Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29025 * 124.91680 * 2 1 4 4 C 1.31777 * 117.12487 * 180.22715 * 3 2 1 5 5 C 1.50700 * 122.75212 * 179.75061 * 4 3 2 6 6 C 1.50696 * 109.47079 * 304.71662 * 5 4 3 7 7 O 1.21279 * 120.00218 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00009 * 179.97438 * 6 5 4 9 9 C 1.47152 * 120.98140 * 359.97438 * 8 6 5 10 10 C 1.53287 * 108.38588 * 230.55466 * 9 8 6 11 11 O 1.42962 * 109.22433 * 307.69962 * 10 9 8 12 12 C 1.42959 * 114.17001 * 62.57675 * 11 10 9 13 13 H 1.09005 * 109.50818 * 57.39409 * 12 11 10 14 14 C 1.52992 * 109.51491 * 177.49501 * 12 11 10 15 15 H 1.09002 * 109.47103 * 184.99979 * 14 12 11 16 16 C 1.52997 * 109.47482 * 305.00226 * 14 12 11 17 17 N 1.46497 * 109.47081 * 65.00502 * 14 12 11 18 18 C 1.36940 * 120.00565 * 154.99853 * 17 14 12 19 19 H 1.08004 * 119.99402 * 359.97438 * 18 17 14 20 20 C 1.38815 * 120.00150 * 179.97438 * 18 17 14 21 21 N 1.31618 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47395 * 89.99619 * 22 20 18 24 24 H 1.48493 * 109.46907 * 209.99948 * 22 20 18 25 25 H 1.48506 * 109.46912 * 329.99546 * 22 20 18 26 26 C 1.47147 * 120.98424 * 180.02562 * 8 6 5 27 27 C 1.33644 * 114.49846 * 359.48514 * 4 3 2 28 28 S 1.70976 * 124.91437 * 179.69985 * 2 1 3 29 29 H 1.09001 * 109.47146 * 180.27943 * 1 2 3 30 30 H 1.09005 * 109.46794 * 300.27310 * 1 2 3 31 31 H 1.08991 * 109.47434 * 60.27529 * 1 2 3 32 32 H 1.08996 * 109.47511 * 184.70924 * 5 4 3 33 33 H 1.09008 * 109.46746 * 64.71476 * 5 4 3 34 34 H 1.09007 * 109.68189 * 110.83044 * 9 8 6 35 35 H 1.09000 * 109.71519 * 350.29949 * 9 8 6 36 36 H 1.09004 * 109.51892 * 187.77227 * 10 9 8 37 37 H 1.09007 * 109.51180 * 67.62394 * 10 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 16 14 12 39 39 H 1.09001 * 109.46832 * 299.99974 * 16 14 12 40 40 H 1.09004 * 109.47261 * 179.97438 * 16 14 12 41 41 H 0.97006 * 119.99921 * 334.99446 * 17 14 12 42 42 H 0.96997 * 119.99796 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.68095 * 9.72266 * 26 8 6 44 44 H 1.09004 * 109.68493 * 249.16782 * 26 8 6 45 45 H 1.08000 * 126.03285 * 180.26715 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 -0.0046 5 6 4.5307 2.0245 -0.0108 6 6 4.2379 2.9298 -1.1793 7 8 3.3240 2.6704 -1.9333 8 7 4.9915 4.0278 -1.3866 9 6 6.1051 4.3634 -0.4852 10 6 5.9540 5.8266 -0.0540 11 8 5.8082 6.6470 -1.2157 12 6 4.6409 6.3625 -1.9905 13 1 3.7542 6.4693 -1.3656 14 6 4.5578 7.3376 -3.1665 15 1 3.6236 7.1785 -3.7051 16 6 4.6061 8.7741 -2.6423 17 7 5.6876 7.1095 -4.0708 18 6 5.5880 7.4556 -5.3920 19 1 4.6763 7.8965 -5.7674 20 6 6.6588 7.2399 -6.2486 21 7 7.7700 6.7031 -5.7910 22 14 6.5231 7.7128 -8.0507 23 1 6.9819 9.1136 -8.2308 24 1 7.3705 6.8056 -8.8656 25 1 5.1088 7.5950 -8.4882 26 6 4.7244 4.9270 -2.5204 27 6 3.9354 -0.4007 0.0021 28 16 2.4856 -1.4020 0.0073 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3633 0.5181 0.8876 31 1 -0.3634 0.5095 -0.8923 32 1 5.5448 1.6348 -0.0982 33 1 4.4368 2.5878 0.9178 34 1 7.0528 4.2305 -1.0071 35 1 6.0755 3.7173 0.3921 36 1 6.8395 6.1360 0.5013 37 1 5.0721 5.9307 0.5782 38 1 5.5404 8.9332 -2.1037 39 1 3.7655 8.9438 -1.9695 40 1 4.5474 9.4689 -3.4802 41 1 6.5063 6.7132 -3.7336 42 1 8.5180 6.5521 -6.3897 43 1 3.7797 4.6539 -2.9908 44 1 5.5327 4.8509 -3.2477 45 1 4.9545 -0.7581 0.0040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717618135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = -13.507807 kcal Electronic energy + Delta-G solvation = -27544.234529 eV Core-core repulsion = 23689.491872 eV Total energy + Delta-G solvation = -3854.742657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58529 -39.68381 -38.11002 -35.45671 -34.42515 -33.33325 -32.25681 -30.51715 -29.78250 -28.35658 -28.24142 -27.12794 -24.19985 -23.47732 -23.24037 -22.15172 -19.96364 -19.67352 -19.18932 -17.79731 -17.31835 -17.13624 -16.26259 -15.77005 -15.58393 -15.28058 -14.92605 -14.72451 -14.65448 -14.23600 -13.91307 -13.65008 -13.61624 -13.33680 -13.15401 -13.05986 -12.63479 -12.45198 -12.32942 -12.20077 -11.92227 -11.78121 -11.56051 -11.28805 -11.15103 -10.80749 -10.75877 -10.42151 -10.25101 -9.99629 -9.83817 -9.74890 -9.62556 -9.54355 -9.51226 -8.89178 -8.88268 -8.28410 -6.89743 -5.71511 -2.99615 0.53007 1.17651 1.51481 2.55644 2.75088 3.11008 3.47118 3.52534 3.53811 3.82771 4.01933 4.49426 4.61840 4.63595 4.84352 4.87739 4.98565 5.02794 5.03895 5.15601 5.16247 5.22753 5.38621 5.44446 5.46974 5.53604 5.60196 5.64018 5.73724 5.83562 5.91348 5.95565 6.07591 6.26553 6.43544 6.45754 6.64510 6.71908 6.83165 7.18285 7.48616 7.52082 7.63830 7.75124 8.30060 8.46872 9.59049 10.15860 10.52936 11.50889 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.002619 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.960727 B =10686.679538 C =11354.519776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.053 3.947 3 N -0.448 5.448 4 C 0.093 3.907 5 C -0.066 4.066 6 C 0.518 3.482 7 O -0.522 6.522 8 N -0.615 5.615 9 C 0.070 3.930 10 C 0.048 3.952 11 O -0.360 6.360 12 C 0.078 3.922 13 H 0.054 0.946 14 C 0.182 3.818 15 H 0.059 0.941 16 C -0.159 4.159 17 N -0.717 5.717 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.282 1.282 26 C 0.088 3.912 27 C -0.259 4.259 28 S 0.106 5.894 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.389 0.611 42 H 0.254 0.746 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -14.514 19.113 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.226 4.226 3 N -0.162 5.162 4 C -0.040 4.040 5 C -0.109 4.109 6 C 0.305 3.695 7 O -0.397 6.397 8 N -0.350 5.350 9 C -0.053 4.053 10 C -0.031 4.031 11 O -0.278 6.278 12 C 0.019 3.981 13 H 0.072 0.928 14 C 0.072 3.928 15 H 0.077 0.923 16 C -0.219 4.219 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.034 4.034 27 C -0.398 4.398 28 S 0.360 5.640 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.224 0.776 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.342 -15.060 18.472 25.598 hybrid contribution 0.968 0.650 -0.798 1.413 sum -8.374 -14.409 17.673 24.292 Atomic orbital electron populations 1.20424 0.85203 1.03301 1.04648 1.27047 1.01801 0.90548 1.03171 1.65956 1.04263 1.31251 1.14719 1.19559 0.89998 0.93035 1.01410 1.20272 0.97927 0.93490 0.99187 1.20195 0.81983 0.81126 0.86206 1.90728 1.29836 1.72074 1.47080 1.48214 1.32142 1.25203 1.29455 1.22481 0.90812 0.97777 0.94224 1.22878 1.01905 0.89503 0.88777 1.88104 1.44698 1.57809 1.37156 1.22901 0.87362 0.94453 0.93381 0.92787 1.20258 0.93164 0.91455 0.87959 0.92281 1.22323 1.00302 0.99162 1.00133 1.42408 1.13579 1.74421 1.05591 1.19246 0.98813 1.33666 0.85118 0.91217 1.24712 0.96253 1.01872 0.98028 1.69668 1.04220 1.49573 1.34487 0.86222 0.77123 0.77683 0.85367 1.21830 1.21898 1.20789 1.22396 1.04846 0.88099 0.88032 1.26726 1.03229 0.95630 1.14249 1.83866 0.97937 1.13250 1.68923 0.90380 0.89450 0.89189 0.87287 0.87329 0.89958 0.89508 0.87990 0.93306 0.92473 0.94884 0.92845 0.77625 0.93630 0.88692 0.88439 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.47 36.01 0.38 -0.21 16 2 C 0.05 0.60 7.39 -13.46 -0.10 0.50 16 3 N -0.45 -6.28 9.70 -8.06 -0.08 -6.36 16 4 C 0.09 1.15 5.63 -84.23 -0.47 0.68 16 5 C -0.07 -0.72 4.57 -29.04 -0.13 -0.85 16 6 C 0.52 8.01 7.68 -10.99 -0.08 7.93 16 7 O -0.52 -10.34 14.93 5.56 0.08 -10.26 16 8 N -0.62 -9.23 3.02 -172.31 -0.52 -9.75 16 9 C 0.07 0.80 6.54 -3.54 -0.02 0.78 16 10 C 0.05 0.57 6.98 37.31 0.26 0.83 16 11 O -0.36 -6.09 9.24 -35.23 -0.33 -6.41 16 12 C 0.08 1.37 2.57 -26.61 -0.07 1.30 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.18 3.70 2.80 -67.94 -0.19 3.51 16 15 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 16 C -0.16 -3.01 9.29 37.16 0.35 -2.66 16 17 N -0.72 -17.90 4.24 -53.43 -0.23 -18.13 16 18 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 22 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 C 0.09 1.61 5.82 -3.56 -0.02 1.58 16 27 C -0.26 -2.62 11.07 29.12 0.32 -2.30 16 28 S 0.11 0.97 23.17 -107.50 -2.49 -1.52 16 29 H 0.08 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.86 7.90 -51.93 -0.41 0.45 16 33 H 0.11 0.95 7.66 -51.92 -0.40 0.55 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.65 6.06 -51.93 -0.31 0.34 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.39 10.43 7.07 -40.82 -0.29 10.14 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.09 1.87 7.08 -51.93 -0.37 1.50 16 44 H 0.10 2.08 6.92 -51.93 -0.36 1.72 16 45 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -35.49 380.26 -8.88 -44.37 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.72 Total: 8.21 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.03 Total: 3.91 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.10 Total: -61.66 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.24 Total: -16.67 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.49 -8.88 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.863 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds