Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29026 * 124.91188 * 2 1 4 4 C 1.31786 * 117.12545 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75184 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47486 * 305.03159 * 5 4 3 7 7 O 1.21281 * 119.99923 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00121 * 179.97438 * 6 5 4 9 9 C 1.47151 * 120.98410 * 359.97438 * 8 6 5 10 10 C 1.53289 * 108.38681 * 129.47968 * 9 8 6 11 11 O 1.42960 * 109.26605 * 52.27997 * 10 9 8 12 12 C 1.42960 * 114.16915 * 297.50104 * 11 10 9 13 13 H 1.09006 * 109.51474 * 302.54855 * 12 11 10 14 14 C 1.52997 * 109.51691 * 182.44473 * 12 11 10 15 15 H 1.08990 * 109.47430 * 185.10113 * 14 12 11 16 16 C 1.52998 * 109.47053 * 305.10322 * 14 12 11 17 17 N 1.46499 * 109.46833 * 65.09761 * 14 12 11 18 18 C 1.36935 * 119.99926 * 155.00421 * 17 14 12 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 14 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 14 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 C 1.47152 * 120.98350 * 179.97438 * 8 6 5 27 27 C 1.33642 * 114.49530 * 0.23849 * 4 3 2 28 28 S 1.70973 * 124.91893 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47060 * 90.00280 * 1 2 3 30 30 H 1.09004 * 109.46557 * 209.99716 * 1 2 3 31 31 H 1.08991 * 109.47442 * 329.99816 * 1 2 3 32 32 H 1.08997 * 109.47138 * 185.02620 * 5 4 3 33 33 H 1.09005 * 109.46679 * 65.03092 * 5 4 3 34 34 H 1.08995 * 109.68172 * 249.20678 * 9 8 6 35 35 H 1.08999 * 109.67716 * 9.75833 * 9 8 6 36 36 H 1.09005 * 109.51503 * 172.22814 * 10 9 8 37 37 H 1.09006 * 109.51733 * 292.32810 * 10 9 8 38 38 H 1.08998 * 109.47317 * 299.99808 * 16 14 12 39 39 H 1.09007 * 109.47248 * 59.99543 * 16 14 12 40 40 H 1.08997 * 109.47450 * 179.97438 * 16 14 12 41 41 H 0.97005 * 120.00261 * 335.00546 * 17 14 12 42 42 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.68156 * 110.79018 * 26 8 6 44 44 H 1.09008 * 109.68163 * 350.24441 * 26 8 6 45 45 H 1.08007 * 126.03249 * 179.76323 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5307 2.0248 0.0000 6 6 4.2378 2.9359 -1.1641 7 8 3.3239 2.6801 -1.9193 8 7 4.9913 4.0349 -1.3659 9 6 6.1049 4.3662 -0.4629 10 6 7.3533 4.6319 -1.3119 11 8 7.0425 5.5990 -2.3177 12 6 6.0403 5.1771 -3.2457 13 1 6.3568 4.2521 -3.7280 14 6 5.8356 6.2617 -4.3053 15 1 5.0098 5.9802 -4.9585 16 6 5.5129 7.5905 -3.6191 17 7 7.0586 6.4061 -5.0987 18 6 6.9927 6.8986 -6.3747 19 1 6.0390 7.1800 -6.7964 20 6 8.1522 7.0407 -7.1246 21 7 9.3150 6.7027 -6.6089 22 14 8.0624 7.7131 -8.8651 23 1 8.1985 9.1915 -8.8323 24 1 9.1617 7.1327 -9.6773 25 1 6.7554 7.3497 -9.4693 26 6 4.7248 4.9390 -2.4959 27 6 3.9354 -0.4005 -0.0041 28 16 2.4857 -1.4019 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 5.5448 1.6355 -0.0894 33 1 4.4368 2.5835 0.9313 34 1 5.8570 5.2569 0.1142 35 1 6.2910 3.5308 0.2121 36 1 8.1522 5.0124 -0.6754 37 1 7.6756 3.7046 -1.7856 38 1 4.6030 7.4831 -3.0287 39 1 6.3388 7.8720 -2.9657 40 1 5.3676 8.3634 -4.3738 41 1 7.9151 6.1530 -4.7201 42 1 10.1253 6.8024 -7.1327 43 1 4.3377 5.8876 -2.1237 44 1 3.9970 4.4831 -3.1672 45 1 4.9546 -0.7579 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717618133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -13.528249 kcal Electronic energy + Delta-G solvation = -27236.508551 eV Core-core repulsion = 23381.765007 eV Total energy + Delta-G solvation = -3854.743544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70760 -39.78520 -38.20552 -35.49904 -34.49355 -33.43187 -32.47166 -30.60031 -29.87587 -28.47957 -28.17891 -26.84882 -24.74929 -23.44686 -23.34208 -22.15413 -20.04845 -19.66623 -19.36157 -17.85627 -17.39702 -17.10516 -16.36607 -15.88107 -15.64547 -15.31754 -15.18807 -14.95842 -14.54844 -14.37479 -14.01125 -13.81890 -13.65585 -13.32297 -13.27621 -12.90712 -12.78352 -12.52335 -12.44935 -12.33371 -12.12379 -11.93586 -11.65707 -11.30056 -11.10824 -10.82426 -10.71557 -10.50943 -10.26011 -10.02812 -9.84022 -9.80946 -9.75427 -9.62959 -9.58981 -8.95295 -8.87271 -8.44926 -6.91137 -5.71588 -3.00125 0.45910 1.10823 1.45576 2.45754 2.60000 2.93607 3.46558 3.51673 3.53215 3.75150 3.98516 4.37611 4.53058 4.60589 4.75100 4.76407 4.89089 4.93515 4.99633 5.06127 5.10180 5.15620 5.20406 5.36170 5.41309 5.45950 5.54767 5.61462 5.69731 5.73098 5.82714 5.89207 6.01247 6.03278 6.23944 6.40493 6.49068 6.68275 6.85137 7.18492 7.29838 7.49340 7.56345 7.73897 8.13073 8.46700 9.58535 10.16284 10.53044 11.50906 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002247 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.828618 B =12459.470826 C =12850.831197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.052 3.948 3 N -0.447 5.447 4 C 0.090 3.910 5 C -0.066 4.066 6 C 0.520 3.480 7 O -0.520 6.520 8 N -0.616 5.616 9 C 0.072 3.928 10 C 0.045 3.955 11 O -0.358 6.358 12 C 0.077 3.923 13 H 0.062 0.938 14 C 0.185 3.815 15 H 0.059 0.941 16 C -0.162 4.162 17 N -0.719 5.719 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.085 3.915 27 C -0.258 4.258 28 S 0.108 5.892 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.389 0.611 42 H 0.254 0.746 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 -15.381 20.851 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.226 4.226 3 N -0.162 5.162 4 C -0.043 4.043 5 C -0.108 4.108 6 C 0.307 3.693 7 O -0.395 6.395 8 N -0.351 5.351 9 C -0.052 4.052 10 C -0.033 4.033 11 O -0.276 6.276 12 C 0.017 3.983 13 H 0.080 0.920 14 C 0.074 3.926 15 H 0.077 0.923 16 C -0.222 4.222 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.038 4.038 27 C -0.397 4.397 28 S 0.363 5.637 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.063 -15.871 20.243 28.850 hybrid contribution 1.041 0.784 -0.761 1.509 sum -12.022 -15.088 19.483 27.418 Atomic orbital electron populations 1.20444 0.85166 1.04027 1.04091 1.27042 1.01835 0.90587 1.03180 1.65995 1.04232 1.31261 1.14672 1.19548 0.90038 0.93006 1.01702 1.20261 0.97917 0.93455 0.99182 1.20241 0.82000 0.80887 0.86213 1.90734 1.29707 1.72343 1.46733 1.48166 1.32481 1.25092 1.29399 1.22512 0.87599 1.02051 0.93000 1.22900 0.95500 0.93977 0.90894 1.88105 1.58078 1.40337 1.41049 1.22964 0.86338 0.99344 0.89631 0.91955 1.20192 0.91630 0.91319 0.89452 0.92337 1.22412 0.99507 0.99997 1.00301 1.42354 1.03708 1.77077 1.12925 1.19253 0.93254 1.34540 0.89850 0.91185 1.24735 0.95394 1.02331 0.98526 1.69679 0.97300 1.54085 1.36908 0.86203 0.76885 0.78578 0.84618 1.21765 1.21846 1.20782 1.22454 0.99002 0.93716 0.88625 1.26746 1.03303 0.95646 1.13999 1.83893 0.97843 1.13099 1.68855 0.89443 0.90193 0.89239 0.87249 0.87171 0.90320 0.89300 0.87859 0.92902 0.94650 0.92441 0.92917 0.77695 0.93600 0.90203 0.88330 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.46 36.01 0.38 -0.16 16 2 C 0.05 0.54 7.39 -13.45 -0.10 0.45 16 3 N -0.45 -5.86 9.68 -8.05 -0.08 -5.93 16 4 C 0.09 1.03 5.64 -84.22 -0.47 0.56 16 5 C -0.07 -0.63 4.57 -29.04 -0.13 -0.77 16 6 C 0.52 7.17 7.68 -10.99 -0.08 7.08 16 7 O -0.52 -9.39 14.91 5.56 0.08 -9.31 16 8 N -0.62 -7.99 3.02 -172.29 -0.52 -8.51 16 9 C 0.07 0.69 6.54 -3.54 -0.02 0.67 16 10 C 0.05 0.54 6.98 37.31 0.26 0.80 16 11 O -0.36 -6.02 9.24 -35.23 -0.33 -6.35 16 12 C 0.08 1.33 2.60 -26.59 -0.07 1.26 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.18 3.77 2.77 -67.93 -0.19 3.58 16 15 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 16 C -0.16 -3.04 9.06 37.16 0.34 -2.71 16 17 N -0.72 -18.46 5.10 -53.43 -0.27 -18.73 16 18 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 C 0.08 1.28 5.82 -3.54 -0.02 1.26 16 27 C -0.26 -2.40 11.07 29.12 0.32 -2.08 16 28 S 0.11 0.92 23.18 -107.50 -2.49 -1.57 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.73 7.54 -51.93 -0.39 0.34 16 33 H 0.11 0.84 8.01 -51.93 -0.42 0.42 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.55 6.05 -51.93 -0.31 0.23 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 39 H 0.06 1.13 7.56 -51.92 -0.39 0.73 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.39 10.74 7.58 -40.82 -0.31 10.43 16 42 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 1.16 6.27 -51.93 -0.33 0.84 16 44 H 0.10 1.61 7.08 -51.92 -0.37 1.25 16 45 H 0.18 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -36.28 379.02 -8.86 -45.13 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.62 Total: 7.09 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.04 Total: 2.59 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.15 Total: -61.00 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.24 Total: -15.65 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.28 -8.86 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.607 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds