Wall clock time and date at job start Sat Apr 11 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30259 * 125.62092 * 2 1 4 4 C 1.34474 * 108.70640 * 180.14913 * 3 2 1 5 5 C 1.50692 * 126.16934 * 179.82558 * 4 3 2 6 6 N 1.46903 * 109.47246 * 274.68412 * 5 4 3 7 7 C 1.46897 * 111.00448 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.91765 * 328.90716 * 7 6 5 9 9 C 1.55126 * 110.90267 * 92.97666 * 7 6 5 10 10 N 1.47428 * 104.72365 * 155.27596 * 9 7 6 11 11 C 1.34778 * 125.65154 * 155.81413 * 10 9 7 12 12 O 1.21278 * 119.99748 * 359.72184 * 11 10 9 13 13 C 1.50697 * 120.00209 * 179.71997 * 11 10 9 14 14 S 1.80999 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72221 * 15 14 13 18 18 N 1.31634 * 119.99756 * 0.27728 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00046 * 19 17 15 23 23 C 1.47026 * 108.70004 * 335.55466 * 10 9 7 24 24 C 1.54319 * 107.26997 * 1.28701 * 23 10 9 25 25 H 1.09001 * 110.71987 * 263.64912 * 24 23 10 26 26 C 1.53004 * 110.72235 * 140.55685 * 24 23 10 27 27 C 1.34336 * 107.66597 * 359.55768 * 4 3 2 28 28 O 1.33967 * 125.62382 * 179.65657 * 2 1 3 29 29 H 1.09008 * 109.46846 * 180.31650 * 1 2 3 30 30 H 1.08996 * 109.47206 * 300.31691 * 1 2 3 31 31 H 1.09001 * 109.47580 * 60.32356 * 1 2 3 32 32 H 1.08998 * 109.47363 * 154.68943 * 5 4 3 33 33 H 1.09000 * 109.47189 * 34.68588 * 5 4 3 34 34 H 1.00907 * 110.99590 * 56.04130 * 6 5 4 35 35 H 1.09006 * 110.49974 * 36.43631 * 9 7 6 36 36 H 1.09003 * 110.34770 * 274.04269 * 9 7 6 37 37 H 1.08999 * 109.47278 * 59.99800 * 13 11 10 38 38 H 1.09002 * 109.46837 * 300.00183 * 13 11 10 39 39 H 0.97000 * 119.99219 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.87963 * 120.69933 * 23 10 9 41 41 H 1.08997 * 109.88344 * 241.70776 * 23 10 9 42 42 H 1.08997 * 109.46986 * 61.44651 * 26 24 23 43 43 H 1.08997 * 109.47378 * 181.45041 * 26 24 23 44 44 H 1.08996 * 109.46924 * 301.45150 * 26 24 23 45 45 H 1.07996 * 126.44375 * 180.28904 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 -0.0033 5 6 4.7569 1.5727 -0.0082 6 7 5.0764 1.9554 -1.3901 7 6 6.2480 2.8404 -1.4339 8 1 6.3075 3.4522 -0.5338 9 6 7.5504 2.0244 -1.6444 10 7 8.4933 2.9759 -2.2602 11 6 9.8376 2.8925 -2.2114 12 8 10.3672 1.9770 -1.6179 13 6 10.6826 3.9368 -2.8942 14 16 12.4339 3.5498 -2.6504 15 6 13.1683 4.8906 -3.5265 16 1 12.5433 5.6303 -4.0046 17 6 14.5503 4.9997 -3.5969 18 7 15.3121 4.0984 -3.0137 19 14 15.3289 6.4254 -4.5191 20 1 14.2627 7.2928 -5.0810 21 1 16.1714 7.2168 -3.5869 22 1 16.1717 5.8997 -5.6229 23 6 7.7242 4.0273 -2.9418 24 6 6.2289 3.7258 -2.7078 25 1 5.8085 3.1810 -3.5532 26 6 5.4488 5.0180 -2.4573 27 6 3.5698 -0.6756 0.0045 28 8 2.2872 -1.0889 0.0065 29 1 -0.3633 -1.0277 0.0057 30 1 -0.3633 0.5187 0.8871 31 1 -0.3634 0.5088 -0.8929 32 1 5.6068 1.0489 0.4293 33 1 4.5416 2.4674 0.5760 34 1 4.2816 2.3855 -1.8391 35 1 7.3698 1.1828 -2.3132 36 1 7.9366 1.6734 -0.6874 37 1 10.4639 4.9163 -2.4689 38 1 10.4579 3.9455 -3.9608 39 1 16.2778 4.1744 -3.0633 40 1 7.9759 5.0015 -2.5225 41 1 7.9447 4.0151 -4.0091 42 1 5.5233 5.6629 -3.3329 43 1 4.4019 4.7798 -2.2694 44 1 5.8656 5.5318 -1.5912 45 1 4.4469 -1.3057 0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733840057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:08 Heat of formation + Delta-G solvation = -11.280771 kcal Electronic energy + Delta-G solvation = -25997.951862 eV Core-core repulsion = 22143.305777 eV Total energy + Delta-G solvation = -3854.646086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.68752 -40.02909 -37.94679 -36.08135 -34.58015 -32.93175 -32.41924 -32.19465 -30.20961 -28.76449 -27.44790 -26.46122 -25.59884 -25.29343 -22.30801 -21.91295 -21.43828 -20.52930 -19.35830 -17.73146 -17.43632 -17.17011 -16.78164 -16.36457 -15.69576 -15.37291 -15.00215 -14.80405 -14.73540 -14.55315 -14.14463 -13.84308 -13.80443 -13.59450 -13.44554 -13.31810 -13.05353 -12.78039 -12.66469 -12.48733 -12.23613 -12.14921 -11.73950 -11.56858 -11.34739 -11.24829 -11.06471 -11.00493 -10.93500 -10.76154 -10.75045 -9.79737 -9.39295 -9.16902 -9.06466 -8.86311 -8.44873 -8.21550 -6.48948 -6.20853 -3.91217 1.09436 2.19826 2.39647 2.91099 3.09195 3.22132 3.26509 3.31686 3.51867 3.62604 3.94558 4.12248 4.21238 4.35643 4.40867 4.53941 4.64777 4.79356 4.88305 4.98285 5.05447 5.09834 5.12044 5.14386 5.16872 5.18217 5.29232 5.36910 5.48415 5.54507 5.55688 5.56227 5.65462 5.74795 5.77627 5.87050 5.88555 5.93478 5.99810 6.15871 6.40381 6.64858 6.93399 7.36538 7.60790 7.70338 8.36431 8.58576 9.24555 10.86669 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.001802 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.485073 B =15530.576371 C =16268.252418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.186 3.814 3 N -0.481 5.481 4 C -0.013 4.013 5 C 0.140 3.860 6 N -0.672 5.672 7 C 0.076 3.924 8 H 0.068 0.932 9 C 0.120 3.880 10 N -0.626 5.626 11 C 0.549 3.451 12 O -0.516 6.516 13 C -0.147 4.147 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.109 3.891 24 C -0.105 4.105 25 H 0.094 0.906 26 C -0.145 4.145 27 C -0.053 4.053 28 O -0.204 6.204 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.350 0.650 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.445 -4.567 4.383 32.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.212 5.212 4 C -0.133 4.133 5 C 0.011 3.989 6 N -0.304 5.304 7 C -0.035 4.035 8 H 0.086 0.914 9 C -0.004 4.004 10 N -0.364 5.364 11 C 0.338 3.662 12 O -0.390 6.390 13 C -0.297 4.297 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.015 4.015 24 C -0.125 4.125 25 H 0.112 0.888 26 C -0.203 4.203 27 C -0.124 4.124 28 O -0.090 6.090 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -30.261 -5.986 5.194 31.281 hybrid contribution -0.108 2.103 -1.001 2.332 sum -30.369 -3.882 4.193 30.902 Atomic orbital electron populations 1.20239 0.81388 1.04715 1.05028 1.26288 0.96529 0.78697 1.00556 1.70298 1.01723 1.30445 1.18704 1.21547 0.92647 0.92882 1.06217 1.20208 0.92005 0.96450 0.90227 1.60368 1.08012 1.45876 1.16186 1.22825 0.90681 0.92322 0.97635 0.91435 1.22135 0.87006 0.92235 0.99005 1.48420 1.04913 1.27630 1.55462 1.20008 0.79873 0.86420 0.79943 1.90706 1.71043 1.34651 1.42597 1.23504 1.03535 0.99936 1.02728 1.85399 0.89712 1.36986 1.71357 1.22906 0.94158 1.12125 1.39071 0.90881 1.24996 0.96114 0.96935 0.95547 1.70034 1.05035 1.33757 1.41444 0.86114 0.79067 0.81077 0.79223 1.19623 1.20570 1.20563 1.22029 0.89779 0.91773 0.97938 1.22400 0.95116 0.96751 0.98206 0.88768 1.21805 0.99713 0.96348 1.02414 1.24863 0.84750 0.96235 1.06545 1.84464 1.17092 1.37761 1.69710 0.89400 0.88581 0.88526 0.88947 0.93083 0.83105 0.90678 0.90740 0.89343 0.89302 0.92248 0.91128 0.91084 0.91715 0.92317 0.92173 0.76591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.17 16 2 C 0.19 1.52 8.34 -12.95 -0.11 1.41 16 3 N -0.48 -4.78 11.29 -7.36 -0.08 -4.86 16 4 C -0.01 -0.12 6.62 -82.82 -0.55 -0.67 16 5 C 0.14 1.15 6.09 -4.98 -0.03 1.12 16 6 N -0.67 -5.65 6.40 -105.61 -0.68 -6.33 16 7 C 0.08 0.70 2.84 -65.45 -0.19 0.51 16 8 H 0.07 0.63 7.72 -51.93 -0.40 0.23 16 9 C 0.12 1.50 6.61 -2.41 -0.02 1.49 16 10 N -0.63 -9.30 3.33 -170.38 -0.57 -9.87 16 11 C 0.55 10.87 7.87 -10.99 -0.09 10.78 16 12 O -0.52 -12.23 16.12 5.56 0.09 -12.14 16 13 C -0.15 -3.06 5.35 36.00 0.19 -2.87 16 14 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 15 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 19 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.11 1.20 6.08 -3.06 -0.02 1.19 16 24 C -0.11 -0.89 2.95 -88.79 -0.26 -1.15 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 C -0.15 -0.99 9.13 37.16 0.34 -0.65 16 27 C -0.05 -0.43 12.08 29.36 0.35 -0.07 16 28 O -0.20 -1.79 10.77 5.36 0.06 -1.73 16 29 H 0.09 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.35 2.86 8.43 -39.29 -0.33 2.53 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 45 H 0.22 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -36.44 394.00 -8.55 -44.99 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.02 Total: -1.22 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 0.21 Total: -1.79 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.59 Total: -46.63 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.15 Total: -13.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.44 -8.55 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733840057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.705 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds