Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32560 * 121.64870 * 2 1 4 4 S 1.77229 * 105.31993 * 179.97438 * 3 2 1 5 5 C 1.72203 * 94.84658 * 0.29003 * 4 3 2 6 6 O 1.21828 * 127.05853 * 179.79758 * 5 4 3 7 7 N 1.34241 * 105.88659 * 359.83497 * 5 4 3 8 8 C 1.46505 * 121.38200 * 179.97438 * 7 5 4 9 9 C 1.52991 * 109.47117 * 270.02016 * 8 7 5 10 10 C 1.50696 * 109.47278 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99912 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00115 * 180.02562 * 10 9 8 13 13 C 1.47020 * 125.64930 * 359.69171 * 12 10 9 14 14 C 1.54334 * 107.26682 * 178.84871 * 13 12 10 15 15 C 1.55157 * 103.01929 * 338.14134 * 14 13 12 16 16 H 1.08999 * 111.00321 * 277.22698 * 15 14 13 17 17 C 1.53005 * 111.00377 * 153.38023 * 15 14 13 18 18 N 1.46498 * 109.46976 * 72.80318 * 17 15 14 19 19 C 1.36938 * 119.99820 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00155 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99747 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47120 * 90.00674 * 23 21 19 25 25 H 1.48506 * 109.47002 * 209.99935 * 23 21 19 26 26 H 1.48496 * 109.47770 * 330.00347 * 23 21 19 27 27 C 1.47429 * 125.64721 * 179.97438 * 12 10 9 28 28 H 1.08999 * 109.47015 * 269.71758 * 1 2 3 29 29 H 1.09000 * 109.46646 * 29.70911 * 1 2 3 30 30 H 1.09000 * 109.47248 * 149.71628 * 1 2 3 31 31 H 1.08001 * 127.33639 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46920 * 30.02446 * 8 7 5 33 33 H 1.09000 * 109.47049 * 150.02111 * 8 7 5 34 34 H 1.09001 * 109.47292 * 300.00314 * 9 8 7 35 35 H 1.09000 * 109.47084 * 60.00116 * 9 8 7 36 36 H 1.09000 * 109.88269 * 298.39084 * 13 12 10 37 37 H 1.08995 * 109.87993 * 59.56094 * 13 12 10 38 38 H 1.08994 * 110.85062 * 219.67126 * 14 13 12 39 39 H 1.09007 * 110.66694 * 96.51995 * 14 13 12 40 40 H 1.08997 * 109.47261 * 192.79820 * 17 15 14 41 41 H 1.09005 * 109.46978 * 312.80216 * 17 15 14 42 42 H 0.97003 * 120.00609 * 359.97438 * 18 17 15 43 43 H 0.96999 * 120.00131 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36682 * 322.93205 * 27 12 10 45 45 H 1.08998 * 110.36609 * 85.25350 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6302 0.0008 5 6 3.5606 -1.0574 -0.0077 6 8 4.3673 -1.9704 -0.0139 7 7 2.2222 -1.1605 -0.0068 8 6 1.5576 -2.4661 -0.0135 9 6 1.3252 -2.9127 -1.4582 10 6 0.6410 -4.2553 -1.4651 11 8 0.3659 -4.8011 -0.4176 12 7 0.3348 -4.8497 -2.6354 13 6 0.6040 -4.2997 -3.9720 14 6 0.1089 -5.3366 -5.0023 15 6 0.0950 -6.6580 -4.1893 16 1 1.0873 -7.1080 -4.1582 17 6 -0.9325 -7.6399 -4.7561 18 7 -0.4407 -8.1833 -6.0245 19 6 -1.1965 -9.0885 -6.7205 20 1 -2.1554 -9.4016 -6.3346 21 6 -0.7303 -9.6039 -7.9221 22 7 -1.4570 -10.4736 -8.5914 23 14 0.9279 -9.0620 -8.5900 24 1 1.9879 -9.9666 -8.0768 25 1 0.9059 -9.1172 -10.0739 26 1 1.2083 -7.6716 -8.1505 27 6 -0.3308 -6.1563 -2.7871 28 1 -0.3633 -0.0051 1.0276 29 1 -0.3632 0.8926 -0.5093 30 1 -0.3634 -0.8874 -0.5182 31 1 1.8153 2.1366 0.0004 32 1 2.1862 -3.1963 0.4959 33 1 0.6000 -2.3890 0.5015 34 1 0.6965 -2.1823 -1.9676 35 1 2.2828 -2.9898 -1.9732 36 1 0.0668 -3.3601 -4.1013 37 1 1.6745 -4.1374 -4.0973 38 1 0.7989 -5.4082 -5.8429 39 1 -0.8940 -5.0863 -5.3485 40 1 -1.0867 -8.4537 -4.0476 41 1 -1.8763 -7.1211 -4.9246 42 1 0.4201 -7.9014 -6.3718 43 1 -1.1313 -10.8334 -9.4312 44 1 0.0107 -6.8478 -2.0168 45 1 -1.4134 -6.0384 -2.7392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752940531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -46.662705 kcal Electronic energy + Delta-G solvation = -26603.014449 eV Core-core repulsion = 22746.834088 eV Total energy + Delta-G solvation = -3856.180361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17351 -41.12602 -39.03248 -38.68673 -36.60826 -34.56215 -33.99426 -32.55077 -31.97282 -30.42355 -29.19257 -27.37331 -25.92153 -24.55954 -23.79755 -23.64871 -21.58149 -21.35064 -20.28880 -19.64866 -19.07086 -18.65178 -17.78994 -17.51538 -17.21402 -16.78735 -16.38847 -16.23563 -15.81321 -15.44156 -15.17431 -15.00740 -14.90619 -14.63889 -14.54263 -14.45786 -14.15039 -13.99662 -13.85364 -13.57776 -13.31372 -13.11950 -13.03012 -12.83865 -12.45129 -12.34486 -12.14439 -12.09263 -12.05930 -11.86480 -11.77484 -11.63919 -11.26365 -11.09414 -10.97552 -10.61926 -9.75910 -9.30452 -8.97996 -8.02723 -5.36803 -0.13678 0.37036 0.85959 1.09241 1.37570 1.42434 1.45279 1.49562 1.59444 1.98023 2.48688 3.22122 3.29469 3.46280 3.56929 3.58988 3.62558 3.75206 3.85149 4.08678 4.20636 4.21224 4.27900 4.32908 4.39316 4.48702 4.55089 4.62130 4.67537 4.74710 4.76480 4.79744 4.82356 4.96432 5.00308 5.03983 5.18143 5.19147 5.30333 5.36347 5.71696 5.75549 6.20725 6.21493 6.40046 6.96883 7.07792 7.82925 8.02785 9.18678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.001984 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.688517 B =14108.655744 C =14581.851060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.221 4.221 4 S -0.005 6.005 5 C 0.459 3.541 6 O -0.523 6.523 7 N -0.529 5.529 8 C 0.120 3.880 9 C -0.140 4.140 10 C 0.532 3.468 11 O -0.581 6.581 12 N -0.615 5.615 13 C 0.102 3.898 14 C -0.122 4.122 15 C -0.103 4.103 16 H 0.081 0.919 17 C 0.167 3.833 18 N -0.755 5.755 19 C -0.235 4.235 20 H 0.055 0.945 21 C -0.067 4.067 22 N -0.984 5.984 23 Si 0.957 3.043 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.243 1.243 27 C 0.118 3.882 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.034 0.966 42 H 0.367 0.633 43 H 0.258 0.742 44 H 0.067 0.933 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 32.059 18.196 37.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.357 4.357 4 S 0.239 5.761 5 C 0.143 3.857 6 O -0.407 6.407 7 N -0.249 5.249 8 C -0.006 4.006 9 C -0.180 4.180 10 C 0.322 3.678 11 O -0.461 6.461 12 N -0.348 5.348 13 C -0.020 4.020 14 C -0.160 4.160 15 C -0.123 4.123 16 H 0.099 0.901 17 C 0.041 3.959 18 N -0.401 5.401 19 C -0.366 4.366 20 H 0.073 0.927 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.784 3.216 24 H -0.209 1.209 25 H -0.223 1.223 26 H -0.167 1.167 27 C -0.005 4.005 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.245 0.755 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.546 31.806 18.800 37.522 hybrid contribution -0.171 -1.567 -0.750 1.746 sum 6.375 30.239 18.050 35.788 Atomic orbital electron populations 1.20959 0.83930 1.05913 1.05213 1.20014 0.97331 0.83839 1.00580 1.25443 0.90602 1.02772 1.16929 1.85268 1.11397 0.99221 1.80261 1.22039 0.84338 0.96350 0.82965 1.90958 1.50080 1.44246 1.55378 1.46182 1.05807 1.08598 1.64337 1.21516 0.99991 0.82172 0.96875 1.21889 1.02995 0.94358 0.98750 1.20376 0.78324 0.87289 0.81833 1.90721 1.56313 1.67065 1.32048 1.48578 1.58939 1.20726 1.06582 1.22279 1.02004 0.97885 0.79820 1.22688 1.03316 0.92593 0.97424 1.22421 0.99595 0.95997 0.94247 0.90094 1.20637 0.95249 0.94057 0.85980 1.42622 1.21761 1.51928 1.23766 1.19020 1.00540 1.15496 1.01551 0.92663 1.25562 1.02611 0.99569 0.98058 1.69892 1.40464 1.35603 1.17533 0.85384 0.79697 0.79549 0.76995 1.20916 1.22326 1.16707 1.22088 0.97749 0.84313 0.96338 0.88536 0.86456 0.90414 0.75497 0.90629 0.86228 0.84937 0.88432 0.88188 0.90034 0.89673 0.89842 0.95984 0.94779 0.79925 0.93348 0.91476 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.12 9.31 71.24 0.66 0.55 16 2 C 0.09 0.72 6.59 40.71 0.27 0.98 16 3 C -0.22 -1.42 11.24 66.67 0.75 -0.67 16 4 S 0.00 -0.07 22.97 -56.49 -1.30 -1.36 16 5 C 0.46 9.71 8.27 129.87 1.07 10.78 16 6 O -0.52 -15.55 17.55 -4.76 -0.08 -15.64 16 7 N -0.53 -7.77 2.60 -643.44 -1.68 -9.45 16 8 C 0.12 1.87 4.26 86.38 0.37 2.24 16 9 C -0.14 -1.96 5.12 29.84 0.15 -1.80 16 10 C 0.53 11.38 7.85 87.66 0.69 12.07 16 11 O -0.58 -16.92 16.24 -3.02 -0.05 -16.97 16 12 N -0.62 -12.57 3.33 -811.83 -2.70 -15.27 16 13 C 0.10 1.54 6.49 86.73 0.56 2.11 16 14 C -0.12 -2.52 6.37 31.79 0.20 -2.32 16 15 C -0.10 -2.69 3.05 -9.41 -0.03 -2.72 16 16 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 17 C 0.17 5.88 5.71 86.38 0.49 6.38 16 18 N -0.75 -33.63 5.35 -343.44 -1.84 -35.46 16 19 C -0.24 -13.19 10.47 84.03 0.88 -12.31 16 20 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.98 -62.75 13.97 21.65 0.30 -62.45 16 23 Si 0.96 44.31 27.74 68.60 1.90 46.21 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.24 -9.75 6.52 99.48 0.65 -9.10 16 27 C 0.12 2.84 6.37 86.85 0.55 3.39 16 28 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.12 -0.40 8.10 -2.39 -0.02 -0.42 16 30 H 0.08 0.14 6.22 -2.39 -0.01 0.13 16 31 H 0.23 -0.25 8.06 -2.91 -0.02 -0.27 16 32 H 0.08 1.65 7.76 -2.39 -0.02 1.63 16 33 H 0.12 1.46 6.79 -2.39 -0.02 1.44 16 34 H 0.13 0.98 7.51 -2.39 -0.02 0.96 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.75 7.91 -2.38 -0.02 1.73 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.03 1.20 7.97 -2.38 -0.02 1.18 16 42 H 0.37 15.37 5.53 -92.71 -0.51 14.85 16 43 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 45 H 0.08 1.81 8.03 -2.39 -0.02 1.79 16 Total: -1.00 -80.56 382.37 2.09 -78.47 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.43 Total: 16.67 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 7.09 Total: 15.25 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -5.91 Total: -122.63 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.13 Total: -32.60 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.30 Total: -1.36 kcal Total: -80.56 2.09 -78.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752940531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.805 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds