Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99813 * 2 1 4 4 N 1.46505 * 109.47198 * 124.99853 * 3 2 1 5 5 C 1.46503 * 119.99853 * 274.85628 * 4 3 2 6 6 C 1.50701 * 109.47287 * 263.30721 * 5 4 3 7 7 H 1.07998 * 119.99390 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99803 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00361 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99742 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47095 * 89.99874 * 10 8 6 12 12 H 1.48504 * 109.46797 * 209.99667 * 10 8 6 13 13 H 1.48497 * 109.47065 * 329.99733 * 10 8 6 14 14 C 1.34776 * 120.00088 * 94.85840 * 4 3 2 15 15 O 1.21365 * 120.00015 * 354.71648 * 14 4 3 16 16 C 1.49320 * 119.99955 * 174.72599 * 14 4 3 17 17 O 1.21390 * 120.00014 * 0.56042 * 16 14 4 18 18 N 1.34784 * 119.99979 * 180.56721 * 16 14 4 19 19 C 1.39443 * 119.99773 * 185.74340 * 18 16 14 20 20 C 1.37853 * 120.26119 * 23.92502 * 19 18 16 21 21 C 1.39132 * 120.82780 * 180.02562 * 20 19 18 22 22 C 1.36222 * 120.96898 * 359.75285 * 21 20 19 23 23 C 1.40409 * 119.92758 * 0.02562 * 22 21 20 24 24 C 1.40801 * 121.30130 * 179.97438 * 23 22 21 25 25 C 1.36575 * 118.16009 * 180.02562 * 24 23 22 26 26 C 1.39317 * 119.92721 * 0.02562 * 25 24 23 27 27 N 1.31103 * 121.71989 * 0.02562 * 26 25 24 28 28 C 1.33555 * 121.33669 * 359.95490 * 27 26 25 29 29 H 1.08001 * 119.99937 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00011 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99583 * 179.97438 * 2 1 3 32 32 H 1.08991 * 109.47608 * 4.99879 * 3 2 1 33 33 H 1.09003 * 109.47039 * 244.99288 * 3 2 1 34 34 H 1.08998 * 109.46924 * 23.31546 * 5 4 3 35 35 H 1.09000 * 109.47003 * 143.30954 * 5 4 3 36 36 H 0.96995 * 120.00034 * 180.02562 * 9 8 6 37 37 H 0.97000 * 119.99873 * 5.74020 * 18 16 14 38 38 H 1.08005 * 119.58768 * 359.78504 * 20 19 18 39 39 H 1.08004 * 119.51493 * 179.78194 * 21 20 19 40 40 H 1.07999 * 120.03773 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.91939 * 0.02562 * 24 23 22 42 42 H 1.08004 * 120.03596 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.14105 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5291 1.7652 2.4516 6 6 2.8667 3.2204 2.6504 7 1 3.3760 3.7678 1.8711 8 6 2.5254 3.8527 3.8270 9 7 1.9048 3.1861 4.7758 10 14 2.9433 5.6567 4.0731 11 1 1.8193 6.4960 3.5860 12 1 3.1681 5.9201 5.5172 13 1 4.1746 5.9878 3.3120 14 6 4.2769 0.9581 0.9579 15 8 4.6390 0.5088 -0.1098 16 6 5.2531 1.0967 2.0793 17 8 4.8887 1.5365 3.1504 18 7 6.5390 0.7335 1.9021 19 6 7.4228 0.7494 2.9806 20 6 6.9471 0.6452 4.2702 21 6 7.8182 0.6602 5.3549 22 6 9.1634 0.7731 5.1721 23 6 9.6876 0.8769 3.8737 24 6 11.0729 0.9954 3.6514 25 6 11.5128 1.0928 2.3621 26 6 10.5974 1.0737 1.3121 27 7 9.3082 0.9642 1.5235 28 6 8.8130 0.8648 2.7598 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 1.4497 1.6300 2.5192 35 1 3.0188 1.1700 3.2224 36 1 1.6643 3.6311 5.6034 37 1 6.8495 0.4612 1.0245 38 1 5.8845 0.5546 4.4410 39 1 7.4222 0.5807 6.3566 40 1 9.8260 0.7828 6.0250 41 1 11.7684 1.0090 4.4776 42 1 12.5691 1.1853 2.1569 43 1 10.9592 1.1519 0.2975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340614908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = 34.516382 kcal Electronic energy + Delta-G solvation = -28899.924763 eV Core-core repulsion = 24911.820640 eV Total energy + Delta-G solvation = -3988.104123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.12344 -40.09069 -38.33314 -36.74022 -35.92505 -34.79983 -33.30426 -32.55117 -32.06191 -30.52022 -29.17125 -27.55939 -26.40606 -24.46240 -23.77944 -23.65962 -22.73525 -21.15108 -19.98548 -19.31571 -18.14650 -17.75899 -16.99804 -16.69599 -16.46531 -16.10208 -15.37279 -15.23178 -15.20393 -14.63971 -14.41683 -14.40058 -14.17722 -13.81860 -13.60792 -13.33065 -13.09606 -12.95520 -12.64793 -12.29657 -12.15724 -11.80214 -11.60661 -11.50679 -11.36629 -11.13792 -10.91608 -10.89366 -10.74058 -10.47054 -10.01262 -9.72737 -9.68589 -9.61207 -9.20050 -8.80360 -8.62967 -8.28876 -7.92422 -7.53229 -6.03326 -4.04977 0.39207 0.82181 1.78940 2.25318 2.43132 2.94714 3.01195 3.30584 3.37260 3.42113 3.81920 4.11725 4.15235 4.23414 4.45739 4.60854 4.71939 4.83704 4.90087 4.98308 5.21147 5.27786 5.32475 5.33708 5.46441 5.47408 5.61764 5.80752 5.84596 5.90045 6.08554 6.15894 6.23504 6.26406 6.37065 6.57213 6.59917 6.63103 6.85904 6.99266 7.03318 7.34225 7.37087 7.58118 7.84700 7.85765 8.05577 8.17872 8.31642 8.63334 8.94622 9.57566 11.05543 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010451 B = 0.003917 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.629487 B = 7147.353113 C = 8767.793808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.140 3.860 4 N -0.555 5.555 5 C 0.231 3.769 6 C -0.514 4.514 7 H 0.053 0.947 8 C 0.071 3.929 9 N -0.890 5.890 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.509 3.491 15 O -0.556 6.556 16 C 0.486 3.514 17 O -0.425 6.425 18 N -0.643 5.643 19 C 0.188 3.812 20 C -0.132 4.132 21 C -0.076 4.076 22 C -0.136 4.136 23 C -0.080 4.080 24 C -0.062 4.062 25 C -0.175 4.175 26 C 0.119 3.881 27 N -0.468 5.468 28 C 0.104 3.896 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.424 0.576 38 H 0.160 0.840 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 -7.029 -2.662 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C 0.017 3.983 4 N -0.285 5.285 5 C 0.112 3.888 6 C -0.553 4.553 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.529 5.529 10 Si 0.720 3.280 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.291 3.709 15 O -0.437 6.437 16 C 0.268 3.732 17 O -0.292 6.292 18 N -0.288 5.288 19 C 0.089 3.911 20 C -0.154 4.154 21 C -0.095 4.095 22 C -0.156 4.156 23 C -0.082 4.082 24 C -0.088 4.088 25 C -0.195 4.195 26 C -0.054 4.054 27 N -0.176 5.176 28 C -0.019 4.019 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.262 0.738 38 H 0.177 0.823 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.519 -6.908 -2.930 14.596 hybrid contribution 1.028 1.063 0.565 1.583 sum 13.547 -5.845 -2.365 14.942 Atomic orbital electron populations 1.23799 0.95716 1.01750 1.01077 1.23295 0.96111 0.98989 0.99399 1.20611 0.92202 0.95385 0.90072 1.48267 1.07088 1.59832 1.13331 1.19936 0.95873 0.96307 0.76677 1.21192 1.38206 0.94407 1.01458 0.92843 1.24763 0.94909 0.97919 0.95515 1.69909 1.40285 1.36242 1.06431 0.86601 0.78679 0.85356 0.77385 1.20750 1.21128 1.20102 1.19696 0.83844 0.79970 0.87413 1.90670 1.78910 1.46687 1.27447 1.20457 0.82779 0.79817 0.90143 1.90946 1.76232 1.36237 1.25822 1.43090 1.08514 1.64878 1.12357 1.17498 0.86640 0.98637 0.88310 1.21585 1.02921 1.00883 0.90060 1.20845 0.92811 0.96624 0.99171 1.20842 0.95825 1.03832 0.95098 1.18581 0.93780 1.01618 0.94215 1.21416 0.94038 0.95772 0.97600 1.21835 1.01309 1.02674 0.93672 1.22841 0.88091 0.94812 0.99643 1.67811 1.15721 1.11629 1.22426 1.18528 0.92390 1.02034 0.88983 0.88692 0.88313 0.87606 0.89339 0.89555 0.94752 0.91817 0.92864 0.73791 0.82284 0.85067 0.85452 0.84474 0.84752 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 14.32 29.01 0.42 -2.17 16 2 C -0.16 -2.53 9.84 -36.03 -0.35 -2.88 16 3 C 0.14 2.51 5.83 -5.19 -0.03 2.48 16 4 N -0.56 -11.85 2.46 -176.99 -0.44 -12.29 16 5 C 0.23 5.68 4.78 -5.19 -0.02 5.65 16 6 C -0.51 -13.93 7.76 -34.44 -0.27 -14.19 16 7 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 8 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 9 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 C 0.51 10.79 7.67 -11.65 -0.09 10.70 16 15 O -0.56 -11.80 16.04 5.48 0.09 -11.71 16 16 C 0.49 10.17 7.52 -11.64 -0.09 10.08 16 17 O -0.42 -9.97 9.23 5.46 0.05 -9.92 16 18 N -0.64 -11.74 5.27 -10.06 -0.05 -11.79 16 19 C 0.19 3.26 6.48 -83.40 -0.54 2.72 16 20 C -0.13 -2.22 8.71 -39.39 -0.34 -2.56 16 21 C -0.08 -1.03 9.94 -39.97 -0.40 -1.43 16 22 C -0.14 -1.65 9.76 -39.49 -0.39 -2.03 16 23 C -0.08 -1.06 5.74 -106.82 -0.61 -1.67 16 24 C -0.06 -0.63 9.89 -39.21 -0.39 -1.01 16 25 C -0.18 -1.61 10.03 -39.78 -0.40 -2.01 16 26 C 0.12 1.33 11.15 -17.46 -0.19 1.13 16 27 N -0.47 -6.96 9.76 -10.85 -0.11 -7.07 16 28 C 0.10 1.64 6.62 -84.69 -0.56 1.08 16 29 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.55 7.76 -51.93 -0.40 1.15 16 33 H 0.09 1.51 7.36 -51.93 -0.38 1.12 16 34 H 0.03 0.88 8.02 -51.93 -0.42 0.46 16 35 H 0.06 1.69 5.85 -51.93 -0.30 1.38 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.42 7.32 7.82 -40.82 -0.32 7.00 16 38 H 0.16 2.99 5.67 -52.48 -0.30 2.70 16 39 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -32.03 371.27 -8.54 -40.57 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.04 Total: 8.81 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -4.36 Total: 5.76 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.14 Total: -55.86 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.14 Total: -21.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.03 -8.54 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340614908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.084 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds