Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32560 * 121.64870 * 2 1 4 4 S 1.77229 * 105.31993 * 179.97438 * 3 2 1 5 5 C 1.72203 * 94.84658 * 0.29003 * 4 3 2 6 6 O 1.21828 * 127.05853 * 179.79758 * 5 4 3 7 7 N 1.34241 * 105.88659 * 359.83497 * 5 4 3 8 8 C 1.46505 * 121.38200 * 179.97438 * 7 5 4 9 9 C 1.52991 * 109.47117 * 270.02016 * 8 7 5 10 10 C 1.50696 * 109.47278 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99912 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00115 * 180.02562 * 10 9 8 13 13 C 1.47020 * 125.64930 * 359.69171 * 12 10 9 14 14 C 1.54334 * 107.26682 * 178.84871 * 13 12 10 15 15 C 1.55157 * 103.01929 * 338.14134 * 14 13 12 16 16 H 1.08999 * 111.00321 * 277.22698 * 15 14 13 17 17 C 1.53005 * 111.00377 * 153.38023 * 15 14 13 18 18 N 1.46498 * 109.46976 * 72.80318 * 17 15 14 19 19 C 1.36938 * 119.99820 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00155 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99747 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47120 * 90.00674 * 23 21 19 25 25 H 1.48506 * 109.47002 * 209.99935 * 23 21 19 26 26 H 1.48496 * 109.47770 * 330.00347 * 23 21 19 27 27 C 1.47429 * 125.64721 * 179.97438 * 12 10 9 28 28 H 1.08999 * 109.47015 * 269.71758 * 1 2 3 29 29 H 1.09000 * 109.46646 * 29.70911 * 1 2 3 30 30 H 1.09000 * 109.47248 * 149.71628 * 1 2 3 31 31 H 1.08001 * 127.33639 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46920 * 30.02446 * 8 7 5 33 33 H 1.09000 * 109.47049 * 150.02111 * 8 7 5 34 34 H 1.09001 * 109.47292 * 300.00314 * 9 8 7 35 35 H 1.09000 * 109.47084 * 60.00116 * 9 8 7 36 36 H 1.09000 * 109.88269 * 298.39084 * 13 12 10 37 37 H 1.08995 * 109.87993 * 59.56094 * 13 12 10 38 38 H 1.08994 * 110.85062 * 219.67126 * 14 13 12 39 39 H 1.09007 * 110.66694 * 96.51995 * 14 13 12 40 40 H 1.08997 * 109.47261 * 192.79820 * 17 15 14 41 41 H 1.09005 * 109.46978 * 312.80216 * 17 15 14 42 42 H 0.97003 * 120.00609 * 359.97438 * 18 17 15 43 43 H 0.96999 * 120.00131 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36682 * 322.93205 * 27 12 10 45 45 H 1.08998 * 110.36609 * 85.25350 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6302 0.0008 5 6 3.5606 -1.0574 -0.0077 6 8 4.3673 -1.9704 -0.0139 7 7 2.2222 -1.1605 -0.0068 8 6 1.5576 -2.4661 -0.0135 9 6 1.3252 -2.9127 -1.4582 10 6 0.6410 -4.2553 -1.4651 11 8 0.3659 -4.8011 -0.4176 12 7 0.3348 -4.8497 -2.6354 13 6 0.6040 -4.2997 -3.9720 14 6 0.1089 -5.3366 -5.0023 15 6 0.0950 -6.6580 -4.1893 16 1 1.0873 -7.1080 -4.1582 17 6 -0.9325 -7.6399 -4.7561 18 7 -0.4407 -8.1833 -6.0245 19 6 -1.1965 -9.0885 -6.7205 20 1 -2.1554 -9.4016 -6.3346 21 6 -0.7303 -9.6039 -7.9221 22 7 -1.4570 -10.4736 -8.5914 23 14 0.9279 -9.0620 -8.5900 24 1 1.9879 -9.9666 -8.0768 25 1 0.9059 -9.1172 -10.0739 26 1 1.2083 -7.6716 -8.1505 27 6 -0.3308 -6.1563 -2.7871 28 1 -0.3633 -0.0051 1.0276 29 1 -0.3632 0.8926 -0.5093 30 1 -0.3634 -0.8874 -0.5182 31 1 1.8153 2.1366 0.0004 32 1 2.1862 -3.1963 0.4959 33 1 0.6000 -2.3890 0.5015 34 1 0.6965 -2.1823 -1.9676 35 1 2.2828 -2.9898 -1.9732 36 1 0.0668 -3.3601 -4.1013 37 1 1.6745 -4.1374 -4.0973 38 1 0.7989 -5.4082 -5.8429 39 1 -0.8940 -5.0863 -5.3485 40 1 -1.0867 -8.4537 -4.0476 41 1 -1.8763 -7.1211 -4.9246 42 1 0.4201 -7.9014 -6.3718 43 1 -1.1313 -10.8334 -9.4312 44 1 0.0107 -6.8478 -2.0168 45 1 -1.4134 -6.0384 -2.7392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752940531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -22.578322 kcal Electronic energy + Delta-G solvation = -26601.970072 eV Core-core repulsion = 22746.834088 eV Total energy + Delta-G solvation = -3855.135984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.53916 -40.21202 -38.06354 -37.87042 -34.94867 -33.89039 -32.42516 -31.70511 -30.65833 -29.45108 -28.59067 -26.17960 -24.96850 -23.68056 -22.91289 -22.04686 -20.76151 -20.33646 -19.42492 -18.52807 -17.96158 -17.58425 -16.97600 -16.71064 -16.33725 -15.78438 -15.49170 -15.02438 -14.64241 -14.49762 -14.19661 -14.13290 -14.02298 -13.71370 -13.70078 -13.28680 -13.17888 -13.02040 -12.70321 -12.66189 -12.52116 -11.90609 -11.85479 -11.78091 -11.65820 -11.60079 -11.01139 -10.76387 -10.68722 -10.59460 -10.48238 -10.23899 -10.18039 -9.95368 -9.63717 -8.95230 -8.84926 -8.40722 -7.29156 -5.81188 -3.17451 0.52729 0.91864 1.34848 1.69648 2.22983 2.33133 2.78795 3.32086 3.35693 3.41652 3.92990 4.18027 4.24928 4.30110 4.51851 4.52215 4.54536 4.65480 4.74293 4.85081 4.86773 4.90760 5.00715 5.09067 5.10725 5.18936 5.26580 5.39896 5.43116 5.49602 5.65133 5.69022 5.72231 5.79963 5.82373 5.98104 6.09112 6.21284 6.26354 6.56227 6.64935 6.88682 7.27094 7.85531 7.94258 8.37470 9.15994 9.88091 10.07392 11.37076 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.001984 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.688517 B =14108.655744 C =14581.851060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.103 3.897 3 C -0.239 4.239 4 S 0.000 6.000 5 C 0.479 3.521 6 O -0.468 6.468 7 N -0.533 5.533 8 C 0.117 3.883 9 C -0.154 4.154 10 C 0.534 3.466 11 O -0.542 6.542 12 N -0.614 5.614 13 C 0.098 3.902 14 C -0.124 4.124 15 C -0.111 4.111 16 H 0.085 0.915 17 C 0.169 3.831 18 N -0.754 5.754 19 C -0.246 4.246 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.114 3.886 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.192 0.808 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 28.078 18.105 33.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.008 4.008 3 C -0.377 4.377 4 S 0.242 5.758 5 C 0.161 3.839 6 O -0.347 6.347 7 N -0.254 5.254 8 C -0.008 4.008 9 C -0.195 4.195 10 C 0.322 3.678 11 O -0.420 6.420 12 N -0.348 5.348 13 C -0.025 4.025 14 C -0.162 4.162 15 C -0.130 4.130 16 H 0.103 0.897 17 C 0.042 3.958 18 N -0.400 5.400 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.009 4.009 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.209 0.791 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.295 27.738 18.678 34.028 hybrid contribution 0.044 -0.364 -0.821 0.899 sum 6.339 27.374 17.857 33.293 Atomic orbital electron populations 1.20827 0.86496 1.04709 1.04267 1.19492 0.95928 0.84853 1.00489 1.24918 0.93185 1.01354 1.18272 1.85245 1.08487 1.01147 1.80879 1.21651 0.83781 0.95786 0.82726 1.91002 1.48575 1.42374 1.52791 1.46161 1.06399 1.07807 1.65066 1.21613 1.00069 0.82446 0.96682 1.21966 1.03064 0.95721 0.98706 1.19845 0.78926 0.86513 0.82531 1.90735 1.54711 1.65901 1.30676 1.48524 1.59297 1.21331 1.05649 1.22169 1.00716 0.97691 0.81954 1.22697 1.03050 0.93428 0.97034 1.22635 1.01377 0.95842 0.93171 0.89691 1.20523 0.93825 0.93462 0.88036 1.42658 1.21973 1.52710 1.22668 1.19045 1.01523 1.15434 1.01534 0.89172 1.24687 0.98092 0.98980 0.97414 1.69700 1.37979 1.33508 1.16889 0.86537 0.85232 0.78239 0.78389 1.21081 1.21715 1.20385 1.22269 0.97372 0.83566 0.97675 0.89400 0.88934 0.90375 0.79069 0.87665 0.87785 0.88250 0.88142 0.91310 0.91416 0.89774 0.89840 0.95067 0.95098 0.80658 0.93009 0.90116 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.28 9.31 36.01 0.34 0.06 16 2 C 0.10 0.57 6.59 -82.51 -0.54 0.03 16 3 C -0.24 -1.20 11.24 28.82 0.32 -0.88 16 4 S 0.00 0.00 22.97 -107.50 -2.47 -2.47 16 5 C 0.48 5.09 8.27 53.82 0.45 5.53 16 6 O -0.47 -6.64 17.55 5.07 0.09 -6.55 16 7 N -0.53 -4.31 2.60 -117.28 -0.31 -4.62 16 8 C 0.12 0.97 4.26 -4.04 -0.02 0.95 16 9 C -0.15 -1.25 5.12 -27.89 -0.14 -1.39 16 10 C 0.53 6.14 7.85 -10.99 -0.09 6.06 16 11 O -0.54 -8.00 16.24 5.56 0.09 -7.91 16 12 N -0.61 -6.97 3.33 -170.53 -0.57 -7.54 16 13 C 0.10 0.92 6.49 -3.06 -0.02 0.90 16 14 C -0.12 -1.47 6.37 -24.89 -0.16 -1.63 16 15 C -0.11 -1.53 3.05 -88.48 -0.27 -1.80 16 16 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.17 3.02 5.71 -4.04 -0.02 3.00 16 18 N -0.75 -17.12 5.35 -59.91 -0.32 -17.44 16 19 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -28.98 13.97 55.49 0.78 -28.21 16 23 Si 0.89 21.64 27.74 -169.99 -4.71 16.93 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 27 C 0.11 1.43 6.37 -2.54 -0.02 1.41 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.09 8.10 -51.93 -0.42 -0.33 16 30 H 0.08 0.23 6.22 -51.93 -0.32 -0.09 16 31 H 0.19 0.39 8.06 -52.49 -0.42 -0.03 16 32 H 0.11 1.10 7.76 -51.93 -0.40 0.69 16 33 H 0.10 0.72 6.79 -51.93 -0.35 0.37 16 34 H 0.10 0.58 7.51 -51.93 -0.39 0.19 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.55 7.97 -51.93 -0.41 0.14 16 42 H 0.36 7.95 5.53 -40.82 -0.23 7.72 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 45 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -35.14 382.37 -8.83 -43.97 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.75 Total: 2.76 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.43 Total: 5.30 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.42 Total: -57.80 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.18 Total: -14.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.47 Total: -2.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.14 -8.83 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752940531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.395 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds