Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30259 * 125.62092 * 2 1 4 4 C 1.34474 * 108.70640 * 180.14913 * 3 2 1 5 5 C 1.50692 * 126.16934 * 179.82558 * 4 3 2 6 6 N 1.46903 * 109.47246 * 274.68412 * 5 4 3 7 7 C 1.46897 * 111.00448 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.91765 * 328.90716 * 7 6 5 9 9 C 1.55126 * 110.90267 * 92.97666 * 7 6 5 10 10 N 1.47428 * 104.72365 * 155.27596 * 9 7 6 11 11 C 1.34778 * 125.65154 * 155.81413 * 10 9 7 12 12 O 1.21278 * 119.99748 * 359.72184 * 11 10 9 13 13 C 1.50697 * 120.00209 * 179.71997 * 11 10 9 14 14 S 1.80999 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72221 * 15 14 13 18 18 N 1.31634 * 119.99756 * 0.27728 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00046 * 19 17 15 23 23 C 1.47026 * 108.70004 * 335.55466 * 10 9 7 24 24 C 1.54319 * 107.26997 * 1.28701 * 23 10 9 25 25 H 1.09001 * 110.71987 * 263.64912 * 24 23 10 26 26 C 1.53004 * 110.72235 * 140.55685 * 24 23 10 27 27 C 1.34336 * 107.66597 * 359.55768 * 4 3 2 28 28 O 1.33967 * 125.62382 * 179.65657 * 2 1 3 29 29 H 1.09008 * 109.46846 * 180.31650 * 1 2 3 30 30 H 1.08996 * 109.47206 * 300.31691 * 1 2 3 31 31 H 1.09001 * 109.47580 * 60.32356 * 1 2 3 32 32 H 1.08998 * 109.47363 * 154.68943 * 5 4 3 33 33 H 1.09000 * 109.47189 * 34.68588 * 5 4 3 34 34 H 1.00907 * 110.99590 * 56.04130 * 6 5 4 35 35 H 1.09006 * 110.49974 * 36.43631 * 9 7 6 36 36 H 1.09003 * 110.34770 * 274.04269 * 9 7 6 37 37 H 1.08999 * 109.47278 * 59.99800 * 13 11 10 38 38 H 1.09002 * 109.46837 * 300.00183 * 13 11 10 39 39 H 0.97000 * 119.99219 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.87963 * 120.69933 * 23 10 9 41 41 H 1.08997 * 109.88344 * 241.70776 * 23 10 9 42 42 H 1.08997 * 109.46986 * 61.44651 * 26 24 23 43 43 H 1.08997 * 109.47378 * 181.45041 * 26 24 23 44 44 H 1.08996 * 109.46924 * 301.45150 * 26 24 23 45 45 H 1.07996 * 126.44375 * 180.28904 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 -0.0033 5 6 4.7569 1.5727 -0.0082 6 7 5.0764 1.9554 -1.3901 7 6 6.2480 2.8404 -1.4339 8 1 6.3075 3.4522 -0.5338 9 6 7.5504 2.0244 -1.6444 10 7 8.4933 2.9759 -2.2602 11 6 9.8376 2.8925 -2.2114 12 8 10.3672 1.9770 -1.6179 13 6 10.6826 3.9368 -2.8942 14 16 12.4339 3.5498 -2.6504 15 6 13.1683 4.8906 -3.5265 16 1 12.5433 5.6303 -4.0046 17 6 14.5503 4.9997 -3.5969 18 7 15.3121 4.0984 -3.0137 19 14 15.3289 6.4254 -4.5191 20 1 14.2627 7.2928 -5.0810 21 1 16.1714 7.2168 -3.5869 22 1 16.1717 5.8997 -5.6229 23 6 7.7242 4.0273 -2.9418 24 6 6.2289 3.7258 -2.7078 25 1 5.8085 3.1810 -3.5532 26 6 5.4488 5.0180 -2.4573 27 6 3.5698 -0.6756 0.0045 28 8 2.2872 -1.0889 0.0065 29 1 -0.3633 -1.0277 0.0057 30 1 -0.3633 0.5187 0.8871 31 1 -0.3634 0.5088 -0.8929 32 1 5.6068 1.0489 0.4293 33 1 4.5416 2.4674 0.5760 34 1 4.2816 2.3855 -1.8391 35 1 7.3698 1.1828 -2.3132 36 1 7.9366 1.6734 -0.6874 37 1 10.4639 4.9163 -2.4689 38 1 10.4579 3.9455 -3.9608 39 1 16.2778 4.1744 -3.0633 40 1 7.9759 5.0015 -2.5225 41 1 7.9447 4.0151 -4.0091 42 1 5.5233 5.6629 -3.3329 43 1 4.4019 4.7798 -2.2694 44 1 5.8656 5.5318 -1.5912 45 1 4.4469 -1.3057 0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733840057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -39.404951 kcal Electronic energy + Delta-G solvation = -25999.171418 eV Core-core repulsion = 22143.305777 eV Total energy + Delta-G solvation = -3855.865642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.29451 -41.20561 -39.19066 -36.88686 -35.35392 -34.59242 -33.76700 -32.79147 -31.54509 -29.60178 -28.32670 -27.65471 -27.29660 -26.19928 -23.21198 -22.51785 -22.11728 -21.30149 -20.75124 -19.62290 -18.12531 -18.03284 -17.77242 -17.56269 -16.89157 -16.67539 -16.47290 -16.05156 -15.83364 -15.52453 -15.10636 -14.89607 -14.78667 -14.43926 -14.40441 -14.17540 -13.86586 -13.67802 -13.54230 -13.46979 -13.22480 -13.17837 -13.07603 -12.91744 -12.76665 -12.59668 -12.23371 -12.12868 -11.94092 -11.72078 -11.60054 -11.50148 -11.16259 -10.99131 -10.29040 -9.80357 -9.72756 -9.51756 -8.68855 -8.35322 -6.14089 0.50015 1.22566 1.41551 1.43835 1.53494 1.55584 1.58987 1.87856 2.05397 2.26548 2.97285 2.98973 3.17904 3.23582 3.40088 3.53423 3.76624 3.84631 3.94884 4.04052 4.20155 4.23971 4.32100 4.42685 4.43898 4.47726 4.52778 4.62648 4.64279 4.66778 4.73286 4.81796 4.85984 4.88983 4.94462 4.97731 5.05658 5.16144 5.29277 5.35088 5.37891 5.41503 5.89139 6.19508 6.25273 6.37718 6.75500 7.05863 7.08618 8.74310 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.001802 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.485073 B =15530.576371 C =16268.252418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.183 3.817 3 N -0.510 5.510 4 C -0.031 4.031 5 C 0.145 3.855 6 N -0.669 5.669 7 C 0.090 3.910 8 H 0.071 0.929 9 C 0.116 3.884 10 N -0.616 5.616 11 C 0.546 3.454 12 O -0.567 6.567 13 C -0.119 4.119 14 S -0.151 6.151 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.274 1.274 23 C 0.098 3.902 24 C -0.092 4.092 25 H 0.103 0.897 26 C -0.140 4.140 27 C -0.058 4.058 28 O -0.213 6.213 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.354 0.646 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.876 -2.900 3.243 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.241 5.241 4 C -0.149 4.149 5 C 0.016 3.984 6 N -0.302 5.302 7 C -0.020 4.020 8 H 0.088 0.912 9 C -0.007 4.007 10 N -0.351 5.351 11 C 0.335 3.665 12 O -0.446 6.446 13 C -0.271 4.271 14 S 0.076 5.924 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.025 4.025 24 C -0.111 4.111 25 H 0.121 0.879 26 C -0.198 4.198 27 C -0.129 4.129 28 O -0.100 6.100 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -32.766 -4.297 4.042 33.292 hybrid contribution 0.473 1.524 -0.621 1.712 sum -32.293 -2.773 3.421 32.592 Atomic orbital electron populations 1.20488 0.78566 1.06221 1.06045 1.27198 0.97992 0.78167 0.99049 1.70293 1.02245 1.31431 1.20105 1.21707 0.92759 0.93455 1.07024 1.20176 0.91968 0.96351 0.89947 1.60272 1.07831 1.45620 1.16512 1.22627 0.89309 0.91748 0.98351 0.91155 1.22284 0.88004 0.92387 0.98039 1.48335 1.03691 1.28640 1.54463 1.19776 0.81443 0.85600 0.79715 1.90684 1.72479 1.36423 1.44976 1.23298 0.98569 1.01075 1.04111 1.85590 0.96075 1.38516 1.72175 1.23231 0.94871 1.12113 1.39137 0.89869 1.26146 0.96648 1.00005 0.96322 1.70197 1.05492 1.36073 1.43018 0.84884 0.78162 0.77090 0.77675 1.17963 1.19880 1.19899 1.22401 0.90980 0.90948 0.98160 1.22358 0.93372 0.97571 0.97826 0.87915 1.21778 0.99889 0.95302 1.02799 1.25321 0.85228 0.96390 1.05942 1.84480 1.17438 1.38220 1.69886 0.87681 0.87450 0.87395 0.88630 0.93228 0.82533 0.90862 0.92211 0.87507 0.87557 0.91964 0.90158 0.90130 0.90701 0.91260 0.92394 0.74501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 71.23 0.75 0.45 16 2 C 0.18 2.77 8.34 88.34 0.74 3.51 16 3 N -0.51 -9.67 11.29 -291.99 -3.30 -12.97 16 4 C -0.03 -0.54 6.62 41.26 0.27 -0.26 16 5 C 0.14 2.24 6.09 85.55 0.52 2.76 16 6 N -0.67 -10.21 6.40 -488.04 -3.12 -13.33 16 7 C 0.09 1.51 2.84 46.38 0.13 1.64 16 8 H 0.07 1.19 7.72 -2.39 -0.02 1.17 16 9 C 0.12 2.85 6.61 86.93 0.57 3.42 16 10 N -0.62 -17.77 3.33 -811.34 -2.70 -20.46 16 11 C 0.55 21.80 7.87 87.66 0.69 22.49 16 12 O -0.57 -27.89 16.12 -3.02 -0.05 -27.94 16 13 C -0.12 -4.97 5.35 71.23 0.38 -4.58 16 14 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 15 C -0.55 -31.49 9.50 67.96 0.65 -30.85 16 16 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 19 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.10 1.93 6.08 86.73 0.53 2.46 16 24 C -0.09 -1.30 2.95 -9.61 -0.03 -1.32 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 26 C -0.14 -1.45 9.13 71.98 0.66 -0.80 16 27 C -0.06 -0.89 12.08 66.93 0.81 -0.08 16 28 O -0.21 -3.55 10.77 -3.73 -0.04 -3.59 16 29 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 0.78 8.09 -2.39 -0.02 0.76 16 34 H 0.35 5.06 8.43 -89.69 -0.76 4.30 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 45 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -81.65 394.00 -0.68 -82.33 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.24 Total: 15.94 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 7.13 Total: 0.06 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -8.83 Total: -102.87 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.09 Total: -31.53 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -81.65 -0.68 -82.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733840057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.924 kcal (2) G-P(sol) polarization free energy of solvation -81.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds