Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46913 * 2 1 4 4 H 1.09000 * 109.47170 * 54.99838 * 3 2 1 5 5 C 1.50696 * 109.47121 * 174.99866 * 3 2 1 6 6 H 1.07998 * 119.99992 * 120.00180 * 5 3 2 7 7 C 1.37876 * 119.99966 * 299.99686 * 5 3 2 8 8 N 1.31517 * 120.00248 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00102 * 0.02562 * 7 5 3 10 10 H 1.48509 * 109.46832 * 89.99910 * 9 7 5 11 11 H 1.48495 * 109.47200 * 209.99537 * 9 7 5 12 12 H 1.48497 * 109.47120 * 330.00146 * 9 7 5 13 13 N 1.46498 * 109.46908 * 294.99712 * 3 2 1 14 14 C 1.34785 * 119.99885 * 85.00320 * 13 3 2 15 15 O 1.21606 * 119.99906 * 359.97438 * 14 13 3 16 16 C 1.47373 * 119.99833 * 179.97438 * 14 13 3 17 17 C 1.39855 * 120.09116 * 359.97438 * 16 14 13 18 18 C 1.36530 * 120.07800 * 180.02562 * 17 16 14 19 19 N 1.48024 * 119.86564 * 179.97438 * 18 17 16 20 20 O 1.21795 * 120.00076 * 0.02562 * 19 18 17 21 21 O 1.21802 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.39303 * 120.26962 * 0.02562 * 18 17 16 23 23 N 1.39053 * 119.90572 * 180.02562 * 22 18 17 24 24 C 1.46899 * 110.99902 * 119.97625 * 23 22 18 25 25 C 1.46903 * 110.99703 * 243.92378 * 23 22 18 26 26 C 1.39078 * 120.18001 * 359.97438 * 22 18 17 27 27 C 1.38000 * 119.92176 * 0.02562 * 26 22 18 28 28 F 1.35097 * 120.13337 * 179.97438 * 27 26 22 29 29 H 1.08997 * 109.47669 * 299.99907 * 1 2 3 30 30 H 1.08999 * 109.46881 * 60.00481 * 1 2 3 31 31 H 1.09007 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47471 * 239.99858 * 2 1 3 33 33 H 1.08999 * 109.46881 * 119.99519 * 2 1 3 34 34 H 0.96997 * 119.99915 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00077 * 264.99657 * 13 3 2 36 36 H 1.08001 * 119.96254 * 359.74086 * 17 16 14 37 37 H 1.09002 * 109.47352 * 59.99767 * 24 23 22 38 38 H 1.09009 * 109.46826 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.47096 * 299.99088 * 24 23 22 40 40 H 1.09005 * 109.47346 * 59.99924 * 25 23 22 41 41 H 1.08995 * 109.47291 * 180.02562 * 25 23 22 42 42 H 1.09005 * 109.47067 * 300.00829 * 25 23 22 43 43 H 1.08000 * 120.03703 * 180.02562 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8797 1.3360 9 14 3.0962 0.1090 2.5702 10 1 2.8755 -1.3272 2.2634 11 1 3.7935 0.2349 3.8752 12 1 1.7875 0.8073 2.6387 13 7 1.6524 2.0974 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3418 2.6318 -0.4320 16 6 0.0454 3.3236 -2.6261 17 6 0.9375 3.3626 -3.7025 18 6 0.5764 3.9739 -4.8687 19 7 1.5245 4.0129 -6.0048 20 8 2.6240 3.4999 -5.8982 21 8 1.2052 4.5581 -7.0461 22 6 -0.6802 4.5620 -4.9934 23 7 -1.0403 5.1822 -6.1848 24 6 -2.2286 4.5475 -6.7704 25 6 -1.2569 6.6213 -5.9846 26 6 -1.5760 4.5297 -3.9300 27 6 -1.2190 3.9139 -2.7478 28 9 -2.0856 3.8804 -1.7119 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8769 0.4820 2.1130 35 1 2.2719 2.1231 -1.9978 36 1 1.9149 2.9127 -3.6096 37 1 -3.0619 4.6220 -6.0718 38 1 -2.4887 5.0522 -7.7010 39 1 -2.0171 3.4976 -6.9731 40 1 -0.3389 7.0791 -5.6158 41 1 -1.5377 7.0817 -6.9318 42 1 -2.0550 6.7709 -5.2574 43 1 -2.5498 4.9860 -4.0294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279336380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -24.758222 kcal Electronic energy + Delta-G solvation = -30308.275502 eV Core-core repulsion = 25886.831815 eV Total energy + Delta-G solvation = -4421.443688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.39504 -42.25499 -40.53111 -39.40966 -37.14080 -36.28971 -35.51310 -32.73308 -32.05715 -31.94893 -30.61609 -28.18361 -27.66170 -26.52487 -25.80715 -23.26149 -22.73291 -22.48954 -21.22025 -19.95071 -19.33699 -18.71932 -18.14597 -17.51507 -17.43575 -17.16716 -16.27991 -16.23682 -15.71327 -15.52996 -15.43326 -15.22776 -14.75761 -14.65082 -14.26880 -13.80087 -13.48063 -13.17257 -13.04752 -12.87078 -12.72406 -12.39411 -12.25500 -12.21650 -12.03314 -11.88741 -11.43702 -11.21895 -11.19410 -11.01737 -10.99099 -10.72653 -10.02321 -9.91342 -9.80310 -9.54933 -9.45171 -9.33297 -9.17637 -8.84564 -8.29352 -6.27328 -4.31403 -0.44878 0.04420 1.09112 1.30466 2.35194 2.93518 3.18037 3.30399 3.32457 3.35484 3.39992 3.50277 3.80319 4.13236 4.24838 4.31599 4.54696 4.69137 4.71055 4.73942 4.96009 4.97324 5.05368 5.07896 5.16041 5.36558 5.37411 5.39256 5.71586 5.85123 5.92450 6.05979 6.15075 6.25481 6.49136 6.53416 6.58665 6.69143 6.82200 7.03735 7.15109 7.36813 7.72937 7.92720 8.33584 8.52646 8.72353 9.31542 10.84409 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.003385 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.600752 B = 8269.999057 C = 9417.006835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.053 0.947 5 C -0.540 4.540 6 H 0.082 0.918 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.686 5.686 14 C 0.545 3.455 15 O -0.525 6.525 16 C -0.162 4.162 17 C 0.007 3.993 18 C -0.046 4.046 19 N 0.030 4.970 20 O -0.184 6.184 21 O -0.102 6.102 22 C 0.200 3.800 23 N -0.502 5.502 24 C 0.027 3.973 25 C 0.028 3.972 26 C -0.202 4.202 27 C 0.218 3.782 28 F -0.094 7.094 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.269 0.731 35 H 0.396 0.604 36 H 0.172 0.828 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 8.455 -15.061 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.141 3.859 4 H 0.071 0.929 5 C -0.578 4.578 6 H 0.100 0.900 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.711 3.289 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.185 1.185 13 N -0.335 5.335 14 C 0.329 3.671 15 O -0.403 6.403 16 C -0.167 4.167 17 C -0.013 4.013 18 C -0.130 4.130 19 N 0.553 4.447 20 O -0.389 6.389 21 O -0.331 6.331 22 C 0.103 3.897 23 N -0.223 5.223 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.224 4.224 27 C 0.196 3.804 28 F -0.071 7.071 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.189 0.811 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.574 8.243 -13.944 23.175 hybrid contribution -0.645 -0.402 0.837 1.131 sum -17.220 7.842 -13.107 23.017 Atomic orbital electron populations 1.21886 0.96935 0.99267 1.02128 1.22308 0.94331 0.99722 1.01491 1.19269 0.96037 0.88596 0.82044 0.92891 1.21002 0.88265 1.40377 1.08157 0.89953 1.24816 0.94874 0.95025 0.97604 1.69860 1.08660 1.44075 1.29776 0.86926 0.80942 0.80023 0.81001 1.20126 1.22035 1.18463 1.46177 1.13948 1.54814 1.18519 1.17550 0.83646 0.80005 0.85914 1.90857 1.51161 1.59434 1.38876 1.20438 0.94003 1.05240 0.97065 1.20886 1.00502 0.91410 0.88537 1.20688 0.91739 1.10921 0.89675 1.43221 1.00863 0.98901 1.01694 1.94603 1.07563 1.47798 1.88973 1.94579 1.81484 1.41511 1.15543 1.18349 0.90079 0.91192 0.90096 1.59645 1.37767 1.04217 1.20643 1.22553 0.88748 1.00686 0.99922 1.22538 1.01576 0.85104 1.02537 1.21669 1.02860 1.05620 0.92242 1.17748 0.86340 0.92164 0.84160 1.91682 1.66961 1.92891 1.55587 0.92714 0.93250 0.94725 0.92040 0.92428 0.92140 0.76955 0.81092 0.94488 0.89416 0.90757 0.90733 0.89395 0.94489 0.82201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.51 37.16 0.32 -2.47 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.12 16 3 C 0.24 5.50 1.83 -69.08 -0.13 5.37 16 4 H 0.05 1.32 6.64 -51.93 -0.34 0.98 16 5 C -0.54 -14.09 9.31 -34.44 -0.32 -14.41 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 9 Si 0.88 21.12 24.41 -169.99 -4.15 16.97 16 10 H -0.27 -6.38 6.83 56.52 0.39 -5.99 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 13 N -0.69 -12.79 4.97 -56.03 -0.28 -13.07 16 14 C 0.54 9.62 6.33 -12.54 -0.08 9.54 16 15 O -0.52 -10.79 12.46 5.27 0.07 -10.73 16 16 C -0.16 -2.22 5.88 -104.89 -0.62 -2.83 16 17 C 0.01 0.08 8.99 -39.59 -0.36 -0.27 16 18 C -0.05 -0.55 6.83 -80.16 -0.55 -1.09 16 19 N 0.03 0.41 4.45 33.86 0.15 0.57 16 20 O -0.18 -2.78 18.41 -29.46 -0.54 -3.32 16 21 O -0.10 -1.39 17.08 -29.46 -0.50 -1.89 16 22 C 0.20 1.97 4.71 -83.88 -0.40 1.58 16 23 N -0.50 -4.21 2.82 -186.87 -0.53 -4.74 16 24 C 0.03 0.16 9.33 60.06 0.56 0.72 16 25 C 0.03 0.18 9.38 60.07 0.56 0.74 16 26 C -0.20 -1.83 8.51 -39.36 -0.34 -2.17 16 27 C 0.22 2.64 7.28 -38.98 -0.28 2.35 16 28 F -0.09 -1.31 15.54 2.25 0.04 -1.27 16 29 H 0.05 1.11 7.84 -51.93 -0.41 0.71 16 30 H 0.05 0.92 5.64 -51.93 -0.29 0.63 16 31 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 1.24 8.14 -51.94 -0.42 0.82 16 33 H 0.06 1.30 3.21 -51.93 -0.17 1.13 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.40 6.48 6.55 -40.82 -0.27 6.22 16 36 H 0.17 2.00 5.89 -52.49 -0.31 1.70 16 37 H 0.04 0.18 7.09 -51.93 -0.37 -0.19 16 38 H 0.09 0.40 8.12 -51.92 -0.42 -0.03 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.04 0.19 7.32 -51.93 -0.38 -0.19 16 43 H 0.16 1.02 6.99 -52.49 -0.37 0.65 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.36 354.30 -6.53 -37.89 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.04 Total: 3.18 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.85 Total: -3.94 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.12 Total: -42.23 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.98 Total: -15.94 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.15 Total: 16.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.36 -6.53 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279336380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.130 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds