Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29026 * 124.91188 * 2 1 4 4 C 1.31786 * 117.12545 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75184 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47486 * 305.03159 * 5 4 3 7 7 O 1.21281 * 119.99923 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00121 * 179.97438 * 6 5 4 9 9 C 1.47151 * 120.98410 * 359.97438 * 8 6 5 10 10 C 1.53289 * 108.38681 * 129.47968 * 9 8 6 11 11 O 1.42960 * 109.26605 * 52.27997 * 10 9 8 12 12 C 1.42960 * 114.16915 * 297.50104 * 11 10 9 13 13 H 1.09006 * 109.51474 * 302.54855 * 12 11 10 14 14 C 1.52997 * 109.51691 * 182.44473 * 12 11 10 15 15 H 1.08990 * 109.47430 * 185.10113 * 14 12 11 16 16 C 1.52998 * 109.47053 * 305.10322 * 14 12 11 17 17 N 1.46499 * 109.46833 * 65.09761 * 14 12 11 18 18 C 1.36935 * 119.99926 * 155.00421 * 17 14 12 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 14 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 14 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 C 1.47152 * 120.98350 * 179.97438 * 8 6 5 27 27 C 1.33642 * 114.49530 * 0.23849 * 4 3 2 28 28 S 1.70973 * 124.91893 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47060 * 90.00280 * 1 2 3 30 30 H 1.09004 * 109.46557 * 209.99716 * 1 2 3 31 31 H 1.08991 * 109.47442 * 329.99816 * 1 2 3 32 32 H 1.08997 * 109.47138 * 185.02620 * 5 4 3 33 33 H 1.09005 * 109.46679 * 65.03092 * 5 4 3 34 34 H 1.08995 * 109.68172 * 249.20678 * 9 8 6 35 35 H 1.08999 * 109.67716 * 9.75833 * 9 8 6 36 36 H 1.09005 * 109.51503 * 172.22814 * 10 9 8 37 37 H 1.09006 * 109.51733 * 292.32810 * 10 9 8 38 38 H 1.08998 * 109.47317 * 299.99808 * 16 14 12 39 39 H 1.09007 * 109.47248 * 59.99543 * 16 14 12 40 40 H 1.08997 * 109.47450 * 179.97438 * 16 14 12 41 41 H 0.97005 * 120.00261 * 335.00546 * 17 14 12 42 42 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.68156 * 110.79018 * 26 8 6 44 44 H 1.09008 * 109.68163 * 350.24441 * 26 8 6 45 45 H 1.08007 * 126.03249 * 179.76323 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5307 2.0248 0.0000 6 6 4.2378 2.9359 -1.1641 7 8 3.3239 2.6801 -1.9193 8 7 4.9913 4.0349 -1.3659 9 6 6.1049 4.3662 -0.4629 10 6 7.3533 4.6319 -1.3119 11 8 7.0425 5.5990 -2.3177 12 6 6.0403 5.1771 -3.2457 13 1 6.3568 4.2521 -3.7280 14 6 5.8356 6.2617 -4.3053 15 1 5.0098 5.9802 -4.9585 16 6 5.5129 7.5905 -3.6191 17 7 7.0586 6.4061 -5.0987 18 6 6.9927 6.8986 -6.3747 19 1 6.0390 7.1800 -6.7964 20 6 8.1522 7.0407 -7.1246 21 7 9.3150 6.7027 -6.6089 22 14 8.0624 7.7131 -8.8651 23 1 8.1985 9.1915 -8.8323 24 1 9.1617 7.1327 -9.6773 25 1 6.7554 7.3497 -9.4693 26 6 4.7248 4.9390 -2.4959 27 6 3.9354 -0.4005 -0.0041 28 16 2.4857 -1.4019 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 5.5448 1.6355 -0.0894 33 1 4.4368 2.5835 0.9313 34 1 5.8570 5.2569 0.1142 35 1 6.2910 3.5308 0.2121 36 1 8.1522 5.0124 -0.6754 37 1 7.6756 3.7046 -1.7856 38 1 4.6030 7.4831 -3.0287 39 1 6.3388 7.8720 -2.9657 40 1 5.3676 8.3634 -4.3738 41 1 7.9151 6.1530 -4.7201 42 1 10.1253 6.8024 -7.1327 43 1 4.3377 5.8876 -2.1237 44 1 3.9970 4.4831 -3.1672 45 1 4.9546 -0.7579 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717618133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -39.753119 kcal Electronic energy + Delta-G solvation = -27237.645746 eV Core-core repulsion = 23381.765007 eV Total energy + Delta-G solvation = -3855.880739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66153 -40.70727 -39.37856 -37.11469 -35.70985 -34.42234 -34.02517 -32.01766 -30.76095 -29.95332 -29.04046 -28.01931 -26.39854 -24.93619 -24.17042 -23.33055 -21.25077 -20.77159 -20.28832 -19.31197 -18.62208 -18.24432 -17.58480 -16.97322 -16.81013 -16.50723 -16.10000 -16.06125 -15.93624 -15.62084 -15.23012 -15.00460 -14.62424 -14.55672 -14.36426 -14.04685 -14.00281 -13.61921 -13.54567 -13.17519 -13.07570 -13.01758 -12.88695 -12.83110 -12.44723 -12.37545 -12.34075 -12.18191 -11.82719 -11.64826 -11.55692 -11.15815 -10.93360 -10.84726 -10.53726 -10.30986 -9.63828 -9.56443 -9.01231 -7.92747 -5.21392 -0.23171 0.46116 0.76621 1.46648 1.48581 1.56637 1.57970 1.64943 2.03143 2.56275 2.80828 3.11616 3.40771 3.51967 3.62590 3.84556 3.94887 4.01264 4.03265 4.11771 4.18349 4.33074 4.36230 4.37938 4.44507 4.46192 4.53760 4.61386 4.63948 4.64240 4.76501 4.82832 4.86464 4.98319 5.00112 5.08830 5.22118 5.23749 5.33199 5.50882 5.60890 6.26687 6.29018 6.33346 6.86734 7.12078 7.35152 8.10425 8.35906 9.30729 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002247 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.828618 B =12459.470826 C =12850.831197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.490 5.490 4 C 0.059 3.941 5 C -0.058 4.058 6 C 0.514 3.486 7 O -0.572 6.572 8 N -0.616 5.616 9 C 0.075 3.925 10 C 0.035 3.965 11 O -0.383 6.383 12 C 0.094 3.906 13 H 0.038 0.962 14 C 0.175 3.825 15 H 0.054 0.946 16 C -0.147 4.147 17 N -0.732 5.732 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.095 3.905 27 C -0.259 4.259 28 S 0.145 5.855 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -16.325 22.740 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.248 4.248 3 N -0.206 5.206 4 C -0.073 4.073 5 C -0.100 4.100 6 C 0.303 3.697 7 O -0.450 6.450 8 N -0.351 5.351 9 C -0.047 4.047 10 C -0.042 4.042 11 O -0.302 6.302 12 C 0.035 3.965 13 H 0.056 0.944 14 C 0.067 3.933 15 H 0.072 0.928 16 C -0.207 4.207 17 N -0.372 5.372 18 C -0.371 4.371 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.029 4.029 27 C -0.398 4.398 28 S 0.400 5.600 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.400 -16.815 22.180 30.891 hybrid contribution 1.106 0.994 -1.266 1.953 sum -12.294 -15.821 20.914 28.963 Atomic orbital electron populations 1.20564 0.83614 1.05174 1.04409 1.27552 1.03192 0.91133 1.02959 1.66020 1.05425 1.32965 1.16158 1.19883 0.90022 0.94302 1.03103 1.20375 0.99248 0.92479 0.97893 1.21051 0.81038 0.80899 0.86672 1.90709 1.32003 1.73501 1.48826 1.48273 1.33259 1.24563 1.28975 1.22744 0.85051 1.04541 0.92367 1.23254 0.97520 0.93071 0.90307 1.88051 1.57934 1.42203 1.41993 1.22488 0.87870 0.96701 0.89480 0.94392 1.20413 0.89489 0.93348 0.90096 0.92808 1.22204 1.00662 0.98054 0.99787 1.42512 1.04785 1.77075 1.12830 1.19636 0.93379 1.33247 0.90878 0.90706 1.25552 0.95181 1.03613 1.02551 1.69837 0.97781 1.55999 1.38316 0.85153 0.77026 0.77739 0.79937 1.21405 1.22199 1.19550 1.22129 0.96940 0.94540 0.89271 1.27155 1.04921 0.95261 1.12465 1.83699 0.96923 1.11647 1.67766 0.89433 0.87556 0.89613 0.83787 0.84790 0.88960 0.84917 0.85208 0.93266 0.91323 0.93319 0.94477 0.79217 0.94104 0.89350 0.90193 0.77815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.46 71.24 0.75 -0.29 16 2 C 0.03 0.60 7.39 88.52 0.65 1.25 16 3 N -0.49 -12.57 9.68 -179.40 -1.74 -14.31 16 4 C 0.06 1.26 5.64 41.52 0.23 1.49 16 5 C -0.06 -0.96 4.57 29.10 0.13 -0.82 16 6 C 0.51 13.52 7.68 87.66 0.67 14.19 16 7 O -0.57 -20.88 14.91 -3.03 -0.05 -20.93 16 8 N -0.62 -14.95 3.02 -817.41 -2.47 -17.42 16 9 C 0.07 1.18 6.54 86.35 0.56 1.75 16 10 C 0.04 0.76 6.98 72.08 0.50 1.27 16 11 O -0.38 -12.67 9.24 -148.98 -1.38 -14.05 16 12 C 0.09 3.31 2.60 30.69 0.08 3.39 16 13 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 14 C 0.18 7.28 2.77 44.99 0.12 7.40 16 15 H 0.05 2.26 8.08 -2.39 -0.02 2.24 16 16 C -0.15 -5.48 9.06 71.98 0.65 -4.83 16 17 N -0.73 -38.50 5.10 -322.96 -1.65 -40.15 16 18 C -0.24 -13.71 9.93 84.03 0.83 -12.87 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 22 Si 0.97 47.29 29.55 68.60 2.03 49.31 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 C 0.09 2.83 5.82 86.35 0.50 3.34 16 27 C -0.26 -4.22 11.07 66.78 0.74 -3.48 16 28 S 0.14 2.20 23.18 -56.49 -1.31 0.89 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.14 1.28 7.54 -2.39 -0.02 1.26 16 33 H 0.13 1.53 8.01 -2.38 -0.02 1.51 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.13 0.96 6.05 -2.39 -0.01 0.95 16 36 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 2.07 6.42 -2.39 -0.02 2.05 16 39 H 0.05 1.88 7.56 -2.38 -0.02 1.87 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.38 21.44 7.58 -92.70 -0.70 20.74 16 42 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.09 2.46 6.27 -2.39 -0.01 2.45 16 44 H 0.08 2.69 7.08 -2.38 -0.02 2.68 16 45 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -82.19 379.02 0.94 -81.25 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.31 Total: 28.08 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.91 Total: 7.73 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -5.57 Total: -132.28 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.42 Total: -34.98 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.89 kcal Total: -82.19 0.94 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.496 kcal (2) G-P(sol) polarization free energy of solvation -82.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds