Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47500 * 2 1 4 4 N 1.46498 * 109.47196 * 120.00403 * 2 1 3 5 5 N 1.40086 * 126.03818 * 309.60154 * 4 2 1 6 6 C 1.30834 * 108.20880 * 180.23596 * 5 4 2 7 7 C 1.39878 * 108.20030 * 359.78495 * 6 5 4 8 8 C 1.34951 * 126.03993 * 129.45563 * 4 2 1 9 9 C 1.50703 * 126.12280 * 0.03608 * 8 4 2 10 10 H 1.09003 * 110.33103 * 144.74203 * 9 8 4 11 11 O 1.44423 * 110.46869 * 22.42328 * 9 8 4 12 12 C 1.44424 * 105.27295 * 200.61091 * 11 9 8 13 13 C 1.54798 * 104.85756 * 40.46210 * 12 11 9 14 14 C 1.54484 * 110.36840 * 266.98866 * 9 8 4 15 15 H 1.09010 * 110.50618 * 261.70469 * 14 9 8 16 16 N 1.46499 * 110.51339 * 24.27297 * 14 9 8 17 17 C 1.34777 * 120.00376 * 203.09380 * 16 14 9 18 18 O 1.21281 * 119.99605 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00124 * 180.02562 * 17 16 14 20 20 S 1.80996 * 109.47093 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99764 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00398 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00256 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99880 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47049 * 89.99651 * 25 23 21 27 27 H 1.48505 * 109.47106 * 209.99965 * 25 23 21 28 28 H 1.48499 * 109.46929 * 329.99656 * 25 23 21 29 29 H 1.09007 * 109.46804 * 299.99782 * 1 2 3 30 30 H 1.08994 * 109.47099 * 59.99781 * 1 2 3 31 31 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46804 * 240.00218 * 2 1 3 33 33 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46723 * 300.00478 * 3 2 1 35 35 H 1.09000 * 109.47069 * 59.99936 * 3 2 1 36 36 H 1.07999 * 125.90054 * 179.82207 * 6 5 4 37 37 H 1.07999 * 126.04216 * 180.02562 * 7 6 5 38 38 H 1.09006 * 110.37193 * 159.33971 * 12 11 9 39 39 H 1.09000 * 110.37506 * 281.56666 * 12 11 9 40 40 H 1.09000 * 110.60984 * 217.50866 * 13 12 11 41 41 H 1.09005 * 110.55772 * 94.70458 * 13 12 11 42 42 H 0.97000 * 119.99982 * 23.10299 * 16 14 9 43 43 H 1.08994 * 109.47374 * 60.00383 * 19 17 16 44 44 H 1.09001 * 109.46808 * 300.00285 * 19 17 16 45 45 H 0.96999 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.6123 -0.4438 2.5139 6 6 2.2719 -1.2522 3.3032 7 6 3.1144 -2.0422 2.5142 8 6 2.9368 -1.6791 1.2228 9 6 3.6430 -2.2682 0.0289 10 1 4.6677 -2.5342 0.2883 11 8 3.6292 -1.3379 -1.0757 12 6 3.8588 -2.1421 -2.2532 13 6 3.0254 -3.4265 -2.0253 14 6 2.8803 -3.5076 -0.4893 15 1 3.3361 -4.4225 -0.1104 16 7 1.4688 -3.4406 -0.1026 17 6 0.7366 -4.5696 -0.0265 18 8 1.2464 -5.6410 -0.2776 19 6 -0.7154 -4.5005 0.3707 20 16 -1.4177 -6.1687 0.3822 21 6 -3.0716 -5.8011 0.8660 22 1 -3.3647 -4.7787 1.0541 23 6 -3.9978 -6.8253 1.0056 24 7 -5.2332 -6.5507 1.3676 25 14 -3.4908 -8.5937 0.6812 26 1 -2.9952 -9.2055 1.9403 27 1 -4.6613 -9.3612 0.1850 28 1 -2.4128 -8.6201 -0.3398 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.1811 -1.3015 4.3783 37 1 3.7874 -2.8072 2.8722 38 1 3.5128 -1.6179 -3.1441 39 1 4.9170 -2.3871 -2.3450 40 1 3.5549 -4.3000 -2.4057 41 1 2.0469 -3.3366 -2.4972 42 1 1.0612 -2.5837 0.0984 43 1 -1.2586 -3.8822 -0.3438 44 1 -0.7994 -4.0645 1.3662 45 1 -5.8806 -7.2665 1.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348069029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -23.136283 kcal Electronic energy + Delta-G solvation = -28388.242262 eV Core-core repulsion = 24533.082083 eV Total energy + Delta-G solvation = -3855.160179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66268 -41.03878 -39.81902 -36.55738 -35.72281 -34.70429 -32.74115 -32.51143 -30.75726 -30.49046 -28.50693 -28.25284 -27.87276 -24.48042 -23.54065 -22.91438 -22.22700 -21.18360 -20.50574 -20.00039 -18.35921 -18.15283 -17.49899 -17.11351 -16.88314 -16.72761 -16.24122 -16.04897 -15.99740 -15.73152 -15.41248 -15.06383 -14.97698 -14.78227 -14.28963 -14.10061 -13.92324 -13.63930 -13.40551 -13.33245 -13.16345 -13.05952 -13.02381 -12.86239 -12.74964 -12.55670 -12.36721 -12.23926 -12.12518 -11.88433 -11.54740 -11.19714 -11.11822 -10.84614 -10.61388 -10.30777 -10.18774 -9.50209 -9.04189 -8.54059 -6.26232 0.81561 0.91969 1.30485 1.42594 1.43281 1.51981 1.54780 1.85168 2.07211 2.23085 2.60114 2.65343 2.84099 3.29843 3.38627 3.56702 3.69870 3.80652 3.96193 4.02311 4.05905 4.09071 4.11810 4.17421 4.29490 4.32118 4.52537 4.58914 4.62666 4.65238 4.75289 4.79237 4.82253 4.88057 4.91688 5.03218 5.11453 5.17460 5.21604 5.27981 5.63195 5.67415 5.74492 6.07792 6.07962 6.21589 6.76462 6.90151 7.01180 8.58778 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003415 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.431094 B = 8197.786920 C = 8948.877813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 C -0.147 4.147 4 N -0.354 5.354 5 N -0.320 5.320 6 C 0.035 3.965 7 C -0.268 4.268 8 C 0.075 3.925 9 C 0.141 3.859 10 H 0.137 0.863 11 O -0.373 6.373 12 C 0.048 3.952 13 C -0.165 4.165 14 C 0.115 3.885 15 H 0.108 0.892 16 N -0.708 5.708 17 C 0.542 3.458 18 O -0.547 6.547 19 C -0.115 4.115 20 S -0.155 6.155 21 C -0.535 4.535 22 H 0.056 0.944 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.916 3.084 26 H -0.261 1.261 27 H -0.257 1.257 28 H -0.234 1.234 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.202 0.798 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.401 0.599 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.116 14.693 -6.446 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 C -0.205 4.205 4 N -0.138 5.138 5 N -0.141 5.141 6 C -0.149 4.149 7 C -0.298 4.298 8 C -0.053 4.053 9 C 0.081 3.919 10 H 0.155 0.845 11 O -0.292 6.292 12 C -0.028 4.028 13 C -0.204 4.204 14 C 0.010 3.990 15 H 0.125 0.875 16 N -0.362 5.362 17 C 0.327 3.673 18 O -0.424 6.424 19 C -0.266 4.266 20 S 0.071 5.929 21 C -0.683 4.683 22 H 0.075 0.925 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.186 1.186 27 H -0.181 1.181 28 H -0.158 1.158 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.219 0.781 37 H 0.181 0.819 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.238 0.762 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.821 14.139 -7.008 27.746 hybrid contribution -0.945 0.154 0.908 1.320 sum 21.875 14.293 -6.101 26.834 Atomic orbital electron populations 1.22175 0.93695 1.02042 1.04175 1.21938 0.94997 0.95164 0.84169 1.22017 1.01460 0.93738 1.03293 1.49068 1.30852 1.27885 1.05997 1.77305 1.23889 1.25027 0.87890 1.24262 0.95112 0.94318 1.01257 1.21448 1.09177 1.08225 0.90913 1.20892 0.94730 0.93334 0.96353 1.21904 0.99390 0.86772 0.83815 0.84547 1.89135 1.93062 1.30923 1.16120 1.23736 1.00628 0.89947 0.88487 1.23493 1.02392 1.00722 0.93763 1.22545 0.80909 0.99677 0.95901 0.87452 1.45962 1.11202 1.08788 1.70290 1.19790 0.87201 0.84144 0.76166 1.90678 1.72615 1.29480 1.49604 1.23248 0.95794 1.01921 1.05603 1.84520 1.08847 1.08923 1.90598 1.22461 0.95270 0.97070 1.53477 0.92542 1.25589 0.93924 1.03402 0.92936 1.70020 1.04110 1.35284 1.46065 0.85850 0.80099 0.79355 0.80957 1.18566 1.18118 1.15762 0.92185 0.88249 0.93883 0.85086 0.92325 0.88714 0.93069 0.78141 0.81902 0.86678 0.88917 0.88080 0.90938 0.76159 0.87596 0.88463 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.26 71.98 0.67 -2.50 16 2 C 0.14 2.54 2.46 44.99 0.11 2.65 16 3 C -0.15 -2.34 9.52 71.98 0.69 -1.66 16 4 N -0.35 -7.93 2.75 -314.30 -0.86 -8.79 16 5 N -0.32 -8.37 12.30 -57.02 -0.70 -9.07 16 6 C 0.04 0.80 12.03 85.24 1.03 1.83 16 7 C -0.27 -5.62 10.72 21.99 0.24 -5.38 16 8 C 0.08 1.55 4.63 41.40 0.19 1.74 16 9 C 0.14 2.18 3.66 30.35 0.11 2.29 16 10 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 11 O -0.37 -5.19 8.12 -148.98 -1.21 -6.40 16 12 C 0.05 0.44 7.64 72.60 0.55 0.99 16 13 C -0.16 -2.42 6.90 31.72 0.22 -2.20 16 14 C 0.12 2.21 3.29 46.01 0.15 2.36 16 15 H 0.11 2.23 7.61 -2.38 -0.02 2.22 16 16 N -0.71 -18.26 4.45 -437.73 -1.95 -20.21 16 17 C 0.54 19.01 7.85 87.66 0.69 19.70 16 18 O -0.55 -22.34 15.54 -3.03 -0.05 -22.39 16 19 C -0.11 -4.61 6.16 71.23 0.44 -4.17 16 20 S -0.16 -7.93 18.55 -56.49 -1.05 -8.97 16 21 C -0.54 -31.77 10.04 67.95 0.68 -31.09 16 22 H 0.06 3.58 8.03 -2.91 -0.02 3.56 16 23 C 0.05 2.78 5.50 84.86 0.47 3.25 16 24 N -0.92 -56.41 13.97 21.65 0.30 -56.11 16 25 Si 0.92 44.89 27.74 68.60 1.90 46.80 16 26 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.23 -11.33 6.74 99.48 0.67 -10.66 16 29 H 0.06 1.33 8.11 -2.38 -0.02 1.32 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 0.96 7.12 -2.39 -0.02 0.94 16 32 H 0.13 2.21 5.26 -2.38 -0.01 2.20 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.29 7.97 -2.38 -0.02 1.28 16 42 H 0.40 10.00 5.05 -92.71 -0.47 9.53 16 43 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.10 3.87 8.14 -2.40 -0.02 3.85 16 45 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -75.73 379.02 3.11 -72.63 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.49 Total: 24.70 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 6.23 Total: -12.18 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -3.21 Total: -94.17 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.26 Total: -28.79 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.05 Total: -8.97 kcal Total: -75.73 3.11 -72.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348069029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.490 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds