Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47500 * 2 1 4 4 N 1.46498 * 109.47196 * 120.00403 * 2 1 3 5 5 N 1.40086 * 126.03818 * 309.60154 * 4 2 1 6 6 C 1.30834 * 108.20880 * 180.23596 * 5 4 2 7 7 C 1.39878 * 108.20030 * 359.78495 * 6 5 4 8 8 C 1.34951 * 126.03993 * 129.45563 * 4 2 1 9 9 C 1.50703 * 126.12280 * 0.03608 * 8 4 2 10 10 H 1.09003 * 110.33103 * 144.74203 * 9 8 4 11 11 O 1.44423 * 110.46869 * 22.42328 * 9 8 4 12 12 C 1.44424 * 105.27295 * 200.61091 * 11 9 8 13 13 C 1.54798 * 104.85756 * 40.46210 * 12 11 9 14 14 C 1.54484 * 110.36840 * 266.98866 * 9 8 4 15 15 H 1.09010 * 110.50618 * 261.70469 * 14 9 8 16 16 N 1.46499 * 110.51339 * 24.27297 * 14 9 8 17 17 C 1.34777 * 120.00376 * 203.09380 * 16 14 9 18 18 O 1.21281 * 119.99605 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00124 * 180.02562 * 17 16 14 20 20 S 1.80996 * 109.47093 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99764 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00398 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00256 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99880 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47049 * 89.99651 * 25 23 21 27 27 H 1.48505 * 109.47106 * 209.99965 * 25 23 21 28 28 H 1.48499 * 109.46929 * 329.99656 * 25 23 21 29 29 H 1.09007 * 109.46804 * 299.99782 * 1 2 3 30 30 H 1.08994 * 109.47099 * 59.99781 * 1 2 3 31 31 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46804 * 240.00218 * 2 1 3 33 33 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46723 * 300.00478 * 3 2 1 35 35 H 1.09000 * 109.47069 * 59.99936 * 3 2 1 36 36 H 1.07999 * 125.90054 * 179.82207 * 6 5 4 37 37 H 1.07999 * 126.04216 * 180.02562 * 7 6 5 38 38 H 1.09006 * 110.37193 * 159.33971 * 12 11 9 39 39 H 1.09000 * 110.37506 * 281.56666 * 12 11 9 40 40 H 1.09000 * 110.60984 * 217.50866 * 13 12 11 41 41 H 1.09005 * 110.55772 * 94.70458 * 13 12 11 42 42 H 0.97000 * 119.99982 * 23.10299 * 16 14 9 43 43 H 1.08994 * 109.47374 * 60.00383 * 19 17 16 44 44 H 1.09001 * 109.46808 * 300.00285 * 19 17 16 45 45 H 0.96999 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.6123 -0.4438 2.5139 6 6 2.2719 -1.2522 3.3032 7 6 3.1144 -2.0422 2.5142 8 6 2.9368 -1.6791 1.2228 9 6 3.6430 -2.2682 0.0289 10 1 4.6677 -2.5342 0.2883 11 8 3.6292 -1.3379 -1.0757 12 6 3.8588 -2.1421 -2.2532 13 6 3.0254 -3.4265 -2.0253 14 6 2.8803 -3.5076 -0.4893 15 1 3.3361 -4.4225 -0.1104 16 7 1.4688 -3.4406 -0.1026 17 6 0.7366 -4.5696 -0.0265 18 8 1.2464 -5.6410 -0.2776 19 6 -0.7154 -4.5005 0.3707 20 16 -1.4177 -6.1687 0.3822 21 6 -3.0716 -5.8011 0.8660 22 1 -3.3647 -4.7787 1.0541 23 6 -3.9978 -6.8253 1.0056 24 7 -5.2332 -6.5507 1.3676 25 14 -3.4908 -8.5937 0.6812 26 1 -2.9952 -9.2055 1.9403 27 1 -4.6613 -9.3612 0.1850 28 1 -2.4128 -8.6201 -0.3398 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.1811 -1.3015 4.3783 37 1 3.7874 -2.8072 2.8722 38 1 3.5128 -1.6179 -3.1441 39 1 4.9170 -2.3871 -2.3450 40 1 3.5549 -4.3000 -2.4057 41 1 2.0469 -3.3366 -2.4972 42 1 1.0612 -2.5837 0.0984 43 1 -1.2586 -3.8822 -0.3438 44 1 -0.7994 -4.0645 1.3662 45 1 -5.8806 -7.2665 1.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348069029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = 0.108998 kcal Electronic energy + Delta-G solvation = -28387.234271 eV Core-core repulsion = 24533.082083 eV Total energy + Delta-G solvation = -3854.152188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82056 -40.03892 -38.70400 -35.77248 -34.61027 -32.44698 -31.94663 -31.44762 -29.93639 -29.19585 -27.60111 -27.49911 -25.62064 -23.73153 -22.76610 -22.03996 -21.15675 -20.20050 -19.66291 -18.07207 -17.31764 -16.97065 -16.50044 -15.92298 -15.72912 -15.35560 -15.06207 -15.01338 -14.94474 -14.60361 -14.29626 -13.91236 -13.60496 -13.39563 -13.17043 -12.92928 -12.83375 -12.79248 -12.43952 -12.33675 -12.11311 -11.99672 -11.91466 -11.57787 -11.50542 -11.39452 -11.27801 -11.01940 -10.75374 -10.62388 -10.16776 -9.87262 -9.60090 -9.38164 -9.11871 -9.00470 -8.65029 -8.52725 -6.93437 -6.29400 -4.01549 1.66493 2.34026 2.68609 2.71688 2.86980 3.19924 3.29533 3.32673 3.48730 3.60260 4.04253 4.16482 4.31993 4.34875 4.51446 4.66447 4.70910 4.71907 4.77638 4.80090 4.84862 5.05687 5.09544 5.13554 5.22729 5.31731 5.33566 5.42209 5.42536 5.52259 5.57415 5.59700 5.64323 5.71036 5.73915 5.89612 5.91968 5.97185 6.01391 6.21614 6.44499 6.57192 6.88006 7.47840 7.63139 7.93626 8.38954 8.41655 9.16479 10.79929 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003415 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.431094 B = 8197.786920 C = 8948.877813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 C -0.155 4.155 4 N -0.350 5.350 5 N -0.286 5.286 6 C 0.046 3.954 7 C -0.257 4.257 8 C 0.084 3.916 9 C 0.132 3.868 10 H 0.109 0.891 11 O -0.366 6.366 12 C 0.043 3.957 13 C -0.168 4.168 14 C 0.124 3.876 15 H 0.112 0.888 16 N -0.727 5.727 17 C 0.535 3.465 18 O -0.516 6.516 19 C -0.124 4.124 20 S -0.137 6.137 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.184 0.816 37 H 0.147 0.853 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.397 0.603 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.781 14.605 -5.096 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 C -0.213 4.213 4 N -0.134 5.134 5 N -0.107 5.107 6 C -0.140 4.140 7 C -0.287 4.287 8 C -0.044 4.044 9 C 0.072 3.928 10 H 0.127 0.873 11 O -0.285 6.285 12 C -0.034 4.034 13 C -0.207 4.207 14 C 0.017 3.983 15 H 0.130 0.870 16 N -0.383 5.383 17 C 0.321 3.679 18 O -0.390 6.390 19 C -0.275 4.275 20 S 0.089 5.911 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.200 0.800 37 H 0.165 0.835 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.234 0.766 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.470 14.001 -5.652 25.436 hybrid contribution -0.259 0.017 0.482 0.548 sum 20.210 14.018 -5.170 25.133 Atomic orbital electron populations 1.22181 0.93296 1.03069 1.03754 1.21773 0.95307 0.94411 0.84443 1.22074 1.01784 0.94530 1.02884 1.48897 1.30795 1.27641 1.06108 1.77354 1.22652 1.23771 0.86883 1.23815 0.95347 0.94592 1.00205 1.21137 1.08889 1.07850 0.90779 1.20474 0.94869 0.93586 0.95456 1.21855 0.98757 0.87859 0.84333 0.87302 1.89138 1.92915 1.30761 1.15708 1.23582 0.99620 0.91349 0.88827 1.23525 1.02444 0.98879 0.95840 1.22240 0.83084 0.98846 0.94098 0.86993 1.46111 1.10073 1.10087 1.71980 1.20291 0.88117 0.83459 0.76052 1.90690 1.72375 1.28268 1.47673 1.23270 0.93891 1.05407 1.04904 1.84723 1.11096 1.04525 1.90747 1.22314 0.92979 0.98263 1.53406 0.89421 1.24701 0.93974 0.99241 0.93296 1.69938 1.02974 1.33594 1.45129 0.86742 0.79906 0.84375 0.80862 1.19167 1.19910 1.15954 0.90741 0.90504 0.92229 0.85867 0.92023 0.90918 0.91705 0.79956 0.83516 0.88326 0.91322 0.89006 0.89543 0.76630 0.88711 0.88630 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.26 37.16 0.34 -1.30 16 2 C 0.14 1.40 2.46 -67.93 -0.17 1.23 16 3 C -0.15 -1.34 9.52 37.16 0.35 -0.99 16 4 N -0.35 -4.07 2.75 -50.69 -0.14 -4.21 16 5 N -0.29 -3.75 12.30 30.63 0.38 -3.37 16 6 C 0.05 0.53 12.03 -17.36 -0.21 0.32 16 7 C -0.26 -2.85 10.72 -40.01 -0.43 -3.28 16 8 C 0.08 0.93 4.63 -82.26 -0.38 0.55 16 9 C 0.13 1.20 3.66 -27.10 -0.10 1.10 16 10 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 11 O -0.37 -3.13 8.12 -35.23 -0.29 -3.42 16 12 C 0.04 0.27 7.64 38.10 0.29 0.57 16 13 C -0.17 -1.45 6.90 -25.00 -0.17 -1.62 16 14 C 0.12 1.32 3.29 -66.36 -0.22 1.10 16 15 H 0.11 1.28 7.61 -51.92 -0.40 0.88 16 16 N -0.73 -9.80 4.45 -52.29 -0.23 -10.03 16 17 C 0.53 9.56 7.85 -10.99 -0.09 9.48 16 18 O -0.52 -10.74 15.54 5.56 0.09 -10.65 16 19 C -0.12 -2.49 6.16 36.00 0.22 -2.27 16 20 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 21 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 22 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 23 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 24 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 25 Si 0.86 21.79 27.74 -169.99 -4.72 17.07 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 29 H 0.07 0.82 8.11 -51.92 -0.42 0.40 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.67 7.12 -51.93 -0.37 0.30 16 32 H 0.12 1.17 5.26 -51.92 -0.27 0.90 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.86 7.97 -51.93 -0.41 0.45 16 42 H 0.40 5.14 5.05 -40.82 -0.21 4.93 16 43 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.10 1.88 8.14 -51.91 -0.42 1.46 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -34.66 379.02 -7.48 -42.15 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.73 Total: 5.39 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.34 Total: -7.24 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.78 Total: -43.53 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.20 Total: -14.07 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.66 -7.48 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348069029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.257 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds