Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.50698 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.36515 * 119.94293 * 95.31151 * 4 3 2 6 6 C 1.40579 * 118.92537 * 180.26824 * 5 4 3 7 7 O 1.22013 * 120.63582 * 179.69815 * 6 5 4 8 8 N 1.35020 * 118.73404 * 359.42563 * 6 5 4 9 9 H 0.97001 * 120.12455 * 180.25206 * 8 6 5 10 10 C 1.36189 * 119.75545 * 0.27376 * 8 6 5 11 11 S 1.76206 * 119.44152 * 180.02562 * 10 8 6 12 12 C 1.80999 * 99.99723 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47214 * 54.99939 * 12 11 10 14 14 C 1.53001 * 109.47004 * 294.99928 * 12 11 10 15 15 C 1.50703 * 109.46891 * 175.00122 * 12 11 10 16 16 O 1.21281 * 119.99988 * 25.00143 * 15 12 11 17 17 N 1.34780 * 120.00050 * 204.99705 * 15 12 11 18 18 C 1.46503 * 119.99766 * 359.97438 * 17 15 12 19 19 C 1.46491 * 120.00140 * 180.02562 * 17 15 12 20 20 C 1.50700 * 109.47400 * 90.00282 * 19 17 15 21 21 H 1.08001 * 119.99531 * 359.97438 * 20 19 17 22 22 C 1.37880 * 120.00345 * 180.02562 * 20 19 17 23 23 N 1.31511 * 119.99972 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99732 * 359.97438 * 22 20 19 25 25 H 1.48512 * 109.46756 * 90.00552 * 24 22 20 26 26 H 1.48497 * 109.46988 * 209.99839 * 24 22 20 27 27 H 1.48497 * 109.47512 * 330.00384 * 24 22 20 28 28 N 1.31912 * 121.11394 * 0.02835 * 10 8 6 29 29 H 1.08994 * 109.47093 * 60.00097 * 1 2 3 30 30 H 1.09003 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46692 * 299.99484 * 1 2 3 32 32 H 1.09007 * 109.47084 * 239.99891 * 2 1 3 33 33 H 1.09005 * 109.47357 * 120.00292 * 2 1 3 34 34 H 1.08993 * 109.47081 * 60.00089 * 3 2 1 35 35 H 1.09001 * 109.46781 * 300.00188 * 3 2 1 36 36 H 1.08002 * 120.53747 * 359.97438 * 5 4 3 37 37 H 1.08999 * 109.47265 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47472 * 300.00083 * 14 12 11 39 39 H 1.09001 * 109.47203 * 60.00378 * 14 12 11 40 40 H 1.09008 * 109.46874 * 89.99747 * 18 17 15 41 41 H 1.08992 * 109.47337 * 209.99834 * 18 17 15 42 42 H 1.08997 * 109.47093 * 330.00403 * 18 17 15 43 43 H 1.08995 * 109.47318 * 210.00285 * 19 17 15 44 44 H 1.09004 * 109.47144 * 329.99866 * 19 17 15 45 45 H 0.97001 * 119.99648 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2279 1.5521 -1.1788 6 6 5.6334 1.5441 -1.1550 7 8 6.2733 1.6347 -2.1900 8 7 6.2620 1.4397 0.0354 9 1 7.2311 1.4358 0.0755 10 6 5.5302 1.3395 1.1796 11 16 6.3589 1.2044 2.7287 12 6 4.9337 1.1061 3.8400 13 1 4.2849 0.2880 3.5273 14 6 4.1554 2.4224 3.7890 15 6 5.4107 0.8588 5.2480 16 8 6.5278 1.1969 5.5780 17 7 4.5960 0.2621 6.1406 18 6 3.2464 -0.1456 5.7422 19 6 5.0595 0.0223 7.5094 20 6 4.7176 1.2104 8.3710 21 1 4.2065 2.0595 7.9417 22 6 5.0581 1.2140 9.7071 23 7 4.7602 2.2511 10.4589 24 14 5.9427 -0.2543 10.4493 25 1 7.4103 -0.0601 10.3303 26 1 5.5750 -0.3811 11.8825 27 1 5.5465 -1.4889 9.7254 28 7 4.2114 1.3418 1.1477 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.6953 1.6389 -2.1143 37 1 3.2974 2.3634 4.4586 38 1 4.8042 3.2405 4.1017 39 1 3.8104 2.6012 2.7706 40 1 3.2734 -1.1658 5.3590 41 1 2.5831 -0.0993 6.6057 42 1 2.8789 0.5247 4.9652 43 1 4.5718 -0.8675 7.9075 44 1 6.1394 -0.1258 7.5066 45 1 5.0001 2.2537 11.3987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007062955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -57.629335 kcal Electronic energy + Delta-G solvation = -27151.006530 eV Core-core repulsion = 23294.350620 eV Total energy + Delta-G solvation = -3856.655910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63400 -40.91283 -38.99814 -36.87519 -36.73779 -35.08024 -34.53328 -33.95131 -32.09020 -30.31472 -28.61219 -27.53744 -26.09204 -25.90427 -24.19545 -23.85421 -22.12848 -20.76060 -19.87433 -19.37075 -19.12919 -18.74178 -18.22431 -17.28842 -17.12944 -16.59862 -16.39600 -15.97314 -15.76582 -15.48600 -15.40472 -14.92692 -14.71099 -14.65179 -14.48782 -14.21175 -14.03521 -13.70372 -13.46742 -13.45084 -13.14326 -12.96507 -12.89469 -12.75813 -12.65499 -12.42679 -12.27704 -12.02244 -11.73069 -11.69685 -11.61628 -11.48416 -11.37361 -11.12033 -10.82568 -10.79618 -10.18702 -9.48036 -8.99732 -8.32226 -6.37451 -0.67465 -0.42745 0.54801 0.58149 1.35412 1.39125 1.46830 1.57938 1.72948 2.22128 2.32559 2.38250 3.01441 3.02776 3.37835 3.44918 3.76198 3.98047 4.00005 4.18222 4.22476 4.36004 4.40168 4.50037 4.65468 4.66377 4.75700 4.78463 4.82699 4.87166 4.94206 4.98064 4.98595 5.05051 5.17105 5.26293 5.31231 5.36982 5.40721 5.45241 5.53106 5.53314 6.22220 6.44147 6.52491 6.64871 6.65336 7.13391 7.29197 8.84374 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.002875 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.611632 B = 9735.468441 C =10936.308342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.072 4.072 4 C 0.209 3.791 5 C -0.313 4.313 6 C 0.523 3.477 7 O -0.586 6.586 8 N -0.608 5.608 9 H 0.427 0.573 10 C 0.364 3.636 11 S 0.069 5.931 12 C -0.089 4.089 13 H 0.155 0.845 14 C -0.139 4.139 15 C 0.517 3.483 16 O -0.577 6.577 17 N -0.592 5.592 18 C 0.067 3.933 19 C 0.223 3.777 20 C -0.535 4.535 21 H 0.033 0.967 22 C 0.012 3.988 23 N -0.945 5.945 24 Si 0.944 3.056 25 H -0.278 1.278 26 H -0.278 1.278 27 H -0.235 1.235 28 N -0.537 5.537 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.022 0.978 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -6.657 -21.746 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.110 4.110 4 C 0.084 3.916 5 C -0.340 4.340 6 C 0.323 3.677 7 O -0.470 6.470 8 N -0.250 5.250 9 H 0.268 0.732 10 C -0.008 4.008 11 S 0.305 5.695 12 C -0.221 4.221 13 H 0.173 0.827 14 C -0.197 4.197 15 C 0.303 3.697 16 O -0.458 6.458 17 N -0.323 5.323 18 C -0.075 4.075 19 C 0.100 3.900 20 C -0.574 4.574 21 H 0.051 0.949 22 C -0.186 4.186 23 N -0.585 5.585 24 Si 0.767 3.233 25 H -0.203 1.203 26 H -0.204 1.204 27 H -0.158 1.158 28 N -0.266 5.266 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.183 0.817 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.117 -6.473 -21.121 23.209 hybrid contribution 0.276 0.104 -0.069 0.302 sum -6.842 -6.370 -21.190 23.160 Atomic orbital electron populations 1.21748 0.94177 1.02243 1.02534 1.21422 0.96867 0.94448 1.02366 1.20819 0.85182 0.99385 1.05578 1.21566 0.98318 0.84914 0.86784 1.22629 0.91638 1.17800 1.01943 1.17455 0.90461 0.77913 0.81844 1.90973 1.69367 1.54938 1.31678 1.44630 1.13207 1.60755 1.06397 0.73244 1.25688 0.91761 0.90563 0.92744 1.86821 1.06839 1.87335 0.88542 1.23581 0.99030 1.07112 0.92376 0.82713 1.22047 0.99912 0.91971 1.05812 1.20173 0.85069 0.77707 0.86761 1.90704 1.22150 1.52433 1.80505 1.47803 1.15844 1.57583 1.11033 1.22165 0.81478 1.01599 1.02243 1.19432 0.95546 0.96062 0.78924 1.21537 1.38291 1.03121 0.94416 0.94873 1.25815 0.96050 0.99205 0.97529 1.70043 1.48826 1.32145 1.07457 0.85771 0.78853 0.80506 0.78171 1.20339 1.20361 1.15754 1.68827 1.02497 1.26047 1.29187 0.91955 0.92380 0.92099 0.92050 0.91871 0.88410 0.87881 0.81658 0.90014 0.93062 0.87335 0.89755 0.90832 0.88900 0.92583 0.95981 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.11 -1.09 5.92 30.59 0.18 -0.91 16 3 C -0.07 -0.72 5.54 29.85 0.17 -0.55 16 4 C 0.21 3.33 6.02 41.97 0.25 3.58 16 5 C -0.31 -5.92 9.65 22.44 0.22 -5.70 16 6 C 0.52 12.60 7.74 84.77 0.66 13.25 16 7 O -0.59 -18.52 17.97 -5.36 -0.10 -18.61 16 8 N -0.61 -12.05 5.32 -318.66 -1.69 -13.75 16 9 H 0.43 7.12 8.82 -92.71 -0.82 6.31 16 10 C 0.36 7.05 7.76 179.48 1.39 8.45 16 11 S 0.07 1.56 20.95 -56.49 -1.18 0.38 16 12 C -0.09 -2.15 1.70 29.85 0.05 -2.10 16 13 H 0.16 2.86 6.74 -2.40 -0.02 2.84 16 14 C -0.14 -3.13 8.72 71.98 0.63 -2.50 16 15 C 0.52 18.57 6.79 87.66 0.60 19.16 16 16 O -0.58 -26.31 15.71 -3.03 -0.05 -26.35 16 17 N -0.59 -21.38 2.86 -851.14 -2.43 -23.81 16 18 C 0.07 1.60 9.87 127.77 1.26 2.86 16 19 C 0.22 10.01 4.23 85.63 0.36 10.38 16 20 C -0.54 -29.78 9.94 25.60 0.25 -29.53 16 21 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 22 C 0.01 0.69 5.47 84.66 0.46 1.16 16 23 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 24 Si 0.94 42.54 27.47 68.60 1.88 44.43 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.23 -9.31 6.54 99.48 0.65 -8.66 16 28 N -0.54 -9.50 6.78 -183.38 -1.24 -10.75 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.73 8.04 -2.39 -0.02 0.71 16 36 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.08 1.78 6.84 -2.39 -0.02 1.77 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 2.02 5.65 -2.39 -0.01 2.00 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 42 H 0.09 1.71 5.17 -2.39 -0.01 1.70 16 43 H 0.06 2.28 7.13 -2.39 -0.02 2.27 16 44 H 0.02 1.07 6.85 -2.38 -0.02 1.06 16 45 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -77.96 383.90 2.82 -75.14 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.14 Total: 13.94 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 7.19 Total: 17.09 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.07 Total: -106.00 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.14 Total: -44.97 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.43 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.18 Total: 0.38 kcal Total: -77.96 2.82 -75.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007062955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.507 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds