Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.08993 * 109.47008 * 304.99265 * 3 2 1 5 5 C 1.50703 * 109.46787 * 184.99864 * 3 2 1 6 6 H 1.07998 * 119.99995 * 239.99615 * 5 3 2 7 7 C 1.37882 * 120.00154 * 60.00183 * 5 3 2 8 8 N 1.31507 * 119.99654 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99731 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47324 * 90.00041 * 9 7 5 11 11 H 1.48500 * 109.46789 * 209.99468 * 9 7 5 12 12 H 1.48498 * 109.47557 * 329.99614 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00040 * 3 2 1 14 14 C 1.34777 * 119.99524 * 275.00105 * 13 3 2 15 15 O 1.21363 * 120.00410 * 359.97438 * 14 13 3 16 16 C 1.49313 * 119.99573 * 180.02562 * 14 13 3 17 17 O 1.21383 * 120.00028 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99574 * 179.97438 * 16 14 13 19 19 C 1.38745 * 119.99768 * 179.72180 * 18 16 14 20 20 N 1.29693 * 124.94415 * 359.97438 * 19 18 16 21 21 C 1.31911 * 116.92386 * 179.83784 * 20 19 18 22 22 C 1.33527 * 114.56981 * 0.44791 * 21 20 19 23 23 C 1.50696 * 125.97514 * 179.76563 * 22 21 20 24 24 C 1.53002 * 109.47086 * 60.02067 * 23 22 21 25 25 C 1.53001 * 109.47425 * 180.02562 * 23 22 21 26 26 C 1.53004 * 109.47305 * 300.02540 * 23 22 21 27 27 S 1.70969 * 124.94432 * 180.27972 * 19 18 16 28 28 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46935 * 300.00346 * 1 2 3 30 30 H 1.08998 * 109.46966 * 59.99939 * 1 2 3 31 31 H 1.08992 * 109.47367 * 239.99451 * 2 1 3 32 32 H 1.09006 * 109.47162 * 119.99830 * 2 1 3 33 33 H 0.97001 * 119.99594 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00583 * 94.99678 * 13 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 18 16 14 36 36 H 1.08006 * 122.71197 * 180.20880 * 21 20 19 37 37 H 1.09008 * 109.46692 * 60.00036 * 24 23 22 38 38 H 1.08998 * 109.47424 * 179.97438 * 24 23 22 39 39 H 1.08993 * 109.47158 * 300.00420 * 24 23 22 40 40 H 1.09003 * 109.47015 * 59.99840 * 25 23 22 41 41 H 1.09000 * 109.46919 * 180.02562 * 25 23 22 42 42 H 1.09003 * 109.46643 * 300.00128 * 25 23 22 43 43 H 1.09006 * 109.46971 * 59.99337 * 26 23 22 44 44 H 1.08998 * 109.46958 * 179.97438 * 26 23 22 45 45 H 1.09003 * 109.46759 * 299.99930 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1434 0.8783 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8811 -1.3816 10 1 6.5549 -0.3503 -0.7600 11 1 6.3830 0.9222 -2.8171 12 1 6.5570 2.0737 -0.6901 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3398 2.6326 0.4333 16 6 0.0404 3.3325 2.6425 17 8 0.8156 3.3646 3.5759 18 7 -1.1768 3.8998 2.7573 19 6 -1.5458 4.5156 3.9446 20 7 -0.7983 4.6005 5.0010 21 6 -1.3081 5.2255 6.0448 22 6 -2.5496 5.6833 5.8660 23 6 -3.3744 6.4267 6.8849 24 6 -2.6518 7.7148 7.2844 25 6 -4.7380 6.7723 6.2833 26 6 -3.5707 5.5476 8.1217 27 16 -3.0550 5.2664 4.2305 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8294 -0.0619 -2.9494 34 1 2.2719 2.1232 1.9978 35 1 -1.7964 3.8738 2.0115 36 1 -0.7666 5.3530 6.9706 37 1 -2.5119 8.3411 6.4032 38 1 -3.2485 8.2527 8.0210 39 1 -1.6804 7.4684 7.7129 40 1 -5.2528 5.8546 5.9987 41 1 -5.3343 7.3104 7.0202 42 1 -4.5981 7.3986 5.4022 43 1 -2.5992 5.3012 8.5503 44 1 -4.1669 6.0854 8.8588 45 1 -4.0855 4.6299 7.8371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435020243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = -30.319881 kcal Electronic energy + Delta-G solvation = -26769.262952 eV Core-core repulsion = 22913.791269 eV Total energy + Delta-G solvation = -3855.471683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81740 -39.70239 -38.30236 -37.12577 -35.53497 -34.64430 -32.44165 -31.02389 -29.12009 -27.77729 -27.62487 -27.35055 -26.04161 -24.02379 -22.94754 -21.78859 -20.36521 -19.60375 -19.47767 -18.81252 -17.42868 -16.69890 -16.28843 -15.98985 -15.77711 -15.29808 -15.15332 -14.94164 -14.38551 -14.33214 -14.17677 -13.94141 -13.61746 -13.34281 -12.77070 -12.69948 -12.66848 -12.14367 -12.08101 -11.93965 -11.75900 -11.63832 -11.48137 -11.40347 -11.29933 -11.03196 -11.00717 -10.87335 -10.80791 -10.39201 -10.29048 -9.78283 -9.68530 -9.40637 -9.16054 -8.99542 -8.59159 -8.31566 -8.07719 -6.19252 -4.28893 0.52065 0.77071 1.47608 1.82267 2.56895 2.82915 3.23058 3.30030 3.33162 3.67517 3.78168 4.22330 4.30288 4.44805 4.54913 4.63155 4.93088 5.05289 5.13196 5.15694 5.23639 5.36454 5.36677 5.48813 5.52788 5.58360 5.69039 5.78654 5.90324 5.91449 6.10592 6.28946 6.33724 6.52378 6.71674 6.92137 7.02544 7.10258 7.24203 7.40101 7.58235 7.65998 7.77116 7.92446 8.05561 8.38974 8.57584 8.82349 9.37913 10.86140 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.002209 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.349916 B =12675.138755 C =13235.283987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.499 3.501 15 O -0.529 6.529 16 C 0.501 3.499 17 O -0.453 6.453 18 N -0.616 5.616 19 C 0.268 3.732 20 N -0.475 5.475 21 C 0.070 3.930 22 C -0.233 4.233 23 C 0.016 3.984 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.137 4.137 27 S 0.131 5.869 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.433 0.567 36 H 0.175 0.825 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.301 11.597 16.629 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.313 5.313 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.280 3.720 17 O -0.319 6.319 18 N -0.269 5.269 19 C -0.100 4.100 20 N -0.196 5.196 21 C -0.082 4.082 22 C -0.355 4.355 23 C 0.013 3.987 24 C -0.196 4.196 25 C -0.208 4.208 26 C -0.195 4.195 27 S 0.383 5.617 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.273 0.727 36 H 0.192 0.808 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.499 11.300 15.682 25.414 hybrid contribution 1.490 -0.017 0.590 1.603 sum -15.009 11.283 16.272 24.847 Atomic orbital electron populations 1.21858 0.98304 0.98476 1.01003 1.21973 0.92658 0.99346 1.02852 1.19048 0.94862 0.89410 0.79964 0.92634 1.21204 0.90251 1.39485 1.06603 0.91727 1.24870 0.98870 0.94588 0.95211 1.69878 1.35280 1.37361 1.09368 0.86398 0.84483 0.78607 0.77380 1.20439 1.21024 1.19751 1.46476 1.13232 1.52296 1.19331 1.19466 0.84653 0.81511 0.86683 1.90746 1.51153 1.59601 1.39294 1.21229 0.81362 0.79416 0.90033 1.90845 1.48989 1.52787 1.39291 1.42822 1.17924 1.53823 1.12347 1.23681 0.94981 1.00082 0.91303 1.66599 1.33874 1.20384 0.98777 1.21472 0.92270 0.96776 0.97639 1.25735 1.00057 1.12012 0.97686 1.18949 0.93548 0.94219 0.92004 1.21913 1.00389 0.95706 1.01550 1.22006 0.95552 1.02062 1.01179 1.21914 1.02284 0.99409 0.95942 1.83886 1.14451 1.53324 1.10000 0.95419 0.94679 0.92887 0.87764 0.94610 0.92422 0.76285 0.72724 0.80834 0.92289 0.91913 0.92121 0.92076 0.91481 0.92073 0.92128 0.91911 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.52 37.16 0.32 -2.62 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.40 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.36 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.66 -14.04 5.01 -55.41 -0.28 -14.32 16 14 C 0.50 9.80 6.45 -11.65 -0.08 9.72 16 15 O -0.53 -11.01 13.61 5.49 0.07 -10.94 16 16 C 0.50 8.86 7.85 -11.65 -0.09 8.77 16 17 O -0.45 -8.98 15.10 5.47 0.08 -8.89 16 18 N -0.62 -8.94 5.39 -13.55 -0.07 -9.01 16 19 C 0.27 3.73 8.01 -87.54 -0.70 3.03 16 20 N -0.48 -7.32 8.64 -15.17 -0.13 -7.45 16 21 C 0.07 0.82 10.60 -19.17 -0.20 0.62 16 22 C -0.23 -2.23 5.15 -35.96 -0.19 -2.42 16 23 C 0.02 0.11 0.92 -155.66 -0.14 -0.04 16 24 C -0.14 -0.84 8.35 37.16 0.31 -0.53 16 25 C -0.15 -0.89 7.59 37.16 0.28 -0.61 16 26 C -0.14 -0.83 8.35 37.16 0.31 -0.52 16 27 S 0.13 1.30 21.85 -107.50 -2.35 -1.05 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.72 5.64 -51.93 -0.29 0.42 16 30 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 31 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.40 8.08 8.01 -40.82 -0.33 7.75 16 35 H 0.43 5.27 8.29 -40.82 -0.34 4.93 16 36 H 0.17 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.37 7.99 -51.93 -0.42 -0.04 16 40 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 43 H 0.06 0.37 7.99 -51.93 -0.42 -0.05 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -30.26 381.63 -8.85 -39.11 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.65 Total: 8.73 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.88 Total: 6.02 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.14 Total: -54.15 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.16 Total: -19.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.35 Total: -1.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.26 -8.85 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435020243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.791 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds