Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30252 * 125.62181 * 2 1 4 4 C 1.34479 * 108.70752 * 179.97438 * 3 2 1 5 5 C 1.34341 * 107.66208 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.44006 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47177 * 89.99941 * 6 5 4 8 8 C 1.46894 * 111.00230 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.64024 * 328.14530 * 8 7 6 10 10 C 1.55155 * 110.87283 * 91.39366 * 8 7 6 11 11 C 1.54689 * 101.67730 * 153.77339 * 10 8 7 12 12 N 1.47425 * 104.94131 * 323.27437 * 11 10 8 13 13 C 1.34775 * 125.64873 * 204.07881 * 12 11 10 14 14 O 1.21284 * 120.00295 * 179.69689 * 13 12 11 15 15 C 1.50708 * 119.99957 * 359.68699 * 13 12 11 16 16 S 1.80998 * 109.47052 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00013 * 180.02562 * 16 15 13 18 18 H 1.07991 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99771 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00311 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99653 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.47016 * 299.99635 * 21 19 17 24 24 H 1.48495 * 109.47483 * 59.99992 * 21 19 17 25 25 C 1.47017 * 108.70071 * 23.81031 * 12 11 10 26 26 H 1.08994 * 109.88807 * 239.74724 * 25 12 11 27 27 C 1.53004 * 109.88053 * 118.74193 * 25 12 11 28 28 O 1.33975 * 125.61751 * 180.28965 * 2 1 3 29 29 H 1.08994 * 109.47087 * 90.02141 * 1 2 3 30 30 H 1.09001 * 109.47124 * 210.02364 * 1 2 3 31 31 H 1.09001 * 109.46587 * 330.01859 * 1 2 3 32 32 H 1.07994 * 126.17342 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47358 * 330.00232 * 6 5 4 34 34 H 1.09002 * 109.47040 * 210.00246 * 6 5 4 35 35 H 1.00902 * 110.99691 * 56.04748 * 7 6 5 36 36 H 1.09001 * 111.00292 * 272.01017 * 10 8 7 37 37 H 1.08998 * 111.00228 * 35.82420 * 10 8 7 38 38 H 1.09002 * 110.38906 * 204.36355 * 11 10 8 39 39 H 1.08994 * 110.24141 * 82.11486 * 11 10 8 40 40 H 1.09005 * 109.46512 * 60.00633 * 15 13 12 41 41 H 1.08991 * 109.47135 * 300.00153 * 15 13 12 42 42 H 0.97001 * 119.99662 * 359.97438 * 20 19 17 43 43 H 1.09003 * 109.47432 * 61.45058 * 27 25 12 44 44 H 1.09000 * 109.47284 * 181.45559 * 27 25 12 45 45 H 1.09007 * 109.47118 * 301.45427 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5523 0.6675 0.0006 5 6 3.5698 -0.6758 0.0004 6 6 4.7937 -1.5550 0.0003 7 7 5.1913 -1.8409 1.3852 8 6 6.3836 -2.6981 1.4243 9 1 6.3999 -3.3729 0.5685 10 6 7.6775 -1.8434 1.4743 11 6 8.6629 -2.8079 2.1755 12 7 7.8484 -3.5233 3.1747 13 6 8.3148 -4.1047 4.2975 14 8 7.5492 -4.6638 5.0540 15 6 9.7878 -4.0604 4.6131 16 16 10.0965 -4.9224 6.1744 17 6 11.8429 -4.7212 6.2949 18 1 12.3794 -4.1881 5.5241 19 6 12.5288 -5.2480 7.3805 20 7 11.8749 -5.8982 8.3198 21 14 14.3801 -5.0340 7.5086 22 1 14.8687 -5.6839 8.7512 23 1 15.0335 -5.6622 6.3322 24 1 14.7099 -3.5866 7.5438 25 6 6.4423 -3.4917 2.7466 26 1 5.8352 -2.9958 3.5039 27 6 5.9339 -4.9176 2.5244 28 8 2.2873 -1.0891 -0.0055 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3632 0.8902 0.5136 32 1 4.4157 1.3161 0.0011 33 1 5.6081 -1.0441 -0.5134 34 1 4.5696 -2.4897 -0.5138 35 1 4.4304 -2.2565 1.9013 36 1 8.0202 -1.5942 0.4700 37 1 7.5277 -0.9422 2.0687 38 1 9.4588 -2.2474 2.6659 39 1 9.0812 -3.5099 1.4541 40 1 10.1095 -3.0226 4.7008 41 1 10.3455 -4.5474 3.8132 42 1 10.9135 -6.0090 8.2534 43 1 5.9902 -5.4734 3.4604 44 1 4.8994 -4.8854 2.1826 45 1 6.5501 -5.4100 1.7720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734388973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -12.180168 kcal Electronic energy + Delta-G solvation = -26193.783160 eV Core-core repulsion = 22339.098074 eV Total energy + Delta-G solvation = -3854.685086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.71276 -40.27932 -37.95447 -35.69937 -35.13936 -32.80585 -32.53610 -31.80464 -31.06244 -29.21745 -28.17328 -25.77274 -24.86155 -24.27284 -23.00817 -22.59138 -21.38815 -20.97895 -19.14794 -18.18824 -17.41792 -17.31728 -16.86996 -16.47495 -16.21303 -15.28962 -15.04438 -15.01491 -14.41998 -14.23488 -14.04360 -13.86476 -13.84044 -13.54718 -13.50512 -13.31819 -13.04673 -12.90027 -12.74326 -12.53182 -12.38211 -12.10210 -11.87039 -11.83028 -11.64977 -11.58331 -11.34383 -10.97510 -10.92485 -10.88272 -10.17987 -9.58517 -9.49468 -9.21064 -9.02190 -8.98736 -8.61551 -8.23211 -6.68270 -6.62890 -4.00917 0.98202 2.17393 2.29846 2.73072 2.94942 3.30669 3.37320 3.41225 3.57182 3.61516 3.76838 4.03088 4.23910 4.26960 4.32155 4.54817 4.62310 4.72188 4.84685 4.86122 4.89064 4.99648 5.02730 5.08557 5.12062 5.18225 5.21739 5.28072 5.39487 5.41979 5.46315 5.50649 5.56810 5.59694 5.75309 5.81567 5.89390 5.94293 5.99983 6.11296 6.36855 6.45483 6.70982 7.33647 7.56921 7.90868 8.44740 8.49257 9.26315 10.80976 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.001810 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.969472 B =15470.039311 C =15799.806217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.191 3.809 3 N -0.486 5.486 4 C -0.014 4.014 5 C -0.052 4.052 6 C 0.149 3.851 7 N -0.674 5.674 8 C 0.078 3.922 9 H 0.069 0.931 10 C -0.122 4.122 11 C 0.099 3.901 12 N -0.619 5.619 13 C 0.549 3.451 14 O -0.514 6.514 15 C -0.124 4.124 16 S -0.116 6.116 17 C -0.607 4.607 18 H 0.066 0.934 19 C 0.036 3.964 20 N -0.883 5.883 21 Si 1.084 2.916 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.137 3.863 26 H 0.082 0.918 27 C -0.166 4.166 28 O -0.203 6.203 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.185 0.815 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.349 0.651 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.278 0.722 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 11.044 -22.938 31.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.016 4.016 3 N -0.216 5.216 4 C -0.154 4.154 5 C -0.105 4.105 6 C 0.020 3.980 7 N -0.306 5.306 8 C -0.032 4.032 9 H 0.086 0.914 10 C -0.160 4.160 11 C -0.025 4.025 12 N -0.357 5.357 13 C 0.337 3.663 14 O -0.388 6.388 15 C -0.275 4.275 16 S 0.110 5.890 17 C -0.755 4.755 18 H 0.084 0.916 19 C -0.175 4.175 20 N -0.518 5.518 21 Si 0.910 3.090 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.211 1.211 25 C 0.033 3.967 26 H 0.100 0.900 27 C -0.224 4.224 28 O -0.091 6.091 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.202 0.798 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.169 0.831 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.887 10.941 -20.701 29.465 hybrid contribution -0.288 -0.333 -2.270 2.312 sum -18.174 10.608 -22.971 31.153 Atomic orbital electron populations 1.20277 0.81281 1.05285 1.04690 1.26339 0.96493 0.78647 1.00131 1.70484 1.02229 1.30284 1.18639 1.23087 0.94963 0.92944 1.04357 1.23206 0.83202 0.95544 1.08570 1.20306 0.89904 0.96801 0.90995 1.60586 1.08205 1.49725 1.12117 1.22659 0.90824 0.92905 0.96852 0.91363 1.22823 0.93233 0.98621 1.01363 1.22290 0.94707 0.94385 0.91068 1.48445 1.07528 1.56933 1.22750 1.19986 0.90279 0.77190 0.78805 1.90695 1.58445 1.42490 1.47191 1.23294 0.93845 1.05371 1.05010 1.84818 1.10625 1.71814 1.21706 1.23693 0.91356 1.46058 1.14442 0.91620 1.26055 1.07288 0.92827 0.91330 1.70803 1.11178 1.36561 1.33214 0.83334 0.72640 0.76502 0.76555 1.20259 1.21141 1.21114 1.21528 0.84107 0.96023 0.95079 0.90016 1.22192 1.00184 0.96392 1.03629 1.84377 1.16748 1.37942 1.70006 0.88917 0.89279 0.87992 0.79804 0.87341 0.92957 0.83146 0.89999 0.89279 0.89981 0.91365 0.89022 0.89067 0.90999 0.90362 0.92272 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.19 1.63 8.34 -12.95 -0.11 1.52 16 3 N -0.49 -5.06 11.29 -11.10 -0.13 -5.18 16 4 C -0.01 -0.13 11.80 -17.77 -0.21 -0.34 16 5 C -0.05 -0.44 6.90 -35.68 -0.25 -0.68 16 6 C 0.15 0.92 6.10 -4.98 -0.03 0.89 16 7 N -0.67 -5.06 6.34 -106.06 -0.67 -5.74 16 8 C 0.08 0.62 2.81 -65.88 -0.19 0.43 16 9 H 0.07 0.48 7.54 -51.93 -0.39 0.09 16 10 C -0.12 -0.94 6.76 -24.70 -0.17 -1.11 16 11 C 0.10 1.01 6.68 -2.65 -0.02 0.99 16 12 N -0.62 -8.68 3.07 -163.15 -0.50 -9.18 16 13 C 0.55 10.46 7.66 -10.98 -0.08 10.37 16 14 O -0.51 -11.66 14.89 5.55 0.08 -11.58 16 15 C -0.12 -2.55 5.17 36.01 0.19 -2.36 16 16 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 17 C -0.61 -17.55 9.50 30.94 0.29 -17.25 16 18 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 19 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 20 N -0.88 -27.56 13.67 55.49 0.76 -26.80 16 21 Si 1.08 24.92 29.92 -169.99 -5.09 19.83 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.14 1.58 2.96 -66.95 -0.20 1.39 16 26 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 27 C -0.17 -1.91 9.11 37.16 0.34 -1.57 16 28 O -0.20 -1.86 10.78 5.34 0.06 -1.81 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.35 2.77 8.31 -39.29 -0.33 2.45 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.76 7.84 -51.91 -0.41 1.36 16 41 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 42 H 0.28 8.85 7.12 -40.82 -0.29 8.56 16 43 H 0.08 1.17 6.87 -51.93 -0.36 0.81 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -36.96 389.09 -8.72 -45.68 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.85 Total: 0.80 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.15 Total: -6.63 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.54 Total: -46.89 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.14 Total: -13.39 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.96 -8.72 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.496 kcal (2) G-P(sol) polarization free energy of solvation -36.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds