Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.50698 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.36515 * 119.94293 * 95.31151 * 4 3 2 6 6 C 1.40579 * 118.92537 * 180.26824 * 5 4 3 7 7 O 1.22013 * 120.63582 * 179.69815 * 6 5 4 8 8 N 1.35020 * 118.73404 * 359.42563 * 6 5 4 9 9 H 0.97001 * 120.12455 * 180.25206 * 8 6 5 10 10 C 1.36189 * 119.75545 * 0.27376 * 8 6 5 11 11 S 1.76206 * 119.44152 * 180.02562 * 10 8 6 12 12 C 1.80999 * 99.99723 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47214 * 54.99939 * 12 11 10 14 14 C 1.53001 * 109.47004 * 294.99928 * 12 11 10 15 15 C 1.50703 * 109.46891 * 175.00122 * 12 11 10 16 16 O 1.21281 * 119.99988 * 25.00143 * 15 12 11 17 17 N 1.34780 * 120.00050 * 204.99705 * 15 12 11 18 18 C 1.46503 * 119.99766 * 359.97438 * 17 15 12 19 19 C 1.46491 * 120.00140 * 180.02562 * 17 15 12 20 20 C 1.50700 * 109.47400 * 90.00282 * 19 17 15 21 21 H 1.08001 * 119.99531 * 359.97438 * 20 19 17 22 22 C 1.37880 * 120.00345 * 180.02562 * 20 19 17 23 23 N 1.31511 * 119.99972 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99732 * 359.97438 * 22 20 19 25 25 H 1.48512 * 109.46756 * 90.00552 * 24 22 20 26 26 H 1.48497 * 109.46988 * 209.99839 * 24 22 20 27 27 H 1.48497 * 109.47512 * 330.00384 * 24 22 20 28 28 N 1.31912 * 121.11394 * 0.02835 * 10 8 6 29 29 H 1.08994 * 109.47093 * 60.00097 * 1 2 3 30 30 H 1.09003 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46692 * 299.99484 * 1 2 3 32 32 H 1.09007 * 109.47084 * 239.99891 * 2 1 3 33 33 H 1.09005 * 109.47357 * 120.00292 * 2 1 3 34 34 H 1.08993 * 109.47081 * 60.00089 * 3 2 1 35 35 H 1.09001 * 109.46781 * 300.00188 * 3 2 1 36 36 H 1.08002 * 120.53747 * 359.97438 * 5 4 3 37 37 H 1.08999 * 109.47265 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47472 * 300.00083 * 14 12 11 39 39 H 1.09001 * 109.47203 * 60.00378 * 14 12 11 40 40 H 1.09008 * 109.46874 * 89.99747 * 18 17 15 41 41 H 1.08992 * 109.47337 * 209.99834 * 18 17 15 42 42 H 1.08997 * 109.47093 * 330.00403 * 18 17 15 43 43 H 1.08995 * 109.47318 * 210.00285 * 19 17 15 44 44 H 1.09004 * 109.47144 * 329.99866 * 19 17 15 45 45 H 0.97001 * 119.99648 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2279 1.5521 -1.1788 6 6 5.6334 1.5441 -1.1550 7 8 6.2733 1.6347 -2.1900 8 7 6.2620 1.4397 0.0354 9 1 7.2311 1.4358 0.0755 10 6 5.5302 1.3395 1.1796 11 16 6.3589 1.2044 2.7287 12 6 4.9337 1.1061 3.8400 13 1 4.2849 0.2880 3.5273 14 6 4.1554 2.4224 3.7890 15 6 5.4107 0.8588 5.2480 16 8 6.5278 1.1969 5.5780 17 7 4.5960 0.2621 6.1406 18 6 3.2464 -0.1456 5.7422 19 6 5.0595 0.0223 7.5094 20 6 4.7176 1.2104 8.3710 21 1 4.2065 2.0595 7.9417 22 6 5.0581 1.2140 9.7071 23 7 4.7602 2.2511 10.4589 24 14 5.9427 -0.2543 10.4493 25 1 7.4103 -0.0601 10.3303 26 1 5.5750 -0.3811 11.8825 27 1 5.5465 -1.4889 9.7254 28 7 4.2114 1.3418 1.1477 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.6953 1.6389 -2.1143 37 1 3.2974 2.3634 4.4586 38 1 4.8042 3.2405 4.1017 39 1 3.8104 2.6012 2.7706 40 1 3.2734 -1.1658 5.3590 41 1 2.5831 -0.0993 6.6057 42 1 2.8789 0.5247 4.9652 43 1 4.5718 -0.8675 7.9075 44 1 6.1394 -0.1258 7.5066 45 1 5.0001 2.2537 11.3987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007062955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -35.037060 kcal Electronic energy + Delta-G solvation = -27150.026855 eV Core-core repulsion = 23294.350620 eV Total energy + Delta-G solvation = -3855.676236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74897 -39.45959 -38.05890 -36.14886 -35.19012 -33.95022 -33.32118 -32.39300 -31.20644 -28.54329 -28.00531 -26.26716 -25.23298 -24.54047 -23.36824 -22.28446 -21.54045 -19.68597 -18.70248 -18.48064 -17.75925 -17.08623 -16.89192 -16.24170 -16.01034 -15.39875 -15.18506 -14.94697 -14.76717 -14.38331 -14.12550 -13.98715 -13.83345 -13.61964 -13.20596 -13.13675 -12.54645 -12.44862 -12.42834 -12.25009 -12.08526 -11.98619 -11.87689 -11.75909 -11.56611 -11.08510 -11.04792 -10.87903 -10.70041 -10.58893 -10.41260 -10.28829 -10.24494 -9.65422 -9.32870 -9.25571 -8.67228 -8.08780 -7.91991 -6.16944 -4.16957 0.16202 0.54536 1.48061 1.54170 2.58783 2.99617 3.23127 3.24370 3.28911 3.31104 3.59013 3.77304 4.25698 4.31936 4.60109 4.63636 4.69822 4.74845 4.81220 5.02784 5.05627 5.12066 5.16360 5.30933 5.39310 5.41516 5.46805 5.56432 5.67592 5.69299 5.76262 5.78517 5.83723 5.94800 6.01306 6.07027 6.18563 6.23176 6.52439 6.78689 7.09646 7.28318 7.49395 7.57825 7.95072 8.34227 8.61909 8.85719 9.42259 10.96169 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.002875 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.611632 B = 9735.468441 C =10936.308342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.074 4.074 4 C 0.201 3.799 5 C -0.307 4.307 6 C 0.531 3.469 7 O -0.544 6.544 8 N -0.617 5.617 9 H 0.420 0.580 10 C 0.361 3.639 11 S 0.074 5.926 12 C -0.100 4.100 13 H 0.127 0.873 14 C -0.145 4.145 15 C 0.525 3.475 16 O -0.526 6.526 17 N -0.584 5.584 18 C 0.074 3.926 19 C 0.216 3.784 20 C -0.533 4.533 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.895 5.895 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 N -0.540 5.540 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.039 0.961 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -4.772 -20.499 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.112 4.112 4 C 0.077 3.923 5 C -0.335 4.335 6 C 0.330 3.670 7 O -0.424 6.424 8 N -0.259 5.259 9 H 0.260 0.740 10 C -0.010 4.010 11 S 0.309 5.691 12 C -0.233 4.233 13 H 0.144 0.856 14 C -0.203 4.203 15 C 0.308 3.692 16 O -0.403 6.403 17 N -0.315 5.315 18 C -0.069 4.069 19 C 0.096 3.904 20 C -0.571 4.571 21 H 0.094 0.906 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.702 3.298 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 N -0.269 5.269 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.522 -4.565 -19.858 21.111 hybrid contribution -0.139 -0.562 -0.419 0.715 sum -5.662 -5.126 -20.278 21.668 Atomic orbital electron populations 1.21766 0.95026 1.02019 1.02090 1.21454 0.96214 0.94970 1.02790 1.20700 0.87388 0.98824 1.04303 1.21187 0.97052 0.86447 0.87655 1.22504 0.92580 1.17576 1.00798 1.17128 0.89689 0.78124 0.82095 1.90995 1.68489 1.52532 1.30354 1.44733 1.12670 1.61677 1.06826 0.74044 1.25897 0.91578 0.90184 0.93379 1.86679 1.07369 1.86788 0.88221 1.23730 0.98356 1.05715 0.95451 0.85553 1.22062 1.00413 0.93213 1.04657 1.19386 0.85821 0.79052 0.84933 1.90735 1.19890 1.50593 1.79104 1.47726 1.13777 1.57560 1.12477 1.21842 0.84419 0.98989 1.01679 1.19758 0.96226 0.97433 0.77024 1.21280 1.39331 1.02833 0.93676 0.90624 1.24848 0.95143 0.95997 0.96901 1.69887 1.46897 1.29531 1.06950 0.86864 0.80879 0.83309 0.78718 1.19829 1.20986 1.19034 1.68811 1.02828 1.26637 1.28619 0.92644 0.92447 0.92273 0.91837 0.91177 0.89144 0.89626 0.82933 0.90389 0.91101 0.89293 0.93214 0.90017 0.91551 0.94787 0.94347 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 3 C -0.07 -0.50 5.54 -27.88 -0.15 -0.65 16 4 C 0.20 1.88 6.02 -82.69 -0.50 1.39 16 5 C -0.31 -3.21 9.65 -39.32 -0.38 -3.59 16 6 C 0.53 6.66 7.74 -15.27 -0.12 6.54 16 7 O -0.54 -8.62 17.97 4.91 0.09 -8.53 16 8 N -0.62 -6.46 5.32 -14.79 -0.08 -6.54 16 9 H 0.42 3.64 8.82 -40.82 -0.36 3.28 16 10 C 0.36 3.84 7.76 -88.13 -0.68 3.15 16 11 S 0.07 0.88 20.95 -107.50 -2.25 -1.37 16 12 C -0.10 -1.30 1.70 -27.88 -0.05 -1.35 16 13 H 0.13 1.39 6.74 -51.92 -0.35 1.05 16 14 C -0.14 -1.75 8.72 37.16 0.32 -1.43 16 15 C 0.52 9.59 6.79 -10.98 -0.07 9.52 16 16 O -0.53 -11.80 15.71 5.56 0.09 -11.71 16 17 N -0.58 -10.90 2.86 -182.96 -0.52 -11.42 16 18 C 0.07 1.00 9.87 59.85 0.59 1.59 16 19 C 0.22 4.93 4.23 -5.20 -0.02 4.91 16 20 C -0.53 -14.53 9.94 -34.44 -0.34 -14.88 16 21 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 24 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 28 N -0.54 -5.53 6.78 -9.31 -0.06 -5.59 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.08 0.93 6.84 -51.93 -0.36 0.57 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 0.95 5.65 -51.93 -0.29 0.66 16 40 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 41 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 42 H 0.07 0.73 5.17 -51.93 -0.27 0.46 16 43 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 44 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -34.43 383.90 -8.73 -43.16 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.58 Total: 0.29 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.29 Total: 5.83 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.11 Total: -49.48 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.18 Total: -20.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.25 Total: -1.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.43 -8.73 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007062955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.122 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds