Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30260 * 125.61608 * 2 1 4 4 C 1.34480 * 108.69643 * 180.14886 * 3 2 1 5 5 C 1.50697 * 126.16491 * 179.82733 * 4 3 2 6 6 N 1.46901 * 109.47267 * 274.68919 * 5 4 3 7 7 C 1.46899 * 111.00150 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.29049 * 34.30138 * 7 6 5 9 9 C 1.54007 * 110.32724 * 272.16657 * 7 6 5 10 10 N 1.47492 * 107.08222 * 239.69959 * 9 7 6 11 11 C 1.34775 * 127.03289 * 205.41196 * 10 9 7 12 12 O 1.21285 * 119.99804 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00003 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.47120 * 179.97438 * 13 11 10 15 15 C 1.76206 * 99.99961 * 179.97438 * 14 13 11 16 16 H 1.08007 * 120.00004 * 0.02562 * 15 14 13 17 17 C 1.38791 * 119.99778 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00262 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99735 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46992 * 60.00183 * 19 17 15 21 21 H 1.48501 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47149 * 299.99795 * 19 17 15 23 23 C 1.48117 * 105.93176 * 25.44565 * 10 9 7 24 24 C 1.54610 * 110.41275 * 156.49369 * 7 6 5 25 25 H 1.09004 * 110.74460 * 215.42740 * 24 7 6 26 26 C 1.53007 * 110.74151 * 338.75295 * 24 7 6 27 27 C 1.34329 * 107.66940 * 359.56582 * 4 3 2 28 28 O 1.33960 * 125.61909 * 179.66265 * 2 1 3 29 29 H 1.08999 * 109.47145 * 180.31407 * 1 2 3 30 30 H 1.08996 * 109.47019 * 300.31007 * 1 2 3 31 31 H 1.08997 * 109.46908 * 60.31549 * 1 2 3 32 32 H 1.09001 * 109.47278 * 154.68733 * 5 4 3 33 33 H 1.09006 * 109.46963 * 34.68882 * 5 4 3 34 34 H 1.00908 * 110.99662 * 56.04857 * 6 5 4 35 35 H 1.08994 * 109.91619 * 359.06023 * 9 7 6 36 36 H 1.08998 * 109.91023 * 120.33929 * 9 7 6 37 37 H 1.09001 * 109.47261 * 300.00509 * 13 11 10 38 38 H 1.09000 * 109.47087 * 59.99868 * 13 11 10 39 39 H 0.97003 * 120.00227 * 180.02562 * 18 17 15 40 40 H 1.09003 * 110.65818 * 79.15186 * 23 10 9 41 41 H 1.08991 * 110.66215 * 202.26430 * 23 10 9 42 42 H 1.09000 * 109.46924 * 59.99838 * 26 24 7 43 43 H 1.09002 * 109.47147 * 179.97438 * 26 24 7 44 44 H 1.09000 * 109.46493 * 300.00109 * 26 24 7 45 45 H 1.08002 * 126.44260 * 180.24891 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0033 5 6 4.7571 1.5727 -0.0082 6 7 5.0764 1.9555 -1.3900 7 6 6.2481 2.8405 -1.4337 8 1 6.9565 2.5688 -0.6511 9 6 5.8148 4.3099 -1.2765 10 7 6.2553 5.0237 -2.4897 11 6 6.5254 6.3391 -2.6045 12 8 6.4133 7.0675 -1.6412 13 6 6.9669 6.9048 -3.9296 14 16 7.2492 8.6848 -3.7618 15 6 7.7411 9.0731 -5.4086 16 1 7.7894 8.2946 -6.1557 17 6 8.0666 10.3795 -5.7458 18 7 8.0083 11.3283 -4.8353 19 14 8.5874 10.7914 -7.4919 20 1 7.4917 10.4408 -8.4310 21 1 8.8798 12.2439 -7.5917 22 1 9.8053 10.0168 -7.8409 23 6 6.3393 3.9993 -3.5562 24 6 6.9268 2.7684 -2.8210 25 1 8.0092 2.8558 -2.7263 26 6 6.5475 1.4740 -3.5433 27 6 3.5698 -0.6756 0.0043 28 8 2.2872 -1.0890 0.0064 29 1 -0.3633 -1.0276 0.0056 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5089 -0.8928 32 1 5.6069 1.0488 0.4294 33 1 4.5417 2.4674 0.5762 34 1 4.2817 2.3858 -1.8389 35 1 4.7304 4.3694 -1.1840 36 1 6.2894 4.7448 -0.3969 37 1 7.8904 6.4179 -4.2430 38 1 6.1921 6.7289 -4.6759 39 1 8.2354 12.2414 -5.0711 40 1 5.3490 3.7743 -3.9521 41 1 7.0076 4.3270 -4.3524 42 1 5.4665 1.4366 -3.6781 43 1 7.0359 1.4449 -4.5173 44 1 6.8694 0.6188 -2.9492 45 1 4.4470 -1.3057 0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733840058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -32.805678 kcal Electronic energy + Delta-G solvation = -26240.422286 eV Core-core repulsion = 22384.842810 eV Total energy + Delta-G solvation = -3855.579476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.26375 -41.25477 -39.28027 -36.74305 -35.27248 -34.60196 -33.65233 -32.71278 -31.52778 -29.59306 -28.25918 -27.65762 -27.14871 -26.01486 -24.00630 -22.53473 -22.04699 -20.84239 -20.61361 -19.60879 -18.30869 -17.96833 -17.73929 -17.22464 -16.92036 -16.87949 -16.52176 -15.99466 -15.92242 -15.55419 -15.02472 -14.89804 -14.67816 -14.58326 -14.32567 -13.93551 -13.87527 -13.61215 -13.44790 -13.40123 -13.21978 -13.00453 -12.99243 -12.88048 -12.83129 -12.63722 -12.30488 -12.05586 -11.78775 -11.62873 -11.57758 -11.46480 -11.14137 -11.02025 -10.31382 -9.84276 -9.74702 -9.45281 -8.70603 -8.35690 -6.15243 0.53738 1.20751 1.43068 1.43689 1.50288 1.54030 1.61399 1.90776 2.02912 2.26033 2.98234 3.01114 3.18300 3.30021 3.49615 3.57318 3.79556 3.85835 3.99730 4.07723 4.14815 4.21772 4.32143 4.40340 4.45772 4.54380 4.58536 4.64543 4.65369 4.68436 4.75271 4.78111 4.87398 4.95206 4.98390 5.09424 5.18597 5.29150 5.34999 5.38037 5.39891 5.67162 5.92771 6.18192 6.20515 6.35760 6.80609 7.04769 7.05460 8.73400 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.001908 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.053129 B =14670.968573 C =14962.353079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.181 3.819 3 N -0.519 5.519 4 C -0.034 4.034 5 C 0.141 3.859 6 N -0.656 5.656 7 C 0.092 3.908 8 H 0.111 0.889 9 C 0.078 3.922 10 N -0.618 5.618 11 C 0.548 3.452 12 O -0.570 6.570 13 C -0.118 4.118 14 S -0.151 6.151 15 C -0.547 4.547 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.261 1.261 23 C 0.093 3.907 24 C -0.086 4.086 25 H 0.090 0.910 26 C -0.110 4.110 27 C -0.050 4.050 28 O -0.213 6.213 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.035 0.965 34 H 0.342 0.658 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.272 0.728 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 -32.432 6.476 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.026 4.026 3 N -0.250 5.250 4 C -0.153 4.153 5 C 0.012 3.988 6 N -0.287 5.287 7 C -0.019 4.019 8 H 0.129 0.871 9 C -0.047 4.047 10 N -0.353 5.353 11 C 0.337 3.663 12 O -0.448 6.448 13 C -0.269 4.269 14 S 0.076 5.924 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.029 4.029 24 C -0.106 4.106 25 H 0.108 0.892 26 C -0.168 4.168 27 C -0.121 4.121 28 O -0.100 6.100 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.054 0.946 34 H 0.161 0.839 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -9.547 -31.096 7.828 33.457 hybrid contribution 0.251 0.409 -1.300 1.386 sum -9.297 -30.687 6.528 32.722 Atomic orbital electron populations 1.20456 0.79002 1.06201 1.05755 1.27062 0.97848 0.78253 0.99421 1.70333 1.02918 1.31728 1.20014 1.21790 0.92556 0.93758 1.07230 1.20248 0.92501 0.95930 0.90120 1.60801 1.07775 1.44347 1.15727 1.22455 0.93400 0.86504 0.99526 0.87095 1.22971 0.99012 0.94435 0.88251 1.48695 1.67022 1.05931 1.13613 1.19812 0.76261 0.80851 0.89395 1.90686 1.53983 1.58992 1.41182 1.23284 1.05267 1.00756 0.97619 1.85604 1.88485 1.00916 1.17424 1.23155 1.53031 0.97629 0.95623 0.89836 1.26163 0.94625 0.94876 1.03538 1.70181 1.46537 1.01892 1.36152 0.84979 0.79196 0.77365 0.76302 1.18612 1.20345 1.18510 1.23012 1.02366 0.86929 0.90563 1.22309 1.00018 0.94831 0.93419 0.89175 1.21349 1.01763 0.94734 0.98934 1.25397 0.85207 0.96054 1.05454 1.84476 1.17628 1.37997 1.69853 0.87427 0.87786 0.87854 0.86768 0.94642 0.83923 0.92329 0.92045 0.87328 0.87702 0.91947 0.89723 0.89389 0.92228 0.92798 0.91358 0.73536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.18 2.89 8.34 88.34 0.74 3.62 16 3 N -0.52 -10.62 11.29 -291.98 -3.30 -13.91 16 4 C -0.03 -0.57 6.62 41.26 0.27 -0.29 16 5 C 0.14 1.92 6.07 85.56 0.52 2.44 16 6 N -0.66 -9.08 4.56 -490.98 -2.24 -11.32 16 7 C 0.09 1.41 3.19 45.80 0.15 1.56 16 8 H 0.11 1.42 7.84 -2.39 -0.02 1.40 16 9 C 0.08 1.88 6.61 86.53 0.57 2.45 16 10 N -0.62 -17.98 3.29 -809.39 -2.66 -20.64 16 11 C 0.55 22.21 7.91 87.65 0.69 22.90 16 12 O -0.57 -28.53 16.20 -3.04 -0.05 -28.58 16 13 C -0.12 -4.97 5.09 71.23 0.36 -4.61 16 14 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 15 C -0.55 -31.69 9.50 67.95 0.65 -31.05 16 16 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 17 C 0.01 0.73 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 19 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 C 0.09 1.86 6.39 86.73 0.55 2.42 16 24 C -0.09 -1.27 3.64 -9.58 -0.03 -1.31 16 25 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 26 C -0.11 -1.27 8.52 71.98 0.61 -0.66 16 27 C -0.05 -0.63 12.08 66.93 0.81 0.18 16 28 O -0.21 -3.27 10.78 -3.70 -0.04 -3.31 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.99 8.07 -2.39 -0.02 0.97 16 33 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.34 5.82 8.15 -89.69 -0.73 5.09 16 35 H 0.06 1.47 7.57 -2.39 -0.02 1.45 16 36 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 37 H 0.11 4.11 7.91 -2.39 -0.02 4.09 16 38 H 0.10 4.04 8.14 -2.40 -0.02 4.02 16 39 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.08 1.53 8.02 -2.39 -0.02 1.51 16 41 H 0.09 1.73 7.23 -2.39 -0.02 1.72 16 42 H 0.06 0.76 7.41 -2.39 -0.02 0.74 16 43 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.25 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -82.89 390.31 0.23 -82.65 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.27 Total: 16.23 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 7.10 Total: -0.80 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -7.91 Total: -102.27 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.09 Total: -31.89 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -82.89 0.23 -82.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733840058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.847 kcal (2) G-P(sol) polarization free energy of solvation -82.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds