Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29025 * 124.91680 * 2 1 4 4 C 1.31777 * 117.12487 * 180.22715 * 3 2 1 5 5 C 1.50700 * 122.75212 * 179.75061 * 4 3 2 6 6 C 1.50696 * 109.47079 * 304.71662 * 5 4 3 7 7 O 1.21279 * 120.00218 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00009 * 179.97438 * 6 5 4 9 9 C 1.47152 * 120.98140 * 359.97438 * 8 6 5 10 10 C 1.53287 * 108.38588 * 230.55466 * 9 8 6 11 11 O 1.42962 * 109.22433 * 307.69962 * 10 9 8 12 12 C 1.42959 * 114.17001 * 62.57675 * 11 10 9 13 13 H 1.09005 * 109.50818 * 57.39409 * 12 11 10 14 14 C 1.52992 * 109.51491 * 177.49501 * 12 11 10 15 15 H 1.09002 * 109.47103 * 184.99979 * 14 12 11 16 16 C 1.52997 * 109.47482 * 305.00226 * 14 12 11 17 17 N 1.46497 * 109.47081 * 65.00502 * 14 12 11 18 18 C 1.36940 * 120.00565 * 154.99853 * 17 14 12 19 19 H 1.08004 * 119.99402 * 359.97438 * 18 17 14 20 20 C 1.38815 * 120.00150 * 179.97438 * 18 17 14 21 21 N 1.31618 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47395 * 89.99619 * 22 20 18 24 24 H 1.48493 * 109.46907 * 209.99948 * 22 20 18 25 25 H 1.48506 * 109.46912 * 329.99546 * 22 20 18 26 26 C 1.47147 * 120.98424 * 180.02562 * 8 6 5 27 27 C 1.33644 * 114.49846 * 359.48514 * 4 3 2 28 28 S 1.70976 * 124.91437 * 179.69985 * 2 1 3 29 29 H 1.09001 * 109.47146 * 180.27943 * 1 2 3 30 30 H 1.09005 * 109.46794 * 300.27310 * 1 2 3 31 31 H 1.08991 * 109.47434 * 60.27529 * 1 2 3 32 32 H 1.08996 * 109.47511 * 184.70924 * 5 4 3 33 33 H 1.09008 * 109.46746 * 64.71476 * 5 4 3 34 34 H 1.09007 * 109.68189 * 110.83044 * 9 8 6 35 35 H 1.09000 * 109.71519 * 350.29949 * 9 8 6 36 36 H 1.09004 * 109.51892 * 187.77227 * 10 9 8 37 37 H 1.09007 * 109.51180 * 67.62394 * 10 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 16 14 12 39 39 H 1.09001 * 109.46832 * 299.99974 * 16 14 12 40 40 H 1.09004 * 109.47261 * 179.97438 * 16 14 12 41 41 H 0.97006 * 119.99921 * 334.99446 * 17 14 12 42 42 H 0.96997 * 119.99796 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.68095 * 9.72266 * 26 8 6 44 44 H 1.09004 * 109.68493 * 249.16782 * 26 8 6 45 45 H 1.08000 * 126.03285 * 180.26715 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 -0.0046 5 6 4.5307 2.0245 -0.0108 6 6 4.2379 2.9298 -1.1793 7 8 3.3240 2.6704 -1.9333 8 7 4.9915 4.0278 -1.3866 9 6 6.1051 4.3634 -0.4852 10 6 5.9540 5.8266 -0.0540 11 8 5.8082 6.6470 -1.2157 12 6 4.6409 6.3625 -1.9905 13 1 3.7542 6.4693 -1.3656 14 6 4.5578 7.3376 -3.1665 15 1 3.6236 7.1785 -3.7051 16 6 4.6061 8.7741 -2.6423 17 7 5.6876 7.1095 -4.0708 18 6 5.5880 7.4556 -5.3920 19 1 4.6763 7.8965 -5.7674 20 6 6.6588 7.2399 -6.2486 21 7 7.7700 6.7031 -5.7910 22 14 6.5231 7.7128 -8.0507 23 1 6.9819 9.1136 -8.2308 24 1 7.3705 6.8056 -8.8656 25 1 5.1088 7.5950 -8.4882 26 6 4.7244 4.9270 -2.5204 27 6 3.9354 -0.4007 0.0021 28 16 2.4856 -1.4020 0.0073 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3633 0.5181 0.8876 31 1 -0.3634 0.5095 -0.8923 32 1 5.5448 1.6348 -0.0982 33 1 4.4368 2.5878 0.9178 34 1 7.0528 4.2305 -1.0071 35 1 6.0755 3.7173 0.3921 36 1 6.8395 6.1360 0.5013 37 1 5.0721 5.9307 0.5782 38 1 5.5404 8.9332 -2.1037 39 1 3.7655 8.9438 -1.9695 40 1 4.5474 9.4689 -3.4802 41 1 6.5063 6.7132 -3.7336 42 1 8.5180 6.5521 -6.3897 43 1 3.7797 4.6539 -2.9908 44 1 5.5327 4.8509 -3.2477 45 1 4.9545 -0.7581 0.0040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717618135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -38.774320 kcal Electronic energy + Delta-G solvation = -27545.330168 eV Core-core repulsion = 23689.491872 eV Total energy + Delta-G solvation = -3855.838295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63971 -40.69248 -39.36482 -37.09494 -35.73564 -34.25514 -34.01865 -31.83369 -30.79875 -30.09657 -29.11243 -28.25428 -25.89268 -25.03470 -24.15071 -23.30579 -21.26545 -20.77367 -20.25945 -19.35236 -18.64263 -18.26035 -17.57047 -16.91796 -16.85344 -16.33004 -16.17149 -15.99006 -15.77184 -15.72684 -15.10904 -14.94928 -14.70237 -14.54275 -14.43975 -14.07169 -13.95280 -13.51428 -13.48165 -13.12363 -13.07123 -13.00523 -12.91825 -12.77932 -12.53493 -12.48465 -12.30789 -12.18285 -11.77845 -11.68801 -11.50427 -11.09078 -10.94578 -10.82991 -10.53193 -10.29958 -9.65806 -9.54561 -8.95532 -7.90723 -5.17803 -0.23041 0.46463 0.75675 1.46976 1.48225 1.56276 1.59977 1.64848 2.05427 2.57250 2.82215 3.11523 3.43289 3.55510 3.71778 3.85346 3.94679 3.98785 4.06328 4.15578 4.20490 4.28989 4.35088 4.37441 4.44129 4.49550 4.53447 4.63899 4.64296 4.74854 4.81810 4.83558 4.88254 4.99207 5.03824 5.10389 5.20516 5.22706 5.36249 5.53114 5.61032 6.27703 6.32559 6.37043 6.87072 7.13882 7.38103 8.13317 8.39273 9.32549 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.002619 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.960727 B =10686.679538 C =11354.519776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.029 3.971 3 N -0.492 5.492 4 C 0.060 3.940 5 C -0.057 4.057 6 C 0.512 3.488 7 O -0.575 6.575 8 N -0.615 5.615 9 C 0.068 3.932 10 C 0.040 3.960 11 O -0.384 6.384 12 C 0.095 3.905 13 H 0.072 0.928 14 C 0.172 3.828 15 H 0.055 0.945 16 C -0.146 4.146 17 N -0.726 5.726 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.272 1.272 26 C 0.098 3.902 27 C -0.260 4.260 28 S 0.148 5.852 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.377 0.623 42 H 0.249 0.751 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 -15.449 21.349 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.249 4.249 3 N -0.207 5.207 4 C -0.072 4.072 5 C -0.098 4.098 6 C 0.301 3.699 7 O -0.454 6.454 8 N -0.349 5.349 9 C -0.054 4.054 10 C -0.037 4.037 11 O -0.303 6.303 12 C 0.036 3.964 13 H 0.090 0.910 14 C 0.063 3.937 15 H 0.072 0.928 16 C -0.206 4.206 17 N -0.367 5.367 18 C -0.367 4.367 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.197 1.197 26 C -0.025 4.025 27 C -0.399 4.399 28 S 0.403 5.597 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.210 0.790 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.503 -15.981 20.761 27.869 hybrid contribution 0.960 0.864 -1.402 1.906 sum -8.543 -15.118 19.358 26.005 Atomic orbital electron populations 1.20542 0.83609 1.04964 1.04460 1.27565 1.03193 0.91146 1.02961 1.65975 1.05440 1.33069 1.16243 1.19858 0.89981 0.94300 1.03069 1.20366 0.99340 0.92513 0.97610 1.21117 0.80897 0.81061 0.86813 1.90700 1.32182 1.73256 1.49267 1.48302 1.33084 1.24684 1.28822 1.22765 0.89011 0.98532 0.95052 1.23249 1.04026 0.89125 0.87326 1.88058 1.44191 1.59234 1.38788 1.22531 0.88550 0.92633 0.92688 0.91004 1.20488 0.91284 0.93330 0.88550 0.92756 1.22136 1.01221 0.97272 0.99972 1.42498 1.14344 1.74352 1.05473 1.19610 0.98605 1.32065 0.86467 0.90852 1.25469 0.96275 1.02965 1.01983 1.69822 1.04863 1.51534 1.35531 0.85220 0.77294 0.77076 0.80679 1.21491 1.22438 1.19719 1.21939 1.01933 0.89805 0.88838 1.27145 1.04969 0.95224 1.12517 1.83651 0.96805 1.11598 1.67665 0.87816 0.88680 0.90245 0.83833 0.84727 0.90676 0.84623 0.85139 0.91627 0.93354 0.91567 0.94348 0.78991 0.94237 0.91124 0.92358 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.47 71.24 0.75 -0.37 16 2 C 0.03 0.63 7.39 88.52 0.65 1.29 16 3 N -0.49 -13.57 9.70 -179.40 -1.74 -15.31 16 4 C 0.06 1.40 5.63 41.52 0.23 1.64 16 5 C -0.06 -1.08 4.57 29.10 0.13 -0.95 16 6 C 0.51 15.50 7.68 87.66 0.67 16.17 16 7 O -0.58 -23.46 14.93 -3.03 -0.05 -23.50 16 8 N -0.61 -18.05 3.02 -817.46 -2.47 -20.51 16 9 C 0.07 1.37 6.54 86.35 0.56 1.93 16 10 C 0.04 0.84 6.98 72.08 0.50 1.34 16 11 O -0.38 -12.60 9.24 -148.98 -1.38 -13.97 16 12 C 0.10 3.32 2.57 30.67 0.08 3.40 16 13 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 14 C 0.17 7.08 2.80 44.99 0.13 7.21 16 15 H 0.05 2.27 8.08 -2.39 -0.02 2.25 16 16 C -0.15 -5.42 9.29 71.98 0.67 -4.75 16 17 N -0.73 -37.26 4.24 -322.95 -1.37 -38.63 16 18 C -0.24 -13.32 9.93 84.03 0.83 -12.48 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 22 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 26 C 0.10 3.72 5.82 86.34 0.50 4.22 16 27 C -0.26 -4.64 11.07 66.78 0.74 -3.90 16 28 S 0.15 2.44 23.17 -56.49 -1.31 1.13 16 29 H 0.10 0.91 8.12 -2.39 -0.02 0.90 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.14 1.67 7.90 -2.39 -0.02 1.66 16 33 H 0.14 1.82 7.66 -2.38 -0.02 1.81 16 34 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.14 1.39 6.06 -2.39 -0.01 1.38 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.38 21.00 7.07 -92.70 -0.66 20.34 16 42 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.07 2.96 7.08 -2.38 -0.02 2.95 16 44 H 0.06 2.65 6.92 -2.39 -0.02 2.63 16 45 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -81.46 380.26 1.28 -80.18 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.35 Total: 30.13 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.92 Total: 10.85 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -5.30 Total: -134.26 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.42 Total: -37.48 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.13 kcal Total: -81.46 1.28 -80.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717618135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.404 kcal (2) G-P(sol) polarization free energy of solvation -81.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds