Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99813 * 2 1 4 4 N 1.46505 * 109.47198 * 124.99853 * 3 2 1 5 5 C 1.46503 * 119.99853 * 274.85628 * 4 3 2 6 6 C 1.50701 * 109.47287 * 263.30721 * 5 4 3 7 7 H 1.07998 * 119.99390 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99803 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00361 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99742 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47095 * 89.99874 * 10 8 6 12 12 H 1.48504 * 109.46797 * 209.99667 * 10 8 6 13 13 H 1.48497 * 109.47065 * 329.99733 * 10 8 6 14 14 C 1.34776 * 120.00088 * 94.85840 * 4 3 2 15 15 O 1.21365 * 120.00015 * 354.71648 * 14 4 3 16 16 C 1.49320 * 119.99955 * 174.72599 * 14 4 3 17 17 O 1.21390 * 120.00014 * 0.56042 * 16 14 4 18 18 N 1.34784 * 119.99979 * 180.56721 * 16 14 4 19 19 C 1.39443 * 119.99773 * 185.74340 * 18 16 14 20 20 C 1.37853 * 120.26119 * 23.92502 * 19 18 16 21 21 C 1.39132 * 120.82780 * 180.02562 * 20 19 18 22 22 C 1.36222 * 120.96898 * 359.75285 * 21 20 19 23 23 C 1.40409 * 119.92758 * 0.02562 * 22 21 20 24 24 C 1.40801 * 121.30130 * 179.97438 * 23 22 21 25 25 C 1.36575 * 118.16009 * 180.02562 * 24 23 22 26 26 C 1.39317 * 119.92721 * 0.02562 * 25 24 23 27 27 N 1.31103 * 121.71989 * 0.02562 * 26 25 24 28 28 C 1.33555 * 121.33669 * 359.95490 * 27 26 25 29 29 H 1.08001 * 119.99937 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00011 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99583 * 179.97438 * 2 1 3 32 32 H 1.08991 * 109.47608 * 4.99879 * 3 2 1 33 33 H 1.09003 * 109.47039 * 244.99288 * 3 2 1 34 34 H 1.08998 * 109.46924 * 23.31546 * 5 4 3 35 35 H 1.09000 * 109.47003 * 143.30954 * 5 4 3 36 36 H 0.96995 * 120.00034 * 180.02562 * 9 8 6 37 37 H 0.97000 * 119.99873 * 5.74020 * 18 16 14 38 38 H 1.08005 * 119.58768 * 359.78504 * 20 19 18 39 39 H 1.08004 * 119.51493 * 179.78194 * 21 20 19 40 40 H 1.07999 * 120.03773 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.91939 * 0.02562 * 24 23 22 42 42 H 1.08004 * 120.03596 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.14105 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5291 1.7652 2.4516 6 6 2.8667 3.2204 2.6504 7 1 3.3760 3.7678 1.8711 8 6 2.5254 3.8527 3.8270 9 7 1.9048 3.1861 4.7758 10 14 2.9433 5.6567 4.0731 11 1 1.8193 6.4960 3.5860 12 1 3.1681 5.9201 5.5172 13 1 4.1746 5.9878 3.3120 14 6 4.2769 0.9581 0.9579 15 8 4.6390 0.5088 -0.1098 16 6 5.2531 1.0967 2.0793 17 8 4.8887 1.5365 3.1504 18 7 6.5390 0.7335 1.9021 19 6 7.4228 0.7494 2.9806 20 6 6.9471 0.6452 4.2702 21 6 7.8182 0.6602 5.3549 22 6 9.1634 0.7731 5.1721 23 6 9.6876 0.8769 3.8737 24 6 11.0729 0.9954 3.6514 25 6 11.5128 1.0928 2.3621 26 6 10.5974 1.0737 1.3121 27 7 9.3082 0.9642 1.5235 28 6 8.8130 0.8648 2.7598 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 1.4497 1.6300 2.5192 35 1 3.0188 1.1700 3.2224 36 1 1.6643 3.6311 5.6034 37 1 6.8495 0.4612 1.0245 38 1 5.8845 0.5546 4.4410 39 1 7.4222 0.5807 6.3566 40 1 9.8260 0.7828 6.0250 41 1 11.7684 1.0090 4.4776 42 1 12.5691 1.1853 2.1569 43 1 10.9592 1.1519 0.2975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340614908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = 14.683207 kcal Electronic energy + Delta-G solvation = -28900.784794 eV Core-core repulsion = 24911.820640 eV Total energy + Delta-G solvation = -3988.964154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.37512 -41.46335 -39.84505 -37.96012 -37.48567 -36.10126 -35.04201 -33.87347 -33.56347 -31.49886 -30.33742 -29.46054 -27.95732 -25.75074 -25.17424 -24.69268 -24.39936 -22.39442 -21.34861 -20.66799 -19.33371 -19.13601 -18.64060 -18.26250 -17.73269 -17.56720 -16.83495 -16.78897 -16.56466 -16.18905 -15.89308 -15.60816 -15.44670 -15.04102 -14.83473 -14.63650 -14.30783 -14.25698 -14.09157 -13.90499 -13.66375 -13.14165 -13.03424 -12.91748 -12.86273 -12.68871 -12.43255 -12.33835 -12.30341 -11.95034 -11.90242 -11.69402 -10.85283 -10.66197 -10.51457 -10.45601 -10.09864 -9.75640 -9.69981 -8.71990 -8.15287 -6.22977 -0.60681 -0.15867 0.36625 1.02780 1.12416 1.35661 1.37800 1.46744 1.56689 1.97957 2.23726 2.39029 2.62061 3.11473 3.18597 3.25606 3.33389 3.75150 3.82236 3.98498 4.01026 4.09616 4.12816 4.28504 4.33610 4.43797 4.54749 4.66579 4.74499 4.80106 4.81913 5.00136 5.01360 5.11779 5.23131 5.28423 5.36040 5.43096 5.52490 5.65750 5.66004 5.73714 5.82202 5.93031 6.04614 6.10912 6.26104 6.69171 6.79363 6.92409 7.02478 7.42369 8.93119 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010451 B = 0.003917 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.629487 B = 7147.353113 C = 8767.793808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.137 3.863 4 N -0.559 5.559 5 C 0.252 3.748 6 C -0.519 4.519 7 H 0.041 0.959 8 C 0.027 3.973 9 N -0.917 5.917 10 Si 0.948 3.052 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.505 3.495 15 O -0.558 6.558 16 C 0.484 3.516 17 O -0.461 6.461 18 N -0.632 5.632 19 C 0.146 3.854 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.108 4.108 23 C -0.100 4.100 24 C -0.054 4.054 25 C -0.166 4.166 26 C 0.121 3.879 27 N -0.513 5.513 28 C 0.086 3.914 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.024 0.976 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.425 0.575 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.179 0.821 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.492 -6.668 -2.441 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.204 4.204 3 C 0.016 3.984 4 N -0.289 5.289 5 C 0.132 3.868 6 C -0.557 4.557 7 H 0.059 0.941 8 C -0.173 4.173 9 N -0.557 5.557 10 Si 0.774 3.226 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.288 3.712 15 O -0.440 6.440 16 C 0.266 3.734 17 O -0.332 6.332 18 N -0.277 5.277 19 C 0.049 3.951 20 C -0.166 4.166 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.103 4.103 24 C -0.080 4.080 25 C -0.185 4.185 26 C -0.051 4.051 27 N -0.222 5.222 28 C -0.036 4.036 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.264 0.736 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.197 0.803 42 H 0.197 0.803 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 15.504 -6.563 -2.731 17.056 hybrid contribution 0.331 0.888 0.420 1.037 sum 15.835 -5.675 -2.311 16.979 Atomic orbital electron populations 1.24069 0.94925 1.03298 0.97412 1.23125 0.96822 0.97709 1.02711 1.20785 0.91913 0.96891 0.88847 1.48237 1.07727 1.59745 1.13163 1.19434 0.94604 0.94911 0.77862 1.21324 1.37708 0.95477 1.01225 0.94114 1.25440 0.94922 1.01589 0.95320 1.70000 1.41237 1.37675 1.06808 0.85725 0.78379 0.81201 0.77295 1.19216 1.20598 1.20889 1.19844 0.83975 0.79841 0.87568 1.90645 1.78942 1.46885 1.27506 1.20464 0.83636 0.79732 0.89570 1.90934 1.76997 1.38488 1.26749 1.42908 1.07782 1.64128 1.12912 1.17765 0.87686 1.01716 0.87912 1.21502 1.02050 1.01667 0.91344 1.21036 0.93557 0.98201 0.98937 1.21319 0.95430 0.99824 0.96118 1.18979 0.95355 1.02108 0.93843 1.21919 0.92784 0.93856 0.99454 1.22315 1.03096 1.00437 0.92679 1.23574 0.87304 0.92236 1.01983 1.67800 1.17886 1.14126 1.22361 1.18626 0.91807 1.02692 0.90491 0.86162 0.87609 0.87891 0.89131 0.89304 0.95827 0.94010 0.92702 0.73635 0.85432 0.83221 0.81133 0.80322 0.80327 0.79686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 14.32 67.78 0.97 -3.27 16 2 C -0.18 -5.93 9.84 25.64 0.25 -5.68 16 3 C 0.14 5.07 5.83 85.63 0.50 5.57 16 4 N -0.56 -25.09 2.46 -832.24 -2.05 -27.14 16 5 C 0.25 13.08 4.78 85.63 0.41 13.49 16 6 C -0.52 -29.23 7.76 25.60 0.20 -29.03 16 7 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 8 C 0.03 1.53 5.46 84.65 0.46 2.00 16 9 N -0.92 -53.91 13.29 21.44 0.28 -53.62 16 10 Si 0.95 45.45 29.54 68.60 2.03 47.47 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 14 C 0.51 22.73 7.67 87.23 0.67 23.40 16 15 O -0.56 -24.72 16.04 -3.29 -0.05 -24.77 16 16 C 0.48 21.88 7.52 87.23 0.66 22.53 16 17 O -0.46 -23.48 9.23 -3.37 -0.03 -23.51 16 18 N -0.63 -24.93 5.27 -304.08 -1.60 -26.53 16 19 C 0.15 5.40 6.48 38.58 0.25 5.65 16 20 C -0.14 -5.19 8.71 22.39 0.20 -5.00 16 21 C -0.10 -2.72 9.94 22.01 0.22 -2.50 16 22 C -0.11 -2.36 9.76 22.33 0.22 -2.14 16 23 C -0.10 -2.45 5.74 -21.29 -0.12 -2.57 16 24 C -0.05 -0.85 9.89 22.51 0.22 -0.62 16 25 C -0.17 -2.28 10.03 22.14 0.22 -2.06 16 26 C 0.12 2.39 11.15 85.06 0.95 3.34 16 27 N -0.51 -15.09 9.76 -188.25 -1.84 -16.93 16 28 C 0.09 2.73 6.62 40.45 0.27 3.00 16 29 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.11 2.68 7.84 -2.91 -0.02 2.66 16 31 H 0.10 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.09 3.25 7.76 -2.39 -0.02 3.24 16 33 H 0.09 3.19 7.36 -2.39 -0.02 3.17 16 34 H 0.02 1.27 8.02 -2.39 -0.02 1.25 16 35 H 0.04 2.38 5.85 -2.39 -0.01 2.37 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.43 15.84 7.82 -92.71 -0.73 15.12 16 38 H 0.13 5.39 5.67 -2.91 -0.02 5.37 16 39 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 42 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 43 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -74.14 371.27 3.61 -70.53 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.33 Total: 28.40 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 6.54 Total: 26.11 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.20 Total: -124.22 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.08 Total: -48.28 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.14 3.61 -70.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340614908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.213 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds