Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00110 * 2 1 4 4 N 1.46499 * 109.46789 * 125.00131 * 3 2 1 5 5 C 1.46504 * 119.99838 * 261.45783 * 4 3 2 6 6 C 1.50704 * 109.46786 * 270.00328 * 5 4 3 7 7 H 1.08001 * 120.00476 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99520 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99851 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99917 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46886 * 90.00407 * 10 8 6 12 12 H 1.48501 * 109.47067 * 209.99854 * 10 8 6 13 13 H 1.48494 * 109.47429 * 330.00200 * 10 8 6 14 14 C 1.34770 * 119.99926 * 81.46323 * 4 3 2 15 15 O 1.21359 * 119.99873 * 185.65679 * 14 4 3 16 16 C 1.49357 * 120.00271 * 5.65675 * 14 4 3 17 17 O 1.21376 * 119.99596 * 354.45194 * 16 14 4 18 18 N 1.34772 * 120.00022 * 174.45728 * 16 14 4 19 19 C 1.46518 * 124.96023 * 354.68939 * 18 16 14 20 20 C 1.53725 * 105.22919 * 180.02562 * 19 18 16 21 21 C 1.51277 * 104.57073 * 0.02562 * 20 19 18 22 22 C 1.38340 * 130.79625 * 180.02562 * 21 20 19 23 23 C 1.37923 * 120.35785 * 179.71885 * 22 21 20 24 24 C 1.39676 * 119.69105 * 0.52743 * 23 22 21 25 25 C 1.43200 * 120.04930 * 179.77367 * 24 23 22 26 26 N 7.49680 * 120.43081 * 246.17951 * 2 1 3 27 27 C 1.39236 * 119.90194 * 359.49273 * 24 23 22 28 28 C 1.38756 * 108.49534 * 359.97438 * 21 20 19 29 29 H 1.07997 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99931 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00206 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46816 * 4.99855 * 3 2 1 33 33 H 1.09000 * 109.47050 * 245.00426 * 3 2 1 34 34 H 1.09001 * 109.47144 * 30.00073 * 5 4 3 35 35 H 1.09001 * 109.46792 * 150.00474 * 5 4 3 36 36 H 0.96995 * 120.00040 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.29241 * 61.09817 * 19 18 16 38 38 H 1.08999 * 110.37352 * 299.02266 * 19 18 16 39 39 H 1.08998 * 110.41872 * 241.22900 * 20 19 18 40 40 H 1.08993 * 110.41368 * 118.76965 * 20 19 18 41 41 H 1.07997 * 119.81618 * 359.96928 * 22 21 20 42 42 H 1.08006 * 120.15209 * 180.27041 * 23 22 21 43 43 H 1.08003 * 119.91987 * 180.25664 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6265 2.0310 2.3654 6 6 3.0800 3.4658 2.2837 7 1 3.5903 3.8215 1.4009 8 6 2.8433 4.3245 3.3363 9 7 3.2386 5.5768 3.2649 10 14 1.9600 3.7095 4.8629 11 1 2.9552 3.1898 5.8350 12 1 1.2020 4.8273 5.4804 13 1 1.0206 2.6225 4.4872 14 6 4.1875 0.7133 1.0371 15 8 4.9147 0.6468 2.0064 16 6 4.6154 0.1097 -0.2603 17 8 3.8488 0.0868 -1.2011 18 7 5.8526 -0.4096 -0.3864 19 6 6.8996 -0.3423 0.6363 20 6 8.1088 -1.0682 0.0247 21 6 7.6376 -1.5054 -1.3447 22 6 8.2918 -2.1993 -2.3468 23 6 7.6441 -2.4930 -3.5285 24 6 6.3241 -2.0767 -3.7160 25 6 5.6459 -2.3733 -4.9418 26 7 5.1071 -2.6107 -5.9134 27 6 5.6667 -1.3780 -2.7069 28 6 6.3242 -1.0898 -1.5116 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4027 -0.9314 34 1 1.5444 1.9986 2.4930 35 1 3.1073 1.5457 3.2148 36 1 3.0724 6.1808 4.0054 37 1 6.5741 -0.8495 1.5446 38 1 7.1517 0.6957 0.8535 39 1 8.3778 -1.9345 0.6291 40 1 8.9556 -0.3878 -0.0643 41 1 9.3139 -2.5162 -2.2013 42 1 8.1567 -3.0387 -4.3070 43 1 4.6446 -1.0596 -2.8499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293204342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = 24.853745 kcal Electronic energy + Delta-G solvation = -28768.541645 eV Core-core repulsion = 24780.018518 eV Total energy + Delta-G solvation = -3988.523127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.63447 -41.07083 -39.38679 -38.55085 -37.54158 -36.71676 -35.09275 -33.90337 -33.53129 -31.36863 -30.54202 -30.47875 -27.42055 -26.45636 -24.92067 -24.64804 -23.11279 -22.68855 -21.29882 -20.26010 -19.55546 -19.14210 -18.48670 -18.07601 -17.59382 -17.32004 -16.78576 -16.35913 -16.29764 -16.07203 -15.72967 -15.42199 -15.10710 -15.04747 -14.84284 -14.73208 -14.42312 -14.31249 -14.03790 -13.89170 -13.64869 -13.41665 -13.31359 -13.23137 -13.10249 -12.90756 -12.76804 -12.53871 -12.38673 -12.23885 -12.09215 -11.94900 -11.75187 -11.30871 -10.84580 -10.56764 -10.23851 -9.87982 -9.67069 -8.97665 -8.35576 -6.42964 -0.36881 -0.06874 0.62044 1.01162 1.32530 1.36398 1.37984 1.47361 1.56130 1.81384 2.10013 2.30343 2.31884 2.78819 2.82378 2.97523 3.06355 3.47886 3.54614 3.95525 3.99019 4.11666 4.13506 4.15550 4.20986 4.33250 4.46368 4.65993 4.69181 4.75966 4.79812 4.89058 4.98013 4.98845 5.03758 5.04951 5.21249 5.28288 5.30598 5.33581 5.38234 5.65433 5.77150 5.83611 5.89277 6.09842 6.23037 6.37078 6.50229 6.58606 6.87568 7.21600 8.80928 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.003214 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.719598 B = 8708.579067 C = 9961.656068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.168 4.168 3 C 0.122 3.878 4 N -0.560 5.560 5 C 0.225 3.775 6 C -0.543 4.543 7 H 0.030 0.970 8 C 0.018 3.982 9 N -0.941 5.941 10 Si 0.945 3.055 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.240 1.240 14 C 0.496 3.504 15 O -0.539 6.539 16 C 0.516 3.484 17 O -0.503 6.503 18 N -0.530 5.530 19 C 0.097 3.903 20 C -0.081 4.081 21 C -0.086 4.086 22 C -0.066 4.066 23 C -0.068 4.068 24 C -0.018 4.018 25 C 0.280 3.720 26 N -0.461 5.461 27 C -0.095 4.095 28 C 0.110 3.890 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.270 0.730 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.366 -19.081 -7.775 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.001 3.999 4 N -0.290 5.290 5 C 0.104 3.896 6 C -0.581 4.581 7 H 0.048 0.952 8 C -0.180 4.180 9 N -0.580 5.580 10 Si 0.768 3.232 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.163 1.163 14 C 0.278 3.722 15 O -0.418 6.418 16 C 0.301 3.699 17 O -0.378 6.378 18 N -0.253 5.253 19 C -0.024 4.024 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.084 4.084 23 C -0.089 4.089 24 C -0.022 4.022 25 C -0.034 4.034 26 N -0.137 5.137 27 C -0.119 4.119 28 C 0.016 3.984 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.201 0.799 42 H 0.188 0.812 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.357 -19.211 -9.080 23.217 hybrid contribution -0.672 0.925 1.030 1.539 sum 8.685 -18.286 -8.049 21.785 Atomic orbital electron populations 1.24044 0.94999 1.03167 0.98498 1.23044 0.96569 0.97365 1.01707 1.21227 0.92589 0.96568 0.89527 1.47870 1.15198 1.48985 1.16935 1.19567 0.96696 0.90470 0.82856 1.21433 1.38809 0.94571 1.03279 0.95169 1.25783 0.95884 0.94592 1.01790 1.70031 1.48036 1.06068 1.33864 0.85749 0.79545 0.79083 0.78860 1.19331 1.20207 1.16281 1.19929 0.82905 0.80792 0.88526 1.90679 1.52970 1.59249 1.38902 1.20142 0.81743 0.79326 0.88686 1.90636 1.51894 1.54688 1.40611 1.45650 1.12083 1.50818 1.16795 1.22542 0.85928 1.03105 0.90838 1.21399 0.96887 1.02345 0.91111 1.20706 0.91641 0.98668 0.97905 1.20744 1.01670 0.95959 0.89982 1.21461 0.90874 0.97778 0.98799 1.15635 0.94963 1.04170 0.87427 1.25815 0.92530 0.92435 0.92642 1.81268 1.09280 1.10395 1.12724 1.20749 1.00716 0.99257 0.91144 1.18375 0.94873 0.97242 0.87946 0.87655 0.86352 0.88266 0.89954 0.87657 0.92874 0.94568 0.92054 0.88853 0.90393 0.85373 0.85915 0.79885 0.81234 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 14.32 67.78 0.97 -3.31 16 2 C -0.17 -5.12 8.90 25.65 0.23 -4.89 16 3 C 0.12 4.41 5.47 85.64 0.47 4.88 16 4 N -0.56 -23.61 2.47 -832.18 -2.05 -25.66 16 5 C 0.23 10.67 4.23 85.63 0.36 11.03 16 6 C -0.54 -30.94 9.94 25.60 0.25 -30.68 16 7 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 8 C 0.02 1.05 5.47 84.66 0.46 1.52 16 9 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 10 Si 0.95 42.46 27.47 68.60 1.88 44.34 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 14 C 0.50 20.17 7.57 87.24 0.66 20.83 16 15 O -0.54 -23.49 13.68 -3.27 -0.04 -23.53 16 16 C 0.52 17.77 7.73 87.24 0.67 18.44 16 17 O -0.50 -17.60 10.36 -3.33 -0.03 -17.64 16 18 N -0.53 -14.72 3.12 -631.26 -1.97 -16.69 16 19 C 0.10 2.16 5.71 86.62 0.49 2.65 16 20 C -0.08 -0.92 6.94 30.28 0.21 -0.71 16 21 C -0.09 -1.20 6.23 -19.53 -0.12 -1.32 16 22 C -0.07 -0.51 10.02 22.22 0.22 -0.28 16 23 C -0.07 -0.67 9.76 22.54 0.22 -0.45 16 24 C -0.02 -0.32 5.72 -21.45 -0.12 -0.44 16 25 C 0.28 6.17 15.32 88.33 1.35 7.53 16 26 N -0.46 -12.39 18.54 19.00 0.35 -12.04 16 27 C -0.10 -2.20 9.16 22.80 0.21 -1.99 16 28 C 0.11 2.48 6.61 38.30 0.25 2.74 16 29 H 0.11 2.53 7.84 -2.91 -0.02 2.50 16 30 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.10 3.06 7.76 -2.91 -0.02 3.04 16 32 H 0.08 2.98 7.66 -2.39 -0.02 2.96 16 33 H 0.11 3.89 5.41 -2.40 -0.01 3.88 16 34 H 0.05 2.35 7.13 -2.39 -0.02 2.34 16 35 H 0.04 1.76 6.78 -2.39 -0.02 1.75 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.09 2.21 7.25 -2.39 -0.02 2.19 16 38 H 0.08 1.98 7.99 -2.39 -0.02 1.96 16 39 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 42 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.12 3.47 6.27 -2.91 -0.02 3.45 16 Total: -1.00 -75.72 370.37 6.23 -69.49 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.00 Total: 13.60 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 6.80 Total: 25.53 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.37 Total: -111.80 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.08 Total: -41.17 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -75.72 6.23 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293204342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.342 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds