Wall clock time and date at job start Sat Apr 11 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21606 * 119.99522 * 359.97438 * 14 13 3 16 16 C 1.47370 * 120.00170 * 180.02562 * 14 13 3 17 17 C 1.39856 * 120.09359 * 359.97438 * 16 14 13 18 18 C 1.36531 * 120.07915 * 180.02562 * 17 16 14 19 19 N 1.48019 * 119.86442 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99990 * 359.97438 * 19 18 17 21 21 O 1.21804 * 120.00298 * 180.02562 * 19 18 17 22 22 C 1.39297 * 120.26821 * 359.97438 * 18 17 16 23 23 N 1.39057 * 119.90712 * 179.97438 * 22 18 17 24 24 C 1.46903 * 110.99972 * 120.00070 * 23 22 18 25 25 C 1.46897 * 111.00053 * 243.95849 * 23 22 18 26 26 C 1.39073 * 120.18817 * 359.97438 * 22 18 17 27 27 C 1.38014 * 119.91330 * 359.76612 * 26 22 18 28 28 F 1.35102 * 120.13157 * 180.23405 * 27 26 22 29 29 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 30 30 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 32 32 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 33 33 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 36 36 H 1.08004 * 119.95670 * 359.97438 * 17 16 14 37 37 H 1.08998 * 109.47017 * 59.99760 * 24 23 22 38 38 H 1.09000 * 109.47134 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.46784 * 300.00436 * 24 23 22 40 40 H 1.08998 * 109.47476 * 59.99851 * 25 23 22 41 41 H 1.09006 * 109.46912 * 179.97438 * 25 23 22 42 42 H 1.09005 * 109.46871 * 299.99547 * 25 23 22 43 43 H 1.07997 * 120.04335 * 179.97438 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3413 2.6325 0.4317 16 6 0.0456 3.3237 2.6261 17 6 0.9374 3.3619 3.7028 18 6 0.5759 3.9724 4.8693 19 7 1.5233 4.0096 6.0060 20 8 2.6225 3.4958 5.8998 21 8 1.2033 4.5532 7.0480 22 6 -0.6807 4.5604 4.9940 23 7 -1.0412 5.1798 6.1857 24 6 -1.3480 6.6000 5.9691 25 6 -2.1720 4.4873 6.8178 26 6 -1.5758 4.5299 3.9300 27 6 -1.2164 3.9195 2.7456 28 9 -2.0807 3.8914 1.7076 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8295 -0.0694 -2.9455 35 1 2.2720 2.1230 1.9978 36 1 1.9128 2.9072 3.6116 37 1 -2.1748 6.6897 5.2645 38 1 -1.6264 7.0602 6.9171 39 1 -0.4700 7.1038 5.5649 40 1 -1.8931 3.4553 7.0307 41 1 -2.4331 4.9920 7.7480 42 1 -3.0287 4.5005 6.1440 43 1 -2.5496 4.9861 4.0294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279336377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:03 Heat of formation + Delta-G solvation = -50.764225 kcal Electronic energy + Delta-G solvation = -30227.925941 eV Core-core repulsion = 25805.354549 eV Total energy + Delta-G solvation = -4422.571393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.40505 -43.27668 -41.55107 -40.54682 -38.04049 -37.33042 -36.99884 -34.47156 -33.17272 -33.00835 -31.63646 -28.99319 -28.61773 -27.48473 -26.69782 -25.16033 -23.81532 -23.46019 -22.30010 -21.36575 -20.51514 -19.77188 -19.16084 -18.67663 -18.55534 -18.16471 -17.52081 -17.29500 -17.12131 -16.51854 -16.26479 -16.09953 -16.02967 -15.78740 -15.34173 -14.85169 -14.64754 -14.53428 -14.12724 -13.70754 -13.61441 -13.50388 -13.21271 -13.15259 -12.92231 -12.89355 -12.72651 -12.70818 -12.53791 -12.27980 -12.19527 -12.11094 -12.10678 -11.63889 -11.10075 -11.03317 -10.77040 -10.57312 -10.54249 -9.78913 -9.74596 -8.19275 -6.36372 -1.42162 -0.88569 0.07634 0.30239 1.34297 1.43222 1.45521 1.56625 2.09766 2.18035 2.26740 2.43565 2.55562 2.96732 3.10864 3.19690 3.43844 3.55751 3.92839 4.05606 4.12909 4.25340 4.31735 4.36685 4.45669 4.52496 4.58791 4.64954 4.70770 4.82079 4.97820 4.99299 5.01642 5.21099 5.26527 5.37489 5.42630 5.55776 5.66501 5.72534 5.79900 5.82584 6.11711 6.62818 6.67986 6.73933 7.20252 7.38024 8.86175 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003370 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.439950 B = 8307.209102 C = 9630.649648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.694 5.694 14 C 0.543 3.457 15 O -0.561 6.561 16 C -0.177 4.177 17 C 0.015 3.985 18 C -0.055 4.055 19 N 0.032 4.968 20 O -0.227 6.227 21 O -0.084 6.084 22 C 0.219 3.781 23 N -0.519 5.519 24 C 0.023 3.977 25 C 0.025 3.975 26 C -0.177 4.177 27 C 0.215 3.785 28 F -0.107 7.107 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.171 0.829 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 10.543 18.728 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.342 5.342 14 C 0.329 3.671 15 O -0.442 6.442 16 C -0.182 4.182 17 C -0.005 4.005 18 C -0.140 4.140 19 N 0.553 4.447 20 O -0.423 6.423 21 O -0.321 6.321 22 C 0.122 3.878 23 N -0.241 5.241 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.198 4.198 27 C 0.193 3.807 28 F -0.084 7.084 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.188 0.812 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.073 0.927 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.712 10.280 17.532 23.972 hybrid contribution 0.830 -0.266 -0.855 1.221 sum -11.882 10.014 16.677 22.794 Atomic orbital electron populations 1.21686 0.96924 0.99341 1.00215 1.21807 0.93772 0.98911 1.01637 1.18485 0.93900 0.89315 0.80669 0.97553 1.21580 0.91221 1.39075 1.06980 0.91035 1.25708 1.03149 0.94270 0.94988 1.70036 1.36944 1.38091 1.09921 0.85359 0.79296 0.77883 0.78203 1.18593 1.20407 1.20965 1.46257 1.14704 1.55129 1.18152 1.18016 0.82876 0.79375 0.86853 1.90837 1.51981 1.60733 1.40646 1.20029 0.95507 1.06959 0.95753 1.20724 1.00154 0.91280 0.88349 1.20744 0.92220 1.12176 0.88848 1.43370 1.00857 0.98468 1.01988 1.94603 1.08720 1.49501 1.89496 1.94547 1.81208 1.40505 1.15815 1.18502 0.88976 0.89259 0.91111 1.59744 1.41543 1.04759 1.18026 1.22676 1.01192 0.84127 1.04197 1.22654 0.89286 0.99448 1.00599 1.21899 1.03723 1.04003 0.90200 1.17974 0.85598 0.92335 0.84771 1.91658 1.67359 1.93047 1.56377 0.95203 0.93423 0.94096 0.90589 0.93942 0.92499 0.76197 0.81216 0.92619 0.87513 0.91811 0.91858 0.87496 0.92664 0.78533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 13.94 2.24 44.25 0.10 14.03 16 4 H 0.01 0.39 7.58 -2.38 -0.02 0.37 16 5 C -0.55 -28.59 8.73 25.60 0.22 -28.37 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -51.14 11.28 21.45 0.24 -50.90 16 9 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 N -0.69 -27.93 4.97 -449.44 -2.23 -30.16 16 14 C 0.54 20.88 6.32 86.65 0.55 21.43 16 15 O -0.56 -25.65 12.47 -4.05 -0.05 -25.70 16 16 C -0.18 -5.06 5.88 -20.04 -0.12 -5.17 16 17 C 0.02 0.38 8.99 22.26 0.20 0.58 16 18 C -0.05 -1.26 6.83 36.23 0.25 -1.02 16 19 N 0.03 0.86 4.45 -46.80 -0.21 0.65 16 20 O -0.23 -6.85 18.41 18.88 0.35 -6.51 16 21 O -0.08 -2.16 17.08 18.88 0.32 -1.83 16 22 C 0.22 3.84 4.71 38.45 0.18 4.02 16 23 N -0.52 -7.10 2.82 -745.15 -2.10 -9.20 16 24 C 0.02 0.20 9.34 127.69 1.19 1.39 16 25 C 0.02 0.22 9.38 127.69 1.20 1.42 16 26 C -0.18 -2.80 8.51 22.42 0.19 -2.61 16 27 C 0.22 5.20 7.28 22.66 0.17 5.36 16 28 F -0.11 -3.08 15.54 44.97 0.70 -2.38 16 29 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.72 5.65 -2.38 -0.01 1.71 16 32 H 0.08 4.10 5.94 -2.38 -0.01 4.08 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.27 14.12 8.31 -92.70 -0.77 13.34 16 35 H 0.40 13.88 6.55 -92.71 -0.61 13.27 16 36 H 0.17 4.13 5.89 -2.91 -0.02 4.11 16 37 H 0.06 0.30 7.10 -2.39 -0.02 0.28 16 38 H 0.11 0.55 8.12 -2.39 -0.02 0.53 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.56 8.12 -2.38 -0.02 0.54 16 42 H 0.05 0.31 7.32 -2.38 -0.02 0.29 16 43 H 0.20 1.67 6.99 -2.91 -0.02 1.65 16 Total: -1.00 -67.69 361.05 4.86 -62.83 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.47 Total: 17.45 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.35 Total: 1.96 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -4.30 Total: -89.62 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: 0.62 Total: -34.04 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.70 Total: -2.38 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -67.69 4.86 -62.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279336377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.065 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds