4.250 3 N -0.211 5.211 4 C -0.075 4.075 5 C -0.099 4.099 6 C 0.303 3.697 7 O -0.450 6.450 8 N -0.351 5.351 9 C -0.048 4.048 10 C -0.043 4.043 11 O -0.301 6.301 12 C 0.031 3.969 13 H 0.060 0.940 14 C 0.071 3.929 15 H 0.072 0.928 16 C -0.208 4.208 17 N -0.391 5.391 18 C -0.359 4.359 19 H 0.076 0.924 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.182 1.182 26 C -0.029 4.029 27 C -0.394 4.394 28 S 0.403 5.597 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.201 0.799 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.319 -32.820 13.666 36.109 hybrid contribution 0.205 1.713 0.489 1.793 sum 6.524 -31.108 14.155 34.794 Atomic orbital electron populations 1.20535 0.83957 1.04907 1.04324 1.27502 1.03088 0.91278 1.03154 1.65993 1.05712 1.33157 1.16211 1.19904 0.89857 0.94450 1.03241 1.20386 0.99598 0.92298 0.97666 1.21071 0.80777 0.81316 0.86576 1.90720 1.31688 1.73860 1.48773 1.48280 1.33299 1.24136 1.29411 1.22763 0.89488 0.97268 0.95274 1.23293 1.03606 0.89963 0.87478 1.88016 1.43261 1.59613 1.39251 1.22593 0.87942 0.93520 0.92873 0.93958 1.20381 0.96917 0.83078 0.92501 0.92776 1.22188 0.98348 1.00791 0.99483 1.42688 1.72625 1.07890 1.15891 1.19044 1.29359 0.90452 0.97061 0.92418 1.25473 1.01804 0.95980 1.02354 1.69878 1.50979 1.03817 1.38790 0.85383 0.77757 0.77733 0.80739 1.20319 1.22220 1.18218 1.22198 1.03354 0.87909 0.89462 1.27160 1.04936 0.95029 1.12267 1.83685 0.96937 1.11505 1.67550 0.87780 0.89041 0.90312 0.85425 0.83057 0.85098 0.88380 0.93465 0.84759 0.90979 0.94798 0.92408 0.79929 0.93356 0.88872 0.90366 0.77363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.47 71.24 0.75 -0.37 16 2 C 0.03 0.56 7.39 88.52 0.65 1.21 16 3 N -0.50 -12.82 9.67 -179.39 -1.73 -14.55 16 4 C 0.06 1.16 5.64 41.52 0.23 1.40 16 5 C -0.06 -0.86 4.57 29.10 0.13 -0.73 16 6 C 0.51 12.70 7.68 87.66 0.67 13.38 16 7 O -0.57 -20.28 14.90 -3.04 -0.05 -20.33 16 8 N -0.62 -13.64 3.01 -816.61 -2.46 -16.10 16 9 C 0.07 0.97 6.54 86.35 0.56 1.53 16 10 C 0.03 0.62 6.99 72.08 0.50 1.12 16 11 O -0.38 -11.15 9.24 -148.98 -1.38 -12.52 16 12 C 0.09 2.94 2.62 30.82 0.08 3.02 16 13 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 14 C 0.18 7.12 2.77 44.99 0.12 7.25 16 15 H 0.05 2.27 8.08 -2.39 -0.02 2.25 16 16 C -0.15 -5.24 9.06 71.98 0.65 -4.59 16 17 N -0.75 -36.63 4.91 -322.95 -1.58 -38.21 16 18 C -0.23 -13.46 10.41 84.03 0.87 -12.58 16 19 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.98 -64.70 13.97 21.65 0.30 -64.40 16 22 Si 0.96 47.41 27.73 68.60 1.90 49.31 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 26 C 0.09 2.62 5.84 86.48 0.50 3.13 16 27 C -0.25 -3.65 11.07 66.78 0.74 -2.91 16 28 S 0.15 2.10 23.17 -56.49 -1.31 0.79 16 29 H 0.10 0.86 8.12 -2.39 -0.02 0.85 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 1.43 7.66 -2.39 -0.02 1.41 16 33 H 0.15 0.88 7.90 -2.39 -0.02 0.86 16 34 H 0.13 0.67 6.05 -2.39 -0.01 0.65 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.03 6.42 -2.38 -0.02 2.02 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 2.02 7.56 -2.39 -0.02 2.00 16 41 H 0.37 17.65 5.44 -92.71 -0.50 17.15 16 42 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 43 H 0.09 2.34 6.28 -2.39 -0.01 2.32 16 44 H 0.08 2.54 7.08 -2.39 -0.02 2.52 16 45 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -86.21 375.90 1.09 -85.12 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.45 Total: 23.52 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.95 Total: 7.37 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -5.48 Total: -133.26 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.42 Total: -32.85 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.90 Total: 49.31 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.31 Total: 0.79 kcal Total: -86.21 1.09 -85.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.698 kcal (2) G-P(sol) polarization free energy of solvation -86.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds