Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46744 * 2 1 4 4 C 1.53006 * 109.47128 * 240.00301 * 2 1 3 5 5 C 1.53000 * 109.46943 * 291.83378 * 4 2 1 6 6 H 1.08996 * 109.47040 * 185.10356 * 5 4 2 7 7 N 1.46498 * 109.47092 * 305.09972 * 5 4 2 8 8 C 1.34775 * 120.00316 * 272.41477 * 7 5 4 9 9 O 1.21283 * 119.99736 * 5.19151 * 8 7 5 10 10 C 1.50699 * 120.00405 * 185.18526 * 8 7 5 11 11 C 1.52999 * 109.47298 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47095 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99647 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99514 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47017 * 90.00610 * 16 14 12 18 18 H 1.48501 * 109.46550 * 210.00176 * 16 14 12 19 19 H 1.48494 * 109.47307 * 330.00230 * 16 14 12 20 20 C 1.50696 * 109.47221 * 65.09999 * 5 4 2 21 21 O 1.21286 * 120.00084 * 241.24134 * 20 5 4 22 22 N 1.34781 * 120.00212 * 61.24747 * 20 5 4 23 23 C 1.38997 * 120.00122 * 180.02562 * 22 20 5 24 24 N 1.29624 * 124.94773 * 359.68972 * 23 22 20 25 25 C 1.31989 * 116.91699 * 179.77551 * 24 23 22 26 26 C 1.33441 * 114.57160 * 0.51394 * 25 24 23 27 27 S 1.70975 * 124.94269 * 179.97438 * 23 22 20 28 28 H 1.08998 * 109.47263 * 74.70708 * 1 2 3 29 29 H 1.08999 * 109.46800 * 194.70764 * 1 2 3 30 30 H 1.08997 * 109.46943 * 314.70447 * 1 2 3 31 31 H 1.08992 * 109.47287 * 119.99863 * 2 1 3 32 32 H 1.09002 * 109.47365 * 60.00595 * 3 2 1 33 33 H 1.09002 * 109.46589 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47487 * 299.99885 * 3 2 1 35 35 H 1.08999 * 109.46764 * 51.83197 * 4 2 1 36 36 H 1.08990 * 109.47415 * 171.83057 * 4 2 1 37 37 H 0.97005 * 119.99929 * 92.41176 * 7 5 4 38 38 H 1.09001 * 109.47218 * 300.00452 * 10 8 7 39 39 H 1.09000 * 109.46437 * 60.00361 * 10 8 7 40 40 H 1.08992 * 109.47319 * 300.00438 * 11 10 8 41 41 H 1.09001 * 109.46555 * 60.00450 * 11 10 8 42 42 H 0.96999 * 119.99397 * 180.02562 * 15 14 12 43 43 H 0.96998 * 119.99525 * 359.97438 * 22 20 5 44 44 H 1.08004 * 122.71084 * 180.22818 * 25 24 23 45 45 H 1.07994 * 125.97158 * 179.73447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.7042 -2.2107 -1.1511 6 1 2.1458 -2.7391 -1.9960 7 7 2.2436 -2.7515 0.0990 8 6 3.5077 -3.2168 0.1420 9 8 4.2293 -3.1022 -0.8260 10 6 4.0247 -3.8793 1.3929 11 6 5.4761 -4.3130 1.1779 12 6 5.9928 -4.9761 2.4286 13 1 5.3501 -5.0783 3.2905 14 6 7.2861 -5.4522 2.4725 15 7 7.7369 -6.0313 3.5639 16 14 8.3974 -5.2759 0.9814 17 1 9.1327 -3.9882 1.0615 18 1 9.3681 -6.3993 0.9521 19 1 7.5748 -5.3002 -0.2547 20 6 0.2082 -2.3908 -1.1722 21 8 -0.3549 -2.8985 -0.2256 22 7 -0.5041 -1.9878 -2.2431 23 6 -1.8840 -2.1534 -2.2623 24 7 -2.5812 -2.6870 -1.3087 25 6 -3.8861 -2.7614 -1.4921 26 6 -4.3107 -2.2769 -2.6607 27 16 -2.9082 -1.6893 -3.5503 28 1 -0.3634 0.2710 -0.9912 29 1 -0.3633 -0.9940 0.2609 30 1 -0.3633 0.7229 0.7304 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.5624 -0.2985 -2.1332 36 1 3.1201 -0.5965 -1.3254 37 1 1.6909 -2.7746 0.8958 38 1 3.9746 -3.1758 2.2240 39 1 3.4145 -4.7536 1.6197 40 1 5.5257 -5.0166 0.3470 41 1 6.0865 -3.4390 0.9508 42 1 8.6468 -6.3659 3.5949 43 1 -0.0537 -1.5815 -3.0001 44 1 -4.5556 -3.1846 -0.7577 45 1 -5.3351 -2.2495 -3.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292017297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -23.274566 kcal Electronic energy + Delta-G solvation = -27400.516983 eV Core-core repulsion = 23545.350808 eV Total energy + Delta-G solvation = -3855.166176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40590 -39.84462 -38.84629 -36.69278 -35.43046 -33.96241 -33.47147 -31.43718 -30.40784 -29.32760 -27.38303 -26.12644 -25.98716 -24.27649 -22.37550 -21.37335 -20.53842 -19.80672 -19.51604 -19.28784 -17.61487 -16.97195 -16.72319 -16.51397 -15.87025 -15.74799 -15.43775 -15.15868 -14.86353 -14.72878 -14.10712 -14.02398 -13.63401 -13.58090 -13.46254 -13.05251 -12.77508 -12.58095 -12.54487 -12.28203 -12.01794 -11.95519 -11.43771 -11.40864 -11.08659 -10.95652 -10.84784 -10.66287 -10.50383 -10.16412 -10.04174 -9.78704 -9.72491 -9.68506 -9.31609 -9.16544 -9.02475 -8.70524 -8.49289 -6.01232 -3.99889 0.33468 0.54883 1.24656 2.09041 2.32251 2.69738 3.04496 3.32598 3.38357 3.44998 3.55267 3.85927 4.42611 4.47620 4.51853 4.57858 4.71501 4.86125 5.05530 5.11869 5.13269 5.28550 5.34024 5.40727 5.43428 5.44455 5.56388 5.65068 5.68727 5.82958 5.85458 5.98563 6.09734 6.11997 6.15215 6.16410 6.34968 6.56379 6.70567 7.36403 7.38480 7.44222 7.66899 7.71102 7.80314 8.49412 8.59048 9.02324 9.61522 11.11674 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002454 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.436871 B =11408.107485 C =11988.788736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.124 4.124 5 C 0.133 3.867 6 H 0.118 0.882 7 N -0.722 5.722 8 C 0.517 3.483 9 O -0.539 6.539 10 C -0.121 4.121 11 C 0.003 3.997 12 C -0.524 4.524 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.519 3.481 21 O -0.461 6.461 22 N -0.635 5.635 23 C 0.277 3.723 24 N -0.475 5.475 25 C 0.071 3.929 26 C -0.277 4.277 27 S 0.115 5.885 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.423 0.577 44 H 0.180 0.820 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.840 14.789 -16.163 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.163 4.163 5 C 0.023 3.977 6 H 0.135 0.865 7 N -0.378 5.378 8 C 0.306 3.694 9 O -0.414 6.414 10 C -0.161 4.161 11 C -0.035 4.035 12 C -0.562 4.562 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.185 1.185 20 C 0.303 3.697 21 O -0.329 6.329 22 N -0.287 5.287 23 C -0.092 4.092 24 N -0.196 5.196 25 C -0.080 4.080 26 C -0.417 4.417 27 S 0.364 5.636 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.246 0.754 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.261 0.739 44 H 0.197 0.803 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -24.020 14.641 -16.537 32.631 hybrid contribution -0.107 -0.084 -0.135 0.192 sum -24.127 14.557 -16.672 32.741 Atomic orbital electron populations 1.22380 0.95388 1.03919 1.01409 1.21133 0.95522 0.96493 0.98584 1.21820 1.01252 0.95570 1.01548 1.22130 1.03687 0.91987 0.98482 1.20696 0.88320 0.96786 0.91899 0.86462 1.45973 1.15202 1.64839 1.11827 1.21601 0.79982 0.76512 0.91258 1.90647 1.56243 1.56542 1.38008 1.21681 1.00892 1.00360 0.93172 1.19369 0.89617 0.96771 0.97771 1.21119 0.98340 1.37841 0.98942 0.90890 1.24982 0.97956 0.94502 0.95861 1.69917 1.17037 1.39867 1.27405 0.86788 0.80634 0.77699 0.84372 1.20269 1.21488 1.18543 1.21020 0.89784 0.77024 0.81878 1.90832 1.70902 1.38270 1.32934 1.43179 1.02078 1.61558 1.21862 1.23766 0.90281 1.00430 0.94740 1.66571 1.05943 1.19295 1.27839 1.21721 0.89944 0.99666 0.96711 1.26836 1.02812 1.12595 0.99483 1.84008 0.98927 1.60456 1.20217 0.93296 0.90464 0.92604 0.90251 0.92639 0.92404 0.92940 0.91067 0.89181 0.75388 0.89453 0.89291 0.95838 0.96244 0.92737 0.73870 0.80319 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 7.86 37.16 0.29 -1.39 16 2 C -0.10 -0.95 2.80 -90.62 -0.25 -1.20 16 3 C -0.14 -1.25 9.13 37.16 0.34 -0.91 16 4 C -0.12 -1.14 4.76 -26.73 -0.13 -1.27 16 5 C 0.13 1.47 2.68 -69.09 -0.18 1.28 16 6 H 0.12 1.31 7.57 -51.93 -0.39 0.92 16 7 N -0.72 -9.81 3.86 -54.94 -0.21 -10.02 16 8 C 0.52 9.08 7.81 -10.99 -0.09 8.99 16 9 O -0.54 -11.05 15.66 5.55 0.09 -10.96 16 10 C -0.12 -2.35 5.64 -27.88 -0.16 -2.51 16 11 C 0.00 0.07 3.33 -27.88 -0.09 -0.03 16 12 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 16 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 20 C 0.52 5.72 4.35 -10.99 -0.05 5.67 16 21 O -0.46 -6.67 12.85 5.55 0.07 -6.60 16 22 N -0.63 -5.25 4.66 -13.07 -0.06 -5.31 16 23 C 0.28 2.62 8.02 -87.35 -0.70 1.92 16 24 N -0.48 -5.56 8.65 -15.12 -0.13 -5.69 16 25 C 0.07 0.61 11.34 -19.16 -0.22 0.39 16 26 C -0.28 -1.77 11.35 29.05 0.33 -1.44 16 27 S 0.11 0.73 23.22 -107.50 -2.50 -1.77 16 28 H 0.05 0.42 7.45 -51.93 -0.39 0.03 16 29 H 0.08 0.92 4.53 -51.93 -0.23 0.68 16 30 H 0.05 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.08 0.88 7.09 -51.93 -0.37 0.52 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.45 7.36 -51.93 -0.38 0.07 16 36 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.41 5.26 7.68 -40.82 -0.31 4.95 16 38 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.42 2.00 8.26 -40.82 -0.34 1.66 16 44 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -36.64 379.22 -8.82 -45.46 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.57 Total: 2.65 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.34 Total: -3.96 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.37 Total: -48.41 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.16 Total: -17.56 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.50 Total: -1.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.64 -8.82 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292017297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.189 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds