Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30255 * 125.62477 * 2 1 4 4 C 1.34473 * 108.70295 * 179.77972 * 3 2 1 5 5 C 1.34326 * 107.67148 * 0.39253 * 4 3 2 6 6 C 1.50696 * 126.44555 * 179.87858 * 5 4 3 7 7 N 1.46906 * 109.47144 * 89.71444 * 6 5 4 8 8 C 1.47897 * 110.99555 * 290.12261 * 7 6 5 9 9 C 1.54000 * 107.05672 * 145.84575 * 8 7 6 10 10 C 1.54598 * 105.22213 * 358.72428 * 9 8 7 11 11 H 1.09003 * 110.72246 * 96.45403 * 10 9 8 12 12 C 1.53005 * 110.72373 * 219.73164 * 10 9 8 13 13 N 1.46502 * 109.46933 * 293.55216 * 12 10 9 14 14 C 1.34779 * 119.99570 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00270 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00019 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47334 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00149 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99994 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00109 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99921 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46918 * 60.00792 * 22 20 18 24 24 H 1.48498 * 109.47160 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47536 * 300.00876 * 22 20 18 26 26 C 1.48533 * 111.00245 * 47.52211 * 7 6 5 27 27 O 1.33976 * 125.61753 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46887 * 269.98170 * 1 2 3 29 29 H 1.09003 * 109.46545 * 29.97350 * 1 2 3 30 30 H 1.08994 * 109.47286 * 149.97137 * 1 2 3 31 31 H 1.08001 * 126.16775 * 180.27258 * 4 3 2 32 32 H 1.08998 * 109.47455 * 329.71160 * 6 5 4 33 33 H 1.08998 * 109.47223 * 209.71019 * 6 5 4 34 34 H 1.09000 * 109.91881 * 26.49521 * 8 7 6 35 35 H 1.09002 * 110.08496 * 265.28456 * 8 7 6 36 36 H 1.09002 * 110.31026 * 117.69182 * 9 8 7 37 37 H 1.09000 * 110.30915 * 239.76211 * 9 8 7 38 38 H 1.09000 * 109.46934 * 53.54799 * 12 10 9 39 39 H 1.08992 * 109.47087 * 173.54757 * 12 10 9 40 40 H 0.96998 * 120.00409 * 359.97438 * 13 12 10 41 41 H 1.09000 * 109.46823 * 299.99660 * 16 14 13 42 42 H 1.08999 * 109.46974 * 59.99571 * 16 14 13 43 43 H 0.97002 * 120.00268 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.66452 * 318.71648 * 26 7 6 45 45 H 1.08995 * 110.66642 * 81.67547 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0049 5 6 3.5698 -0.6758 -0.0008 6 6 4.7937 -1.5550 -0.0009 7 7 5.1912 -1.8411 1.3841 8 6 5.7274 -0.6300 2.0424 9 6 5.3146 -0.7012 3.5243 10 6 4.4895 -2.0022 3.6539 11 1 5.1147 -2.8216 4.0088 12 6 3.2907 -1.7930 4.5813 13 7 3.7654 -1.5501 5.9458 14 6 2.8800 -1.3380 6.9395 15 8 1.6903 -1.3478 6.7041 16 6 3.3682 -1.0887 8.3433 17 16 1.9500 -0.8410 9.4403 18 6 2.7872 -0.5794 10.9684 19 1 3.8663 -0.6051 11.0043 20 6 2.0598 -0.3403 12.1261 21 7 0.7446 -0.3095 12.0826 22 14 2.9474 -0.0636 13.7464 23 1 3.8343 1.1217 13.6288 24 1 1.9514 0.1678 14.8232 25 1 3.7622 -1.2608 14.0753 26 6 4.0215 -2.2603 2.1979 27 8 2.2872 -1.0891 -0.0005 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3632 0.8903 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 4.4157 1.3160 0.0103 32 1 5.6081 -1.0442 -0.5146 33 1 4.5695 -2.4897 -0.5149 34 1 5.3032 0.2619 1.5812 35 1 6.8141 -0.6094 1.9603 36 1 6.1979 -0.7483 4.1613 37 1 4.7038 0.1620 3.7888 38 1 2.7125 -0.9345 4.2395 39 1 2.6617 -2.6830 4.5684 40 1 4.7169 -1.5426 6.1342 41 1 3.9464 -1.9473 8.6846 42 1 3.9971 -0.1985 8.3565 43 1 0.2363 -0.1428 12.8917 44 1 3.1499 -1.6500 1.9615 45 1 3.8035 -3.3168 2.0424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753118637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -11.060038 kcal Electronic energy + Delta-G solvation = -26510.663375 eV Core-core repulsion = 22656.026861 eV Total energy + Delta-G solvation = -3854.636514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.76584 -39.88551 -38.84679 -35.35455 -35.11415 -33.28451 -32.42802 -31.80324 -30.22509 -29.12414 -28.40573 -25.86898 -25.44809 -24.53854 -22.66003 -21.88139 -21.06975 -20.58216 -20.21770 -17.90328 -17.51516 -17.32816 -16.56808 -16.35599 -16.03923 -15.33020 -15.24697 -14.89521 -14.84736 -14.80162 -14.38988 -13.90617 -13.69584 -13.57250 -13.41307 -13.15837 -13.12613 -12.83255 -12.62087 -12.55967 -12.19162 -12.00940 -11.85157 -11.64019 -11.45686 -11.18876 -11.04538 -11.03634 -10.89106 -10.86535 -10.76546 -9.82551 -9.41822 -9.23234 -9.06369 -8.98466 -8.89241 -8.24020 -6.50061 -6.21398 -3.92109 1.02521 2.26343 2.31686 3.01298 3.09846 3.23571 3.27257 3.30327 3.48133 3.68910 3.73046 4.13874 4.20664 4.27465 4.32808 4.48522 4.61542 4.64066 4.84509 4.98482 5.00758 5.04187 5.07045 5.07962 5.13595 5.20702 5.22189 5.30422 5.35907 5.45991 5.52996 5.53832 5.60773 5.62042 5.71228 5.82124 5.89319 5.94826 5.96407 6.13721 6.30982 6.37314 6.60282 7.37424 7.59285 7.70209 8.35107 8.60994 9.23680 10.85999 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.002054 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.129772 B =13625.645675 C =14484.818311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.195 3.805 3 N -0.485 5.485 4 C -0.029 4.029 5 C -0.085 4.085 6 C 0.129 3.871 7 N -0.500 5.500 8 C 0.026 3.974 9 C -0.129 4.129 10 C -0.102 4.102 11 H 0.093 0.907 12 C 0.132 3.868 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.040 3.960 27 O -0.198 6.198 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.056 0.944 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 -2.513 -27.833 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.012 4.012 3 N -0.214 5.214 4 C -0.168 4.168 5 C -0.139 4.139 6 C 0.000 4.000 7 N -0.222 5.222 8 C -0.101 4.101 9 C -0.167 4.167 10 C -0.121 4.121 11 H 0.111 0.889 12 C 0.008 3.992 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.088 4.088 27 O -0.085 6.085 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.198 0.802 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.629 -2.361 -28.164 29.274 hybrid contribution 2.143 0.303 1.378 2.566 sum 9.772 -2.058 -26.785 28.586 Atomic orbital electron populations 1.20322 0.81182 1.05127 1.05195 1.26433 0.96622 0.78711 0.99455 1.70481 1.01990 1.30306 1.18670 1.23135 0.95217 0.92913 1.05576 1.24440 0.84523 0.96321 1.08661 1.21091 0.88524 0.98007 0.92352 1.65141 1.26877 1.29344 1.00857 1.23020 1.00941 0.91874 0.94288 1.22502 1.00458 0.97870 0.95845 1.22343 0.96668 0.98675 0.94445 0.88887 1.21195 0.95256 1.01533 0.81261 1.45954 1.09941 1.75444 1.07833 1.20322 0.86228 0.75484 0.86245 1.90701 1.16082 1.48883 1.83565 1.23526 1.06831 1.04621 0.95379 1.85396 1.04456 1.93148 1.00378 1.22826 0.95009 1.56729 0.93860 0.90979 1.24994 0.94941 0.94673 0.98980 1.70006 1.05103 1.45956 1.29245 0.86222 0.79081 0.78859 0.81324 1.19938 1.20806 1.19932 1.23347 0.92107 1.01835 0.91530 1.84477 1.16544 1.37804 1.69637 0.88475 0.88022 0.89257 0.80234 0.87303 0.88417 0.92945 0.89693 0.90442 0.90868 0.91922 0.91425 0.76819 0.89207 0.89258 0.92122 0.92627 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.00 16 2 C 0.19 1.93 8.34 -12.95 -0.11 1.83 16 3 N -0.48 -5.58 11.29 -11.10 -0.13 -5.70 16 4 C -0.03 -0.27 10.38 -17.78 -0.18 -0.46 16 5 C -0.08 -0.73 4.79 -35.69 -0.17 -0.90 16 6 C 0.13 0.81 6.04 -4.97 -0.03 0.78 16 7 N -0.50 -3.70 5.54 -231.79 -1.28 -4.98 16 8 C 0.03 0.18 6.46 -2.75 -0.02 0.17 16 9 C -0.13 -1.02 6.19 -25.37 -0.16 -1.18 16 10 C -0.10 -0.88 3.13 -88.67 -0.28 -1.16 16 11 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 12 C 0.13 1.57 5.01 -4.04 -0.02 1.55 16 13 N -0.74 -9.82 5.40 -60.29 -0.33 -10.15 16 14 C 0.53 10.00 7.85 -10.98 -0.09 9.91 16 15 O -0.52 -11.93 15.86 5.56 0.09 -11.85 16 16 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.04 0.34 5.76 -1.81 -0.01 0.33 16 27 O -0.20 -1.97 9.68 5.33 0.05 -1.92 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.18 1.29 7.58 -52.49 -0.40 0.89 16 32 H 0.11 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.37 5.42 -51.93 -0.28 0.09 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 38 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.13 8.33 -40.82 -0.34 3.79 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.06 0.56 5.33 -51.93 -0.28 0.29 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -36.59 384.35 -9.30 -45.90 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.73 Total: 0.93 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.26 Total: -5.03 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -1.00 Total: -46.38 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.14 Total: -13.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.59 -9.30 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753118637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.836 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds