Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30252 * 125.62181 * 2 1 4 4 C 1.34479 * 108.70752 * 179.97438 * 3 2 1 5 5 C 1.34341 * 107.66208 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.44006 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47177 * 89.99941 * 6 5 4 8 8 C 1.46894 * 111.00230 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.64024 * 328.14530 * 8 7 6 10 10 C 1.55155 * 110.87283 * 91.39366 * 8 7 6 11 11 C 1.54689 * 101.67730 * 153.77339 * 10 8 7 12 12 N 1.47425 * 104.94131 * 323.27437 * 11 10 8 13 13 C 1.34775 * 125.64873 * 204.07881 * 12 11 10 14 14 O 1.21284 * 120.00295 * 179.69689 * 13 12 11 15 15 C 1.50708 * 119.99957 * 359.68699 * 13 12 11 16 16 S 1.80998 * 109.47052 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00013 * 180.02562 * 16 15 13 18 18 H 1.07991 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99771 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00311 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99653 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.47016 * 299.99635 * 21 19 17 24 24 H 1.48495 * 109.47483 * 59.99992 * 21 19 17 25 25 C 1.47017 * 108.70071 * 23.81031 * 12 11 10 26 26 H 1.08994 * 109.88807 * 239.74724 * 25 12 11 27 27 C 1.53004 * 109.88053 * 118.74193 * 25 12 11 28 28 O 1.33975 * 125.61751 * 180.28965 * 2 1 3 29 29 H 1.08994 * 109.47087 * 90.02141 * 1 2 3 30 30 H 1.09001 * 109.47124 * 210.02364 * 1 2 3 31 31 H 1.09001 * 109.46587 * 330.01859 * 1 2 3 32 32 H 1.07994 * 126.17342 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47358 * 330.00232 * 6 5 4 34 34 H 1.09002 * 109.47040 * 210.00246 * 6 5 4 35 35 H 1.00902 * 110.99691 * 56.04748 * 7 6 5 36 36 H 1.09001 * 111.00292 * 272.01017 * 10 8 7 37 37 H 1.08998 * 111.00228 * 35.82420 * 10 8 7 38 38 H 1.09002 * 110.38906 * 204.36355 * 11 10 8 39 39 H 1.08994 * 110.24141 * 82.11486 * 11 10 8 40 40 H 1.09005 * 109.46512 * 60.00633 * 15 13 12 41 41 H 1.08991 * 109.47135 * 300.00153 * 15 13 12 42 42 H 0.97001 * 119.99662 * 359.97438 * 20 19 17 43 43 H 1.09003 * 109.47432 * 61.45058 * 27 25 12 44 44 H 1.09000 * 109.47284 * 181.45559 * 27 25 12 45 45 H 1.09007 * 109.47118 * 301.45427 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5523 0.6675 0.0006 5 6 3.5698 -0.6758 0.0004 6 6 4.7937 -1.5550 0.0003 7 7 5.1913 -1.8409 1.3852 8 6 6.3836 -2.6981 1.4243 9 1 6.3999 -3.3729 0.5685 10 6 7.6775 -1.8434 1.4743 11 6 8.6629 -2.8079 2.1755 12 7 7.8484 -3.5233 3.1747 13 6 8.3148 -4.1047 4.2975 14 8 7.5492 -4.6638 5.0540 15 6 9.7878 -4.0604 4.6131 16 16 10.0965 -4.9224 6.1744 17 6 11.8429 -4.7212 6.2949 18 1 12.3794 -4.1881 5.5241 19 6 12.5288 -5.2480 7.3805 20 7 11.8749 -5.8982 8.3198 21 14 14.3801 -5.0340 7.5086 22 1 14.8687 -5.6839 8.7512 23 1 15.0335 -5.6622 6.3322 24 1 14.7099 -3.5866 7.5438 25 6 6.4423 -3.4917 2.7466 26 1 5.8352 -2.9958 3.5039 27 6 5.9339 -4.9176 2.5244 28 8 2.2873 -1.0891 -0.0055 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3632 0.8902 0.5136 32 1 4.4157 1.3161 0.0011 33 1 5.6081 -1.0441 -0.5134 34 1 4.5696 -2.4897 -0.5138 35 1 4.4304 -2.2565 1.9013 36 1 8.0202 -1.5942 0.4700 37 1 7.5277 -0.9422 2.0687 38 1 9.4588 -2.2474 2.6659 39 1 9.0812 -3.5099 1.4541 40 1 10.1095 -3.0226 4.7008 41 1 10.3455 -4.5474 3.8132 42 1 10.9135 -6.0090 8.2534 43 1 5.9902 -5.4734 3.4604 44 1 4.8994 -4.8854 2.1826 45 1 6.5501 -5.4100 1.7720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734388973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -40.823465 kcal Electronic energy + Delta-G solvation = -26195.025227 eV Core-core repulsion = 22339.098074 eV Total energy + Delta-G solvation = -3855.927153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.32067 -41.38996 -39.11630 -36.51230 -35.78169 -34.75768 -33.56205 -32.65360 -31.95998 -30.35084 -29.04419 -27.08602 -26.47407 -24.92638 -24.01292 -23.24817 -21.98640 -21.74818 -20.70563 -19.92011 -18.27054 -18.04174 -17.79113 -17.52445 -17.00687 -16.72588 -16.33275 -15.78967 -15.70435 -15.56052 -14.97195 -14.91835 -14.68595 -14.61190 -14.41353 -14.09764 -13.93148 -13.91780 -13.81980 -13.72281 -13.33911 -13.25226 -13.17840 -12.77452 -12.73614 -12.43905 -12.30655 -12.07476 -11.95582 -11.75400 -11.58625 -11.52787 -11.10226 -11.00415 -10.34162 -9.83269 -9.75662 -9.53565 -8.93526 -8.89379 -6.29195 0.38654 1.12527 1.46474 1.51211 1.60605 1.62956 1.69243 1.80688 1.95990 2.33451 3.01598 3.04104 3.07573 3.20865 3.27925 3.56737 3.70843 3.79879 3.95608 4.06806 4.09295 4.14504 4.19457 4.28164 4.30220 4.34487 4.45183 4.49178 4.62076 4.62589 4.68015 4.72054 4.73072 4.90682 4.99191 5.01922 5.05342 5.13907 5.21640 5.36798 5.38705 5.62998 5.84748 6.08815 6.13410 6.31953 6.72701 7.02335 7.05614 8.49772 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.001810 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.969472 B =15470.039311 C =15799.806217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.185 3.815 3 N -0.522 5.522 4 C -0.032 4.032 5 C -0.056 4.056 6 C 0.154 3.846 7 N -0.680 5.680 8 C 0.094 3.906 9 H 0.092 0.908 10 C -0.111 4.111 11 C 0.087 3.913 12 N -0.610 5.610 13 C 0.545 3.455 14 O -0.564 6.564 15 C -0.100 4.100 16 S -0.196 6.196 17 C -0.614 4.614 18 H 0.076 0.924 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.137 2.863 22 H -0.280 1.280 23 H -0.262 1.262 24 H -0.263 1.263 25 C 0.131 3.869 26 H 0.062 0.938 27 C -0.159 4.159 28 O -0.214 6.214 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.198 0.802 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.345 0.655 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.260 0.740 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.462 12.328 -26.240 33.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.022 4.022 3 N -0.253 5.253 4 C -0.171 4.171 5 C -0.109 4.109 6 C 0.025 3.975 7 N -0.313 5.313 8 C -0.016 4.016 9 H 0.109 0.891 10 C -0.149 4.149 11 C -0.035 4.035 12 N -0.345 5.345 13 C 0.333 3.667 14 O -0.442 6.442 15 C -0.251 4.251 16 S 0.031 5.969 17 C -0.761 4.761 18 H 0.094 0.906 19 C -0.222 4.222 20 N -0.548 5.548 21 Si 0.954 3.046 22 H -0.205 1.205 23 H -0.187 1.187 24 H -0.188 1.188 25 C 0.027 3.973 26 H 0.080 0.920 27 C -0.217 4.217 28 O -0.102 6.102 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.215 0.785 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.193 12.267 -24.080 32.030 hybrid contribution -0.653 -0.658 -1.358 1.644 sum -17.846 11.609 -25.438 33.171 Atomic orbital electron populations 1.20517 0.78636 1.06275 1.06108 1.27200 0.97918 0.78193 0.98841 1.70481 1.03179 1.31432 1.20165 1.23424 0.95118 0.93738 1.04793 1.23583 0.83535 0.95681 1.08065 1.20442 0.89600 0.97224 0.90217 1.60584 1.07995 1.49553 1.13138 1.22541 0.91272 0.92822 0.94959 0.89061 1.22825 0.92057 0.97255 1.02786 1.22693 0.95101 0.95158 0.90555 1.48404 1.09467 1.55084 1.21540 1.19699 0.89281 0.77681 0.80002 1.90679 1.59123 1.45081 1.49335 1.23156 0.95668 1.05106 1.01161 1.85070 1.10943 1.73734 1.27146 1.24026 0.91784 1.45614 1.14683 0.90603 1.27861 1.11955 0.91641 0.90730 1.70923 1.10285 1.38844 1.34725 0.82722 0.66805 0.77852 0.77214 1.20548 1.18665 1.18750 1.21731 0.82193 0.96646 0.96726 0.91968 1.22116 1.02107 0.95784 1.01741 1.84388 1.17290 1.38348 1.70192 0.87157 0.87799 0.87422 0.78487 0.85191 0.91722 0.83557 0.86352 0.90246 0.89894 0.89207 0.87490 0.87309 0.92939 0.94495 0.89669 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.18 2.99 8.34 88.34 0.74 3.73 16 3 N -0.52 -10.54 11.29 -303.82 -3.43 -13.97 16 4 C -0.03 -0.54 11.80 83.40 0.98 0.44 16 5 C -0.06 -0.83 6.90 24.79 0.17 -0.66 16 6 C 0.15 1.38 6.10 85.56 0.52 1.91 16 7 N -0.68 -8.37 6.34 -489.47 -3.10 -11.47 16 8 C 0.09 1.17 2.81 46.10 0.13 1.30 16 9 H 0.09 0.81 7.54 -2.39 -0.02 0.79 16 10 C -0.11 -1.26 6.76 31.91 0.22 -1.05 16 11 C 0.09 1.49 6.68 86.78 0.58 2.07 16 12 N -0.61 -16.36 3.07 -788.49 -2.42 -18.78 16 13 C 0.55 20.98 7.66 87.66 0.67 21.65 16 14 O -0.56 -26.78 14.89 -3.04 -0.05 -26.83 16 15 C -0.10 -4.06 5.17 71.24 0.37 -3.70 16 16 S -0.20 -10.95 19.60 -56.49 -1.11 -12.06 16 17 C -0.61 -35.61 9.50 67.95 0.65 -34.97 16 18 H 0.08 4.11 7.80 -2.92 -0.02 4.08 16 19 C -0.02 -1.10 5.49 84.86 0.47 -0.63 16 20 N -0.91 -58.42 13.67 21.65 0.30 -58.12 16 21 Si 1.14 49.26 29.92 68.60 2.05 51.31 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 25 C 0.13 2.86 2.96 45.34 0.13 3.00 16 26 H 0.06 1.62 7.90 -2.39 -0.02 1.60 16 27 C -0.16 -3.53 9.11 71.98 0.66 -2.88 16 28 O -0.21 -3.65 10.78 -3.80 -0.04 -3.69 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.46 8.08 -2.39 -0.02 0.44 16 35 H 0.35 4.86 8.31 -89.69 -0.75 4.11 16 36 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.44 7.48 -2.39 -0.02 1.42 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 4.01 7.84 -2.39 -0.02 3.99 16 41 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 42 H 0.26 17.33 7.12 -92.71 -0.66 16.67 16 43 H 0.04 1.13 6.87 -2.39 -0.02 1.12 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -85.20 389.09 -0.40 -85.60 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.37 Total: 17.43 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 7.03 Total: -9.42 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -8.66 Total: -102.34 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.09 Total: -30.52 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Atomic # 16 Polarization: -10.95 SS G_CDS: -1.11 Total: -12.06 kcal Total: -85.20 -0.40 -85.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.778 kcal (2) G-P(sol) polarization free energy of solvation -85.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds