Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00110 * 2 1 4 4 N 1.46499 * 109.46789 * 125.00131 * 3 2 1 5 5 C 1.46504 * 119.99838 * 261.45783 * 4 3 2 6 6 C 1.50704 * 109.46786 * 270.00328 * 5 4 3 7 7 H 1.08001 * 120.00476 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99520 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99851 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99917 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46886 * 90.00407 * 10 8 6 12 12 H 1.48501 * 109.47067 * 209.99854 * 10 8 6 13 13 H 1.48494 * 109.47429 * 330.00200 * 10 8 6 14 14 C 1.34770 * 119.99926 * 81.46323 * 4 3 2 15 15 O 1.21359 * 119.99873 * 185.65679 * 14 4 3 16 16 C 1.49357 * 120.00271 * 5.65675 * 14 4 3 17 17 O 1.21376 * 119.99596 * 354.45194 * 16 14 4 18 18 N 1.34772 * 120.00022 * 174.45728 * 16 14 4 19 19 C 1.46518 * 124.96023 * 354.68939 * 18 16 14 20 20 C 1.53725 * 105.22919 * 180.02562 * 19 18 16 21 21 C 1.51277 * 104.57073 * 0.02562 * 20 19 18 22 22 C 1.38340 * 130.79625 * 180.02562 * 21 20 19 23 23 C 1.37923 * 120.35785 * 179.71885 * 22 21 20 24 24 C 1.39676 * 119.69105 * 0.52743 * 23 22 21 25 25 C 1.43200 * 120.04930 * 179.77367 * 24 23 22 26 26 N 7.49680 * 120.43081 * 246.17951 * 2 1 3 27 27 C 1.39236 * 119.90194 * 359.49273 * 24 23 22 28 28 C 1.38756 * 108.49534 * 359.97438 * 21 20 19 29 29 H 1.07997 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99931 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00206 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46816 * 4.99855 * 3 2 1 33 33 H 1.09000 * 109.47050 * 245.00426 * 3 2 1 34 34 H 1.09001 * 109.47144 * 30.00073 * 5 4 3 35 35 H 1.09001 * 109.46792 * 150.00474 * 5 4 3 36 36 H 0.96995 * 120.00040 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.29241 * 61.09817 * 19 18 16 38 38 H 1.08999 * 110.37352 * 299.02266 * 19 18 16 39 39 H 1.08998 * 110.41872 * 241.22900 * 20 19 18 40 40 H 1.08993 * 110.41368 * 118.76965 * 20 19 18 41 41 H 1.07997 * 119.81618 * 359.96928 * 22 21 20 42 42 H 1.08006 * 120.15209 * 180.27041 * 23 22 21 43 43 H 1.08003 * 119.91987 * 180.25664 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6265 2.0310 2.3654 6 6 3.0800 3.4658 2.2837 7 1 3.5903 3.8215 1.4009 8 6 2.8433 4.3245 3.3363 9 7 3.2386 5.5768 3.2649 10 14 1.9600 3.7095 4.8629 11 1 2.9552 3.1898 5.8350 12 1 1.2020 4.8273 5.4804 13 1 1.0206 2.6225 4.4872 14 6 4.1875 0.7133 1.0371 15 8 4.9147 0.6468 2.0064 16 6 4.6154 0.1097 -0.2603 17 8 3.8488 0.0868 -1.2011 18 7 5.8526 -0.4096 -0.3864 19 6 6.8996 -0.3423 0.6363 20 6 8.1088 -1.0682 0.0247 21 6 7.6376 -1.5054 -1.3447 22 6 8.2918 -2.1993 -2.3468 23 6 7.6441 -2.4930 -3.5285 24 6 6.3241 -2.0767 -3.7160 25 6 5.6459 -2.3733 -4.9418 26 7 5.1071 -2.6107 -5.9134 27 6 5.6667 -1.3780 -2.7069 28 6 6.3242 -1.0898 -1.5116 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4027 -0.9314 34 1 1.5444 1.9986 2.4930 35 1 3.1073 1.5457 3.2148 36 1 3.0724 6.1808 4.0054 37 1 6.5741 -0.8495 1.5446 38 1 7.1517 0.6957 0.8535 39 1 8.3778 -1.9345 0.6291 40 1 8.9556 -0.3878 -0.0643 41 1 9.3139 -2.5162 -2.2013 42 1 8.1567 -3.0387 -4.3070 43 1 4.6446 -1.0596 -2.8499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293204342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = 43.629346 kcal Electronic energy + Delta-G solvation = -28767.727474 eV Core-core repulsion = 24780.018518 eV Total energy + Delta-G solvation = -3987.708956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59672 -39.89028 -38.11836 -37.53015 -36.31059 -35.61002 -33.30105 -32.74174 -32.20195 -30.51385 -29.76287 -28.64773 -26.11367 -25.00894 -24.06605 -23.26532 -22.37566 -21.34864 -20.08202 -19.09289 -18.52870 -17.30328 -17.07299 -16.82487 -16.50499 -16.00330 -15.80656 -15.30014 -15.02610 -14.70852 -14.36455 -14.17435 -14.14204 -14.10606 -13.88525 -13.29871 -13.13238 -13.06275 -12.99566 -12.57618 -12.49808 -12.42963 -12.16876 -12.07436 -11.84333 -11.77292 -11.47592 -11.27366 -11.01390 -10.88332 -10.63428 -10.46252 -10.23248 -9.65330 -9.27141 -9.18530 -8.94691 -8.70061 -8.18748 -7.94901 -6.19938 -4.21057 0.40610 0.85920 1.72702 2.18290 2.43179 2.51704 2.67786 3.22045 3.28332 3.29823 3.41130 3.48827 3.62851 3.73809 4.15959 4.26838 4.29525 4.46932 4.63994 4.81837 4.88500 4.93617 5.06660 5.12674 5.21043 5.40160 5.44048 5.51505 5.62919 5.73605 5.74988 5.78526 5.94039 5.96886 6.03367 6.07528 6.23288 6.43822 6.51702 6.72706 6.79511 6.84143 6.96878 7.08368 7.24496 7.43043 7.55299 7.89943 8.26383 8.45889 8.81983 9.38286 10.92865 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.003214 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.719598 B = 8708.579067 C = 9961.656068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.119 3.881 4 N -0.548 5.548 5 C 0.214 3.786 6 C -0.537 4.537 7 H 0.076 0.924 8 C 0.077 3.923 9 N -0.892 5.892 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.504 3.496 15 O -0.517 6.517 16 C 0.517 3.483 17 O -0.492 6.492 18 N -0.533 5.533 19 C 0.107 3.893 20 C -0.094 4.094 21 C -0.102 4.102 22 C -0.080 4.080 23 C -0.093 4.093 24 C -0.006 4.006 25 C 0.260 3.740 26 N -0.417 5.417 27 C -0.084 4.084 28 C 0.149 3.851 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 -16.212 -8.017 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.003 4.003 4 N -0.278 5.278 5 C 0.095 3.905 6 C -0.575 4.575 7 H 0.095 0.905 8 C -0.127 4.127 9 N -0.530 5.530 10 Si 0.701 3.299 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.285 3.715 15 O -0.394 6.394 16 C 0.304 3.696 17 O -0.366 6.366 18 N -0.256 5.256 19 C -0.015 4.015 20 C -0.131 4.131 21 C -0.106 4.106 22 C -0.099 4.099 23 C -0.115 4.115 24 C -0.010 4.010 25 C -0.056 4.056 26 N -0.092 5.092 27 C -0.108 4.108 28 C 0.053 3.947 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.849 -16.302 -9.273 20.331 hybrid contribution -0.339 0.032 1.203 1.250 sum 7.509 -16.270 -8.070 19.653 Atomic orbital electron populations 1.23788 0.95763 1.01690 1.01806 1.23255 0.95996 0.98737 0.98729 1.21187 0.93056 0.95316 0.90767 1.47833 1.14047 1.48914 1.17036 1.19901 0.96270 0.92904 0.81455 1.21252 1.39309 0.92165 1.04772 0.90542 1.24820 0.95073 0.94645 0.98128 1.69879 1.46249 1.04453 1.32419 0.86871 0.80412 0.78880 0.83715 1.19742 1.20901 1.18912 1.19344 0.83526 0.81268 0.87398 1.90718 1.52558 1.58399 1.37749 1.20851 0.80348 0.78403 0.90046 1.90645 1.51172 1.53784 1.41012 1.45691 1.12941 1.51544 1.15432 1.22392 0.84693 1.03462 0.90920 1.21343 0.98523 1.01262 0.91943 1.20383 0.93264 0.99932 0.97016 1.20274 1.00111 0.97892 0.91575 1.21010 0.92551 0.99953 0.97952 1.15596 0.93725 1.03132 0.88560 1.25578 0.93455 0.93680 0.92854 1.81254 1.08099 1.08638 1.11210 1.20910 1.01420 0.98229 0.90207 1.18163 0.93134 0.95111 0.88253 0.88309 0.88806 0.88049 0.89366 0.87075 0.94357 0.93933 0.92341 0.88043 0.88671 0.88417 0.88381 0.84426 0.84551 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 14.32 29.02 0.42 -2.16 16 2 C -0.15 -2.25 8.90 -36.02 -0.32 -2.57 16 3 C 0.12 2.06 5.47 -5.19 -0.03 2.03 16 4 N -0.55 -11.06 2.47 -176.97 -0.44 -11.50 16 5 C 0.21 4.97 4.23 -5.19 -0.02 4.95 16 6 C -0.54 -14.65 9.94 -34.44 -0.34 -14.99 16 7 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 10 Si 0.87 20.53 27.47 -169.99 -4.67 15.87 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 14 C 0.50 9.71 7.57 -11.63 -0.09 9.62 16 15 O -0.52 -10.73 13.68 5.49 0.08 -10.66 16 16 C 0.52 8.42 7.73 -11.63 -0.09 8.33 16 17 O -0.49 -8.07 10.36 5.47 0.06 -8.02 16 18 N -0.53 -7.21 3.12 -113.47 -0.35 -7.57 16 19 C 0.11 1.20 5.71 -3.65 -0.02 1.18 16 20 C -0.09 -0.69 6.94 -27.22 -0.19 -0.88 16 21 C -0.10 -0.89 6.23 -104.11 -0.65 -1.54 16 22 C -0.08 -0.52 10.02 -39.66 -0.40 -0.92 16 23 C -0.09 -0.66 9.76 -39.16 -0.38 -1.04 16 24 C -0.01 -0.06 5.72 -107.06 -0.61 -0.67 16 25 C 0.26 2.94 15.32 -22.47 -0.34 2.60 16 26 N -0.42 -5.61 18.54 41.84 0.78 -4.83 16 27 C -0.08 -0.97 9.16 -38.77 -0.35 -1.33 16 28 C 0.15 1.74 6.61 -83.64 -0.55 1.18 16 29 H 0.10 1.27 7.84 -52.49 -0.41 0.85 16 30 H 0.09 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.10 1.54 7.76 -52.49 -0.41 1.13 16 32 H 0.09 1.53 7.66 -51.93 -0.40 1.13 16 33 H 0.11 1.91 5.41 -51.93 -0.28 1.63 16 34 H 0.04 0.86 7.13 -51.93 -0.37 0.49 16 35 H 0.04 1.03 6.78 -51.93 -0.35 0.67 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.10 1.18 7.25 -51.93 -0.38 0.80 16 38 H 0.10 1.15 7.99 -51.93 -0.41 0.74 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.15 1.94 6.27 -52.48 -0.33 1.61 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -32.09 370.37 -7.32 -39.41 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.04 Total: 1.56 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -4.08 Total: 5.82 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.76 Total: -49.55 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.13 Total: -18.68 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.09 -7.32 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293204342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.036 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds