Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 C 1.50699 * 109.46963 * 119.99868 * 2 1 3 5 5 N 1.31128 * 126.55154 * 119.99648 * 4 2 1 6 6 C 1.34494 * 105.61364 * 179.97438 * 5 4 2 7 7 C 1.50702 * 126.28475 * 179.97438 * 6 5 4 8 8 N 1.46498 * 110.43869 * 305.70492 * 7 6 5 9 9 C 1.34777 * 119.99828 * 59.02088 * 8 7 6 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 7 12 12 S 1.81000 * 109.47389 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99715 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31634 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46661 * 60.00586 * 17 15 13 19 19 H 1.48501 * 109.47391 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47355 * 300.00441 * 17 15 13 21 21 C 1.54889 * 110.48596 * 68.24578 * 7 6 5 22 22 C 1.55237 * 102.58897 * 156.67446 * 21 7 6 23 23 C 1.54271 * 104.23096 * 322.08556 * 22 21 7 24 24 C 1.53873 * 106.59785 * 23.61014 * 23 22 21 25 25 N 1.29943 * 107.42342 * 0.24732 * 6 5 4 26 26 O 1.21293 * 110.25440 * 359.57520 * 25 6 5 27 27 H 1.09004 * 109.47186 * 300.00380 * 1 2 3 28 28 H 1.09005 * 109.47113 * 59.99933 * 1 2 3 29 29 H 1.09002 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46746 * 239.99817 * 2 1 3 31 31 H 1.09003 * 109.47095 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47204 * 300.00012 * 3 2 1 33 33 H 1.08995 * 109.47235 * 59.99568 * 3 2 1 34 34 H 0.97001 * 120.00384 * 239.30535 * 8 7 6 35 35 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 36 36 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 37 37 H 0.96991 * 119.99795 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.75881 * 275.06959 * 21 7 6 39 39 H 1.09001 * 110.75256 * 38.43851 * 21 7 6 40 40 H 1.09002 * 110.47091 * 203.39545 * 22 21 7 41 41 H 1.08998 * 110.47177 * 80.76979 * 22 21 7 42 42 H 1.09005 * 110.03142 * 264.32429 * 23 22 21 43 43 H 1.09002 * 110.07686 * 142.91632 * 23 22 21 44 44 H 1.09003 * 110.03455 * 240.71142 * 24 23 22 45 45 H 1.09003 * 110.07164 * 119.30661 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7891 -1.7808 1.2600 6 6 2.9817 -2.0522 2.5631 7 6 3.7884 -3.1936 3.1267 8 7 3.3242 -4.4691 2.5756 9 6 3.3485 -4.6767 1.2442 10 8 3.7595 -3.8094 0.5026 11 6 2.8652 -5.9865 0.6767 12 16 3.0240 -5.9583 -1.1261 13 6 2.4075 -7.5630 -1.5126 14 1 2.0771 -8.2197 -0.7214 15 6 2.3454 -7.9828 -2.8342 16 7 2.7476 -7.1824 -3.7986 17 14 1.6925 -9.6843 -3.2440 18 1 0.2929 -9.8065 -2.7626 19 1 1.7302 -9.8882 -4.7144 20 1 2.5355 -10.7111 -2.5805 21 6 5.2950 -2.9911 2.8299 22 6 5.9751 -3.8410 3.9366 23 6 5.0919 -3.6190 5.1818 24 6 3.7016 -3.2073 4.6668 25 7 2.3397 -1.1528 3.2468 26 8 1.7919 -0.3695 2.5002 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.9954 -5.1628 3.1686 35 1 3.4655 -6.8013 1.0813 36 1 1.8200 -6.1361 0.9475 37 1 2.7046 -7.4759 -4.7221 38 1 5.5477 -3.3688 1.8391 39 1 5.5698 -1.9406 2.9257 40 1 6.9894 -3.4866 4.1202 41 1 5.9828 -4.8946 3.6575 42 1 5.5111 -2.8252 5.8002 43 1 5.0186 -4.5414 5.7579 44 1 3.4459 -2.2138 5.0353 45 1 2.9531 -3.9299 4.9922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175172257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = 4.796902 kcal Electronic energy + Delta-G solvation = -27926.056148 eV Core-core repulsion = 24072.107242 eV Total energy + Delta-G solvation = -3853.948905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.60615 -41.27457 -38.78164 -37.26130 -36.24925 -34.59947 -34.49033 -32.63244 -31.06648 -29.85387 -28.70711 -28.13725 -27.61509 -25.24219 -24.91518 -22.69098 -22.39373 -21.07400 -20.32298 -19.77754 -19.11032 -18.58062 -17.72930 -17.26476 -16.87552 -16.82628 -16.68504 -16.12763 -15.99436 -15.60530 -15.22511 -14.72201 -14.46774 -14.32393 -14.27594 -13.74567 -13.67286 -13.16032 -13.10877 -13.07886 -13.02680 -12.87251 -12.73689 -12.57792 -12.54555 -12.40406 -12.24633 -12.16486 -12.03492 -11.96329 -11.82229 -11.69532 -11.38349 -11.12613 -10.91476 -10.62301 -10.25516 -10.22738 -8.63626 -8.33941 -6.10894 0.10323 1.15247 1.30702 1.42830 1.47271 1.57725 1.71613 1.83109 2.24570 2.29843 2.56360 2.85595 2.99776 3.33696 3.43035 3.51939 3.85619 3.91992 3.97231 4.00411 4.15047 4.27984 4.31548 4.34584 4.39280 4.43489 4.49043 4.61088 4.68006 4.74661 4.77289 4.82324 4.86934 4.92357 5.00984 5.03042 5.07890 5.16592 5.21645 5.27009 5.29154 5.38871 5.41296 5.49349 6.19639 6.51271 7.07151 7.17501 7.35361 8.74860 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003678 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.976966 B = 7611.895698 C = 9660.201435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.140 4.140 4 C 0.174 3.826 5 N -0.467 5.467 6 C 0.155 3.845 7 C 0.262 3.738 8 N -0.707 5.707 9 C 0.521 3.479 10 O -0.501 6.501 11 C -0.128 4.128 12 S -0.136 6.136 13 C -0.551 4.551 14 H 0.079 0.921 15 C 0.017 3.983 16 N -0.910 5.910 17 Si 0.995 3.005 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.115 4.115 25 N -0.391 5.391 26 O 0.075 5.925 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.271 0.729 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 13.252 18.149 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 C -0.198 4.198 4 C -0.047 4.047 5 N -0.198 5.198 6 C -0.119 4.119 7 C 0.173 3.827 8 N -0.365 5.365 9 C 0.306 3.694 10 O -0.373 6.373 11 C -0.279 4.279 12 S 0.091 5.909 13 C -0.699 4.699 14 H 0.097 0.903 15 C -0.188 4.188 16 N -0.546 5.546 17 Si 0.817 3.183 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.154 4.154 25 N -0.099 5.099 26 O 0.016 5.984 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.255 0.745 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.099 14.383 17.435 22.603 hybrid contribution -1.027 -2.127 0.133 2.366 sum -0.928 12.256 17.568 21.441 Atomic orbital electron populations 1.21890 0.90769 1.02449 1.05039 1.20069 0.98088 0.96703 0.87478 1.21876 1.01180 0.91764 1.05006 1.29819 0.93731 0.92074 0.89047 1.72549 1.15801 1.12420 1.19045 1.26421 0.99838 0.99468 0.86192 1.19344 0.91374 0.77833 0.94151 1.45782 1.67645 1.16553 1.06500 1.20062 0.78519 0.88143 0.82703 1.90805 1.43638 1.44108 1.58730 1.23350 1.04770 0.98590 1.01183 1.85512 1.84696 1.22520 0.98137 1.23188 1.49389 1.01335 0.95965 0.90323 1.26069 0.95008 1.02850 0.94880 1.70170 1.45581 1.38285 1.00588 0.85056 0.79037 0.76858 0.77369 1.18813 1.20220 1.18699 1.22819 0.91859 1.00784 1.00465 1.22406 0.99588 0.99714 0.93600 1.22126 0.92400 1.03206 0.97229 1.22453 1.00437 1.04123 0.88349 1.74505 1.12832 1.04714 1.17837 1.85179 1.54537 1.42701 1.15980 0.90504 0.88047 0.93844 0.88027 0.92988 0.88107 0.90609 0.74541 0.87588 0.88592 0.91990 0.92413 0.91391 0.89721 0.91254 0.89947 0.88990 0.89726 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.18 71.98 0.66 -1.87 16 2 C 0.00 -0.07 3.39 -11.54 -0.04 -0.10 16 3 C -0.14 -2.17 9.18 71.98 0.66 -1.51 16 4 C 0.17 5.16 7.02 88.38 0.62 5.78 16 5 N -0.47 -17.22 8.61 -303.22 -2.61 -19.83 16 6 C 0.15 5.02 6.52 138.46 0.90 5.93 16 7 C 0.26 7.09 0.76 3.93 0.00 7.09 16 8 N -0.71 -20.07 5.10 -421.43 -2.15 -22.22 16 9 C 0.52 20.14 7.12 87.66 0.62 20.76 16 10 O -0.50 -23.24 11.54 -3.04 -0.04 -23.28 16 11 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 12 S -0.14 -7.63 20.57 -56.49 -1.16 -8.79 16 13 C -0.55 -31.91 9.50 67.96 0.65 -31.26 16 14 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 15 C 0.02 0.97 5.49 84.86 0.47 1.44 16 16 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 17 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 C -0.12 -3.26 5.73 32.01 0.18 -3.08 16 22 C -0.12 -2.17 6.80 31.79 0.22 -1.96 16 23 C -0.11 -1.59 6.80 31.32 0.21 -1.38 16 24 C -0.12 -2.15 5.94 31.32 0.19 -1.97 16 25 N -0.39 -11.70 10.90 -60.35 -0.66 -12.36 16 26 O 0.08 2.13 11.31 74.83 0.85 2.97 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.42 8.82 8.28 -92.71 -0.77 8.05 16 35 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 36 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.27 15.54 8.31 -92.72 -0.77 14.77 16 38 H 0.06 2.02 6.47 -2.39 -0.02 2.00 16 39 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.69 7.01 -2.39 -0.02 1.68 16 45 H 0.09 1.43 7.75 -2.39 -0.02 1.41 16 Total: -1.00 -79.71 381.23 2.56 -77.14 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.24 Total: 23.25 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.78 Total: -6.98 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -5.13 Total: -110.25 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.81 Total: -20.30 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.16 Total: -8.79 kcal Total: -79.71 2.56 -77.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175172257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.942 kcal (2) G-P(sol) polarization free energy of solvation -79.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds