Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 120.00398 * 2 1 4 4 N 1.46492 * 109.47492 * 124.99625 * 3 2 1 5 5 C 1.46502 * 120.00337 * 274.84066 * 4 3 2 6 6 C 1.50704 * 109.47069 * 263.70763 * 5 4 3 7 7 H 1.08001 * 119.99947 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00071 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99653 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99974 * 359.97438 * 8 6 5 11 11 H 1.48510 * 109.47056 * 90.00043 * 10 8 6 12 12 H 1.48499 * 109.46979 * 209.99445 * 10 8 6 13 13 H 1.48500 * 109.47265 * 330.00132 * 10 8 6 14 14 C 1.34776 * 120.00256 * 94.83464 * 4 3 2 15 15 O 1.21368 * 119.99506 * 354.62540 * 14 4 3 16 16 C 1.49346 * 120.00450 * 174.62288 * 14 4 3 17 17 O 1.21378 * 119.99734 * 0.28405 * 16 14 4 18 18 N 1.34772 * 120.00087 * 180.28562 * 16 14 4 19 19 C 1.39714 * 119.99937 * 184.86792 * 18 16 14 20 20 C 1.40055 * 120.18999 * 145.17144 * 19 18 16 21 21 N 1.30952 * 121.62111 * 180.29101 * 20 19 18 22 22 C 1.33695 * 121.59534 * 359.69754 * 21 20 19 23 23 C 1.40602 * 120.91044 * 180.02562 * 22 21 20 24 24 C 1.36082 * 119.78882 * 180.02562 * 23 22 21 25 25 C 1.39356 * 121.07652 * 0.02562 * 24 23 22 26 26 C 1.36128 * 120.85043 * 359.97438 * 25 24 23 27 27 C 1.40485 * 119.62352 * 359.97438 * 26 25 24 28 28 C 1.38210 * 120.19244 * 324.88246 * 19 18 16 29 29 H 1.08006 * 119.99806 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00157 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99790 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46765 * 4.99981 * 3 2 1 33 33 H 1.09003 * 109.47491 * 245.00253 * 3 2 1 34 34 H 1.08999 * 109.46999 * 23.70714 * 5 4 3 35 35 H 1.08997 * 109.47356 * 143.70699 * 5 4 3 36 36 H 0.97001 * 119.99776 * 179.97438 * 9 8 6 37 37 H 0.97001 * 119.99965 * 4.86556 * 18 16 14 38 38 H 1.08001 * 119.19123 * 359.96835 * 20 19 18 39 39 H 1.08004 * 120.10526 * 0.03028 * 23 22 21 40 40 H 1.07999 * 119.45757 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.56926 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.19140 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.99051 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5293 1.7655 2.4515 6 6 2.8586 3.2232 2.6460 7 1 3.3638 3.7716 1.8646 8 6 2.5151 3.8567 3.8214 9 7 2.8030 5.1287 3.9912 10 14 1.6408 2.9084 5.1725 11 1 2.6463 2.3033 6.0828 12 1 0.7696 3.8327 5.9418 13 1 0.8119 1.8352 4.5673 14 6 4.2768 0.9575 0.9580 15 8 4.6382 0.5061 -0.1091 16 6 5.2538 1.0982 2.0788 17 8 4.8911 1.5448 3.1475 18 7 6.5381 0.7292 1.9035 19 6 7.4282 0.7647 2.9798 20 6 8.4391 -0.1983 3.0898 21 7 9.2849 -0.1948 4.0895 22 6 9.2286 0.7320 5.0514 23 6 10.1444 0.7224 6.1182 24 6 10.0659 1.6766 7.0853 25 6 9.0887 2.6691 7.0389 26 6 8.1845 2.7114 6.0222 27 6 8.2365 1.7430 5.0059 28 6 7.3200 1.7540 3.9389 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4508 1.6242 2.5217 35 1 3.0241 1.1752 3.2227 36 1 2.5610 5.5745 4.8180 37 1 6.8444 0.4389 1.0301 38 1 8.5200 -0.9658 2.3342 39 1 10.9079 -0.0398 6.1699 40 1 10.7724 1.6644 7.9021 41 1 9.0490 3.4147 7.8192 42 1 7.4314 3.4852 5.9970 43 1 6.5515 2.5101 3.8737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340616542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = 35.255685 kcal Electronic energy + Delta-G solvation = -28832.831428 eV Core-core repulsion = 24844.759363 eV Total energy + Delta-G solvation = -3988.072065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10423 -40.17272 -38.43009 -37.01922 -36.08190 -34.72031 -33.36007 -32.75790 -32.19213 -30.23522 -29.35035 -28.24686 -26.65766 -24.72298 -24.01239 -22.87417 -22.08063 -21.88380 -20.13223 -19.36927 -18.46400 -17.69374 -17.11013 -16.84062 -16.70994 -16.24561 -15.52170 -15.40314 -15.20408 -14.64972 -14.50414 -14.29640 -14.11346 -13.99629 -13.72967 -13.35037 -13.28767 -12.96469 -12.81565 -12.41047 -12.09772 -11.87240 -11.75547 -11.66457 -11.45567 -11.36910 -11.04962 -10.90545 -10.73991 -10.53615 -10.25835 -9.87464 -9.63434 -9.56188 -9.32910 -8.79287 -8.56485 -8.48864 -8.08433 -7.85872 -6.13558 -4.11122 0.43524 0.77257 1.84900 2.10429 2.26963 2.76087 2.95368 3.26360 3.31339 3.34838 3.67310 3.92537 4.15585 4.29971 4.36324 4.65790 4.76421 4.82106 4.85571 5.02055 5.13954 5.19461 5.20716 5.24158 5.32858 5.46360 5.67961 5.76199 5.86034 5.96020 5.96526 6.10444 6.18722 6.25350 6.31430 6.38966 6.48695 6.69100 6.72205 6.79804 6.80400 6.91049 7.06395 7.30504 7.49296 7.77118 7.86156 8.08840 8.36644 8.48657 8.86088 9.46834 10.99417 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.003956 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.578312 B = 7077.036184 C = 8967.490578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.140 3.860 4 N -0.550 5.550 5 C 0.199 3.801 6 C -0.516 4.516 7 H 0.073 0.927 8 C 0.082 3.918 9 N -0.896 5.896 10 Si 0.871 3.129 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.512 3.488 15 O -0.552 6.552 16 C 0.493 3.507 17 O -0.437 6.437 18 N -0.654 5.654 19 C 0.091 3.909 20 C 0.123 3.877 21 N -0.463 5.463 22 C 0.108 3.892 23 C -0.094 4.094 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.088 4.088 27 C -0.081 4.081 28 C -0.062 4.062 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.264 0.736 37 H 0.420 0.580 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -8.788 -0.015 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.017 3.983 4 N -0.280 5.280 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.091 0.909 8 C -0.121 4.121 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.433 6.433 16 C 0.274 3.726 17 O -0.305 6.305 18 N -0.303 5.303 19 C -0.006 4.006 20 C -0.052 4.052 21 N -0.170 5.170 22 C -0.013 4.013 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.107 4.107 27 C -0.084 4.084 28 C -0.090 4.090 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.257 0.743 38 H 0.179 0.821 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.153 0.847 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.966 -9.126 0.490 12.803 hybrid contribution -1.084 0.180 0.357 1.156 sum 7.882 -8.946 0.848 11.953 Atomic orbital electron populations 1.23837 0.95740 1.01875 1.00863 1.23316 0.96139 0.99016 0.99583 1.20648 0.92217 0.95440 0.89947 1.47900 1.07327 1.60095 1.12645 1.20322 0.95498 0.97584 0.78685 1.21071 1.39183 0.92175 1.02953 0.90923 1.24699 0.95210 0.94561 0.97605 1.69887 1.47238 1.09897 1.26434 0.86933 0.80125 0.80161 0.82962 1.19814 1.21263 1.19156 1.19671 0.83678 0.79762 0.87431 1.90678 1.78741 1.46413 1.27434 1.20397 0.82683 0.79780 0.89719 1.90925 1.76739 1.36667 1.26166 1.43070 1.08353 1.66778 1.12072 1.18699 0.93659 0.96430 0.91840 1.22810 0.90767 0.95578 0.96052 1.67928 1.24230 1.23251 1.01589 1.18855 0.95452 0.92290 0.94720 1.20716 0.98298 0.99309 0.92889 1.20863 0.98537 0.94677 0.98626 1.20913 0.95369 0.98919 0.98668 1.21152 0.98755 0.97759 0.93003 1.18793 0.96153 0.97041 0.96413 1.22127 0.97675 0.96779 0.92432 0.88603 0.88214 0.87502 0.89081 0.89182 0.95021 0.92655 0.92612 0.74283 0.82113 0.85013 0.85557 0.85563 0.84713 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 14.32 29.02 0.42 -1.93 16 2 C -0.16 -2.34 9.84 -36.03 -0.35 -2.70 16 3 C 0.14 2.32 5.83 -5.20 -0.03 2.29 16 4 N -0.55 -10.89 2.46 -176.99 -0.44 -11.32 16 5 C 0.20 4.49 3.85 -5.19 -0.02 4.47 16 6 C -0.52 -13.64 8.35 -34.44 -0.29 -13.93 16 7 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 8 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 9 N -0.90 -26.24 13.96 55.43 0.77 -25.46 16 10 Si 0.87 20.85 27.47 -169.99 -4.67 16.18 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C 0.51 9.89 7.67 -11.63 -0.09 9.80 16 15 O -0.55 -10.52 16.04 5.48 0.09 -10.43 16 16 C 0.49 9.31 7.57 -11.64 -0.09 9.22 16 17 O -0.44 -9.59 9.58 5.47 0.05 -9.53 16 18 N -0.65 -9.92 5.33 -10.20 -0.05 -9.97 16 19 C 0.09 1.39 6.32 -83.59 -0.53 0.86 16 20 C 0.12 1.64 11.09 -17.25 -0.19 1.45 16 21 N -0.46 -6.77 10.32 -10.80 -0.11 -6.88 16 22 C 0.11 1.61 6.60 -84.84 -0.56 1.05 16 23 C -0.09 -1.15 9.98 -39.46 -0.39 -1.54 16 24 C -0.11 -1.15 9.94 -39.94 -0.40 -1.54 16 25 C -0.12 -1.40 9.96 -39.92 -0.40 -1.80 16 26 C -0.09 -1.24 9.77 -39.49 -0.39 -1.63 16 27 C -0.08 -1.28 5.74 -106.81 -0.61 -1.89 16 28 C -0.06 -1.05 8.55 -38.68 -0.33 -1.38 16 29 H 0.10 1.04 8.06 -52.48 -0.42 0.61 16 30 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 33 H 0.09 1.45 7.36 -51.93 -0.38 1.07 16 34 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 35 H 0.06 1.30 5.27 -51.93 -0.27 1.03 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.42 5.27 8.30 -40.82 -0.34 4.94 16 38 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.16 3.19 6.28 -52.49 -0.33 2.86 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -31.67 369.41 -8.19 -39.86 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.06 Total: 9.02 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -4.35 Total: 2.97 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.17 Total: -53.64 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.14 Total: -19.96 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.67 -8.19 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340616542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.120 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds