Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46744 * 2 1 4 4 C 1.53006 * 109.47128 * 240.00301 * 2 1 3 5 5 C 1.53000 * 109.46943 * 291.83378 * 4 2 1 6 6 H 1.08996 * 109.47040 * 185.10356 * 5 4 2 7 7 N 1.46498 * 109.47092 * 305.09972 * 5 4 2 8 8 C 1.34775 * 120.00316 * 272.41477 * 7 5 4 9 9 O 1.21283 * 119.99736 * 5.19151 * 8 7 5 10 10 C 1.50699 * 120.00405 * 185.18526 * 8 7 5 11 11 C 1.52999 * 109.47298 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47095 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99647 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99514 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47017 * 90.00610 * 16 14 12 18 18 H 1.48501 * 109.46550 * 210.00176 * 16 14 12 19 19 H 1.48494 * 109.47307 * 330.00230 * 16 14 12 20 20 C 1.50696 * 109.47221 * 65.09999 * 5 4 2 21 21 O 1.21286 * 120.00084 * 241.24134 * 20 5 4 22 22 N 1.34781 * 120.00212 * 61.24747 * 20 5 4 23 23 C 1.38997 * 120.00122 * 180.02562 * 22 20 5 24 24 N 1.29624 * 124.94773 * 359.68972 * 23 22 20 25 25 C 1.31989 * 116.91699 * 179.77551 * 24 23 22 26 26 C 1.33441 * 114.57160 * 0.51394 * 25 24 23 27 27 S 1.70975 * 124.94269 * 179.97438 * 23 22 20 28 28 H 1.08998 * 109.47263 * 74.70708 * 1 2 3 29 29 H 1.08999 * 109.46800 * 194.70764 * 1 2 3 30 30 H 1.08997 * 109.46943 * 314.70447 * 1 2 3 31 31 H 1.08992 * 109.47287 * 119.99863 * 2 1 3 32 32 H 1.09002 * 109.47365 * 60.00595 * 3 2 1 33 33 H 1.09002 * 109.46589 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47487 * 299.99885 * 3 2 1 35 35 H 1.08999 * 109.46764 * 51.83197 * 4 2 1 36 36 H 1.08990 * 109.47415 * 171.83057 * 4 2 1 37 37 H 0.97005 * 119.99929 * 92.41176 * 7 5 4 38 38 H 1.09001 * 109.47218 * 300.00452 * 10 8 7 39 39 H 1.09000 * 109.46437 * 60.00361 * 10 8 7 40 40 H 1.08992 * 109.47319 * 300.00438 * 11 10 8 41 41 H 1.09001 * 109.46555 * 60.00450 * 11 10 8 42 42 H 0.96999 * 119.99397 * 180.02562 * 15 14 12 43 43 H 0.96998 * 119.99525 * 359.97438 * 22 20 5 44 44 H 1.08004 * 122.71084 * 180.22818 * 25 24 23 45 45 H 1.07994 * 125.97158 * 179.73447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.7042 -2.2107 -1.1511 6 1 2.1458 -2.7391 -1.9960 7 7 2.2436 -2.7515 0.0990 8 6 3.5077 -3.2168 0.1420 9 8 4.2293 -3.1022 -0.8260 10 6 4.0247 -3.8793 1.3929 11 6 5.4761 -4.3130 1.1779 12 6 5.9928 -4.9761 2.4286 13 1 5.3501 -5.0783 3.2905 14 6 7.2861 -5.4522 2.4725 15 7 7.7369 -6.0313 3.5639 16 14 8.3974 -5.2759 0.9814 17 1 9.1327 -3.9882 1.0615 18 1 9.3681 -6.3993 0.9521 19 1 7.5748 -5.3002 -0.2547 20 6 0.2082 -2.3908 -1.1722 21 8 -0.3549 -2.8985 -0.2256 22 7 -0.5041 -1.9878 -2.2431 23 6 -1.8840 -2.1534 -2.2623 24 7 -2.5812 -2.6870 -1.3087 25 6 -3.8861 -2.7614 -1.4921 26 6 -4.3107 -2.2769 -2.6607 27 16 -2.9082 -1.6893 -3.5503 28 1 -0.3634 0.2710 -0.9912 29 1 -0.3633 -0.9940 0.2609 30 1 -0.3633 0.7229 0.7304 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.5624 -0.2985 -2.1332 36 1 3.1201 -0.5965 -1.3254 37 1 1.6909 -2.7746 0.8958 38 1 3.9746 -3.1758 2.2240 39 1 3.4145 -4.7536 1.6197 40 1 5.5257 -5.0166 0.3470 41 1 6.0865 -3.4390 0.9508 42 1 8.6468 -6.3659 3.5949 43 1 -0.0537 -1.5815 -3.0001 44 1 -4.5556 -3.1846 -0.7577 45 1 -5.3351 -2.2495 -3.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292017297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -48.441203 kcal Electronic energy + Delta-G solvation = -27401.608291 eV Core-core repulsion = 23545.350808 eV Total energy + Delta-G solvation = -3856.257483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.25434 -40.79134 -39.90162 -37.58074 -36.20534 -35.55790 -35.02006 -33.35934 -31.36920 -30.13282 -28.12017 -27.92033 -26.69632 -25.15650 -23.50600 -22.65180 -21.73434 -20.64683 -20.48692 -20.09147 -19.24174 -18.17068 -17.73899 -17.39478 -16.98337 -16.81073 -16.51548 -16.19807 -15.99384 -15.72097 -15.54078 -15.02877 -14.88808 -14.63739 -14.51890 -14.16469 -14.07424 -13.92456 -13.43304 -13.37342 -13.22548 -12.88501 -12.76091 -12.47124 -12.14361 -12.10958 -11.96492 -11.86399 -11.75388 -11.63925 -11.46027 -11.39812 -11.31116 -10.84946 -10.77239 -10.40662 -10.27958 -10.14867 -9.30131 -8.30382 -6.33894 -0.26237 -0.02335 0.70958 1.31322 1.35108 1.36717 1.51685 1.52428 1.72132 2.04932 2.23743 2.36345 3.05166 3.11078 3.65246 3.75546 3.80918 3.94204 3.99261 4.29372 4.34047 4.40399 4.46604 4.48205 4.57748 4.60057 4.71417 4.75144 4.83480 4.91859 4.94338 4.98510 5.07519 5.19062 5.27516 5.29006 5.37598 5.40990 5.43296 5.45448 5.61711 5.86904 6.24102 6.44591 6.68778 6.72637 7.04127 7.20083 7.31207 8.85558 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002454 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.436871 B =11408.107485 C =11988.788736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.118 4.118 5 C 0.131 3.869 6 H 0.121 0.879 7 N -0.708 5.708 8 C 0.527 3.473 9 O -0.569 6.569 10 C -0.119 4.119 11 C 0.008 3.992 12 C -0.531 4.531 13 H 0.045 0.955 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.943 3.057 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.257 1.257 20 C 0.526 3.474 21 O -0.501 6.501 22 N -0.622 5.622 23 C 0.243 3.757 24 N -0.520 5.520 25 C 0.040 3.960 26 C -0.263 4.263 27 S 0.180 5.820 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.413 0.587 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.012 0.988 41 H 0.015 0.985 42 H 0.267 0.733 43 H 0.439 0.561 44 H 0.189 0.811 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.358 16.580 -19.150 36.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.156 4.156 5 C 0.022 3.978 6 H 0.138 0.862 7 N -0.362 5.362 8 C 0.315 3.685 9 O -0.448 6.448 10 C -0.159 4.159 11 C -0.030 4.030 12 C -0.569 4.569 13 H 0.064 0.936 14 C -0.187 4.187 15 N -0.586 5.586 16 Si 0.767 3.233 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.182 1.182 20 C 0.311 3.689 21 O -0.372 6.372 22 N -0.275 5.275 23 C -0.124 4.124 24 N -0.242 5.242 25 C -0.110 4.110 26 C -0.403 4.403 27 S 0.429 5.571 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.251 0.749 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.281 0.719 44 H 0.205 0.795 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -25.588 16.470 -19.559 36.174 hybrid contribution 0.167 -0.621 0.792 1.020 sum -25.421 15.849 -18.767 35.350 Atomic orbital electron populations 1.22271 0.95181 1.02614 1.02139 1.21096 0.95512 0.97078 0.97940 1.21789 1.00787 0.94859 1.02443 1.22116 1.03153 0.90486 0.99862 1.20890 0.88580 0.98018 0.90319 0.86182 1.45726 1.13842 1.63439 1.13223 1.21008 0.80977 0.76566 0.89941 1.90633 1.57341 1.58171 1.38665 1.21500 0.98023 1.01346 0.94994 1.19203 0.92725 0.95822 0.95217 1.21444 0.98172 1.37695 0.99607 0.93648 1.25872 0.99730 0.94309 0.98804 1.70043 1.17784 1.41227 1.29574 0.85758 0.78705 0.78270 0.80562 1.19137 1.20553 1.18157 1.20833 0.89508 0.76552 0.82006 1.90823 1.71502 1.40299 1.34580 1.42916 1.02037 1.60989 1.21566 1.23967 0.90572 1.01749 0.96120 1.66518 1.07508 1.20313 1.29858 1.21931 0.89400 1.01437 0.98249 1.27318 1.04494 1.10059 0.98467 1.83771 0.97151 1.58632 1.17554 0.91847 0.92539 0.92733 0.92296 0.92614 0.93080 0.91222 0.87407 0.90496 0.74891 0.88156 0.88647 0.96917 0.96704 0.92401 0.71923 0.79468 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.86 71.98 0.57 -2.41 16 2 C -0.10 -1.75 2.80 -10.79 -0.03 -1.78 16 3 C -0.14 -2.20 9.13 71.98 0.66 -1.54 16 4 C -0.12 -1.95 4.76 30.60 0.15 -1.81 16 5 C 0.13 2.76 2.68 44.24 0.12 2.87 16 6 H 0.12 2.53 7.57 -2.39 -0.02 2.51 16 7 N -0.71 -19.04 3.86 -446.11 -1.72 -20.76 16 8 C 0.53 18.36 7.81 87.66 0.68 19.04 16 9 O -0.57 -23.09 15.66 -3.04 -0.05 -23.14 16 10 C -0.12 -4.64 5.64 29.85 0.17 -4.47 16 11 C 0.01 0.41 3.33 29.85 0.10 0.51 16 12 C -0.53 -31.16 9.66 25.60 0.25 -30.91 16 13 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 14 C 0.01 0.61 5.47 84.66 0.46 1.08 16 15 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 16 Si 0.94 46.74 27.47 68.60 1.88 48.63 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 20 C 0.53 11.18 4.35 87.65 0.38 11.56 16 21 O -0.50 -14.62 12.85 -3.05 -0.04 -14.66 16 22 N -0.62 -9.22 4.66 -313.64 -1.46 -10.68 16 23 C 0.24 4.22 8.02 179.21 1.44 5.66 16 24 N -0.52 -11.89 8.65 -201.75 -1.75 -13.63 16 25 C 0.04 0.65 11.34 83.58 0.95 1.60 16 26 C -0.26 -2.65 11.35 66.73 0.76 -1.89 16 27 S 0.18 1.72 23.22 -56.49 -1.31 0.41 16 28 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 29 H 0.06 1.32 4.53 -2.39 -0.01 1.31 16 30 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 31 H 0.06 1.30 7.09 -2.39 -0.02 1.28 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.99 7.36 -2.39 -0.02 0.98 16 36 H 0.08 1.56 8.13 -2.39 -0.02 1.54 16 37 H 0.41 10.70 7.68 -92.70 -0.71 9.99 16 38 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 39 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 41 H 0.01 0.74 7.53 -2.39 -0.02 0.72 16 42 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 43 H 0.44 2.96 8.26 -92.71 -0.77 2.20 16 44 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.21 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -81.07 379.22 1.99 -79.08 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.51 Total: 17.02 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.64 Total: -2.51 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.63 Total: -104.82 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.09 Total: -37.80 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.63 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.31 Total: 0.41 kcal Total: -81.07 1.99 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292017297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.638 kcal (2) G-P(sol) polarization free energy of solvation -81.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds