Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.08993 * 109.47008 * 304.99265 * 3 2 1 5 5 C 1.50703 * 109.46787 * 184.99864 * 3 2 1 6 6 H 1.07998 * 119.99995 * 239.99615 * 5 3 2 7 7 C 1.37882 * 120.00154 * 60.00183 * 5 3 2 8 8 N 1.31507 * 119.99654 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99731 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47324 * 90.00041 * 9 7 5 11 11 H 1.48500 * 109.46789 * 209.99468 * 9 7 5 12 12 H 1.48498 * 109.47557 * 329.99614 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00040 * 3 2 1 14 14 C 1.34777 * 119.99524 * 275.00105 * 13 3 2 15 15 O 1.21363 * 120.00410 * 359.97438 * 14 13 3 16 16 C 1.49313 * 119.99573 * 180.02562 * 14 13 3 17 17 O 1.21383 * 120.00028 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99574 * 179.97438 * 16 14 13 19 19 C 1.38745 * 119.99768 * 179.72180 * 18 16 14 20 20 N 1.29693 * 124.94415 * 359.97438 * 19 18 16 21 21 C 1.31911 * 116.92386 * 179.83784 * 20 19 18 22 22 C 1.33527 * 114.56981 * 0.44791 * 21 20 19 23 23 C 1.50696 * 125.97514 * 179.76563 * 22 21 20 24 24 C 1.53002 * 109.47086 * 60.02067 * 23 22 21 25 25 C 1.53001 * 109.47425 * 180.02562 * 23 22 21 26 26 C 1.53004 * 109.47305 * 300.02540 * 23 22 21 27 27 S 1.70969 * 124.94432 * 180.27972 * 19 18 16 28 28 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46935 * 300.00346 * 1 2 3 30 30 H 1.08998 * 109.46966 * 59.99939 * 1 2 3 31 31 H 1.08992 * 109.47367 * 239.99451 * 2 1 3 32 32 H 1.09006 * 109.47162 * 119.99830 * 2 1 3 33 33 H 0.97001 * 119.99594 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00583 * 94.99678 * 13 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 18 16 14 36 36 H 1.08006 * 122.71197 * 180.20880 * 21 20 19 37 37 H 1.09008 * 109.46692 * 60.00036 * 24 23 22 38 38 H 1.08998 * 109.47424 * 179.97438 * 24 23 22 39 39 H 1.08993 * 109.47158 * 300.00420 * 24 23 22 40 40 H 1.09003 * 109.47015 * 59.99840 * 25 23 22 41 41 H 1.09000 * 109.46919 * 180.02562 * 25 23 22 42 42 H 1.09003 * 109.46643 * 300.00128 * 25 23 22 43 43 H 1.09006 * 109.46971 * 59.99337 * 26 23 22 44 44 H 1.08998 * 109.46958 * 179.97438 * 26 23 22 45 45 H 1.09003 * 109.46759 * 299.99930 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1434 0.8783 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8811 -1.3816 10 1 6.5549 -0.3503 -0.7600 11 1 6.3830 0.9222 -2.8171 12 1 6.5570 2.0737 -0.6901 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3398 2.6326 0.4333 16 6 0.0404 3.3325 2.6425 17 8 0.8156 3.3646 3.5759 18 7 -1.1768 3.8998 2.7573 19 6 -1.5458 4.5156 3.9446 20 7 -0.7983 4.6005 5.0010 21 6 -1.3081 5.2255 6.0448 22 6 -2.5496 5.6833 5.8660 23 6 -3.3744 6.4267 6.8849 24 6 -2.6518 7.7148 7.2844 25 6 -4.7380 6.7723 6.2833 26 6 -3.5707 5.5476 8.1217 27 16 -3.0550 5.2664 4.2305 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8294 -0.0619 -2.9494 34 1 2.2719 2.1232 1.9978 35 1 -1.7964 3.8738 2.0115 36 1 -0.7666 5.3530 6.9706 37 1 -2.5119 8.3411 6.4032 38 1 -3.2485 8.2527 8.0210 39 1 -1.6804 7.4684 7.7129 40 1 -5.2528 5.8546 5.9987 41 1 -5.3343 7.3104 7.0202 42 1 -4.5981 7.3986 5.4022 43 1 -2.5992 5.3012 8.5503 44 1 -4.1669 6.0854 8.8588 45 1 -4.0855 4.6299 7.8371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435020243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = -49.311943 kcal Electronic energy + Delta-G solvation = -26770.086510 eV Core-core repulsion = 22913.791269 eV Total energy + Delta-G solvation = -3856.295241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12510 -40.87122 -39.69093 -37.92532 -37.23299 -35.94184 -34.33268 -32.84190 -30.06613 -29.19093 -28.25146 -28.09201 -27.30630 -25.48473 -24.53843 -22.99528 -21.65875 -21.17712 -20.65857 -20.07188 -18.64533 -17.96141 -17.84082 -17.37192 -17.16275 -16.87144 -16.19029 -16.12000 -15.98048 -15.33763 -15.07422 -14.80911 -14.68147 -14.66245 -14.62770 -13.88920 -13.51681 -13.22155 -13.17868 -13.14779 -13.02345 -12.82376 -12.67959 -12.65626 -12.55470 -12.31322 -12.17855 -12.17168 -12.12626 -11.73198 -11.61995 -11.59371 -11.12242 -10.97814 -10.58006 -10.31000 -10.27316 -9.88250 -9.26942 -8.19852 -6.36630 -0.49031 -0.16984 0.43975 0.60436 1.29963 1.44464 1.45795 1.55902 1.81070 2.20047 2.36077 2.52800 3.09904 3.34371 3.56783 3.72239 3.91730 4.04703 4.36555 4.47840 4.52949 4.53948 4.68913 4.70380 4.79941 4.80133 4.90184 5.00439 5.03940 5.04239 5.06416 5.14438 5.21434 5.29685 5.32338 5.37371 5.42583 5.44234 5.53831 5.57743 5.71305 5.79798 6.09700 6.30727 6.63653 6.70023 6.88618 7.04339 7.34738 8.85306 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.002209 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.349916 B =12675.138755 C =13235.283987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.018 0.982 5 C -0.554 4.554 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.669 5.669 14 C 0.502 3.498 15 O -0.541 6.541 16 C 0.511 3.489 17 O -0.479 6.479 18 N -0.604 5.604 19 C 0.221 3.779 20 N -0.511 5.511 21 C 0.043 3.957 22 C -0.212 4.212 23 C 0.014 3.986 24 C -0.137 4.137 25 C -0.152 4.152 26 C -0.136 4.136 27 S 0.201 5.799 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.408 0.592 35 H 0.442 0.558 36 H 0.187 0.813 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.747 12.761 18.415 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.036 0.964 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.318 5.318 14 C 0.281 3.719 15 O -0.421 6.421 16 C 0.289 3.711 17 O -0.348 6.348 18 N -0.258 5.258 19 C -0.145 4.145 20 N -0.233 5.233 21 C -0.107 4.107 22 C -0.335 4.335 23 C 0.011 3.989 24 C -0.195 4.195 25 C -0.210 4.210 26 C -0.195 4.195 27 S 0.454 5.546 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.284 0.716 36 H 0.204 0.796 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.996 12.488 17.482 28.025 hybrid contribution 1.756 -0.254 0.137 1.780 sum -16.240 12.234 17.619 26.904 Atomic orbital electron populations 1.21713 0.96466 0.99770 1.00458 1.21829 0.94252 0.98462 1.01733 1.18680 0.94127 0.89634 0.80135 0.96387 1.21506 0.91210 1.39623 1.06917 0.91537 1.25665 1.03148 0.94174 0.94866 1.70001 1.36961 1.37851 1.09774 0.85398 0.79256 0.78736 0.77290 1.19740 1.20790 1.19408 1.46256 1.14174 1.52912 1.18490 1.19772 0.83859 0.80839 0.87413 1.90732 1.51386 1.59838 1.40107 1.20588 0.82319 0.79580 0.88586 1.90834 1.50074 1.54271 1.39655 1.42530 1.16829 1.53152 1.13260 1.23826 0.97307 1.02383 0.90949 1.66525 1.35905 1.20964 0.99890 1.21653 0.93437 0.98007 0.97597 1.26324 0.99468 1.09561 0.98133 1.19150 0.93738 0.94448 0.91607 1.21919 1.00606 0.95143 1.01808 1.22044 0.95000 1.02258 1.01694 1.21919 1.02522 0.99202 0.95813 1.83640 1.10794 1.50923 1.09264 0.93166 0.94227 0.94295 0.90131 0.94276 0.92317 0.75684 0.71627 0.79594 0.92906 0.89966 0.92328 0.92174 0.89552 0.92204 0.92332 0.89970 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.52 71.98 0.61 -4.76 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 13.93 2.24 44.25 0.10 14.03 16 4 H 0.02 1.05 7.58 -2.39 -0.02 1.03 16 5 C -0.55 -29.41 8.73 25.60 0.22 -29.19 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -50.38 11.29 21.45 0.24 -50.14 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 N -0.67 -29.01 5.01 -447.58 -2.24 -31.26 16 14 C 0.50 20.11 6.45 87.23 0.56 20.67 16 15 O -0.54 -22.93 13.61 -3.29 -0.04 -22.98 16 16 C 0.51 18.36 7.85 87.23 0.68 19.04 16 17 O -0.48 -19.40 15.10 -3.35 -0.05 -19.45 16 18 N -0.60 -17.50 5.39 -315.12 -1.70 -19.20 16 19 C 0.22 6.07 8.01 179.27 1.44 7.50 16 20 N -0.51 -15.69 8.64 -201.90 -1.74 -17.43 16 21 C 0.04 0.98 10.60 83.61 0.89 1.87 16 22 C -0.21 -3.68 5.15 24.62 0.13 -3.56 16 23 C 0.01 0.15 0.92 -52.93 -0.05 0.10 16 24 C -0.14 -1.30 8.35 71.98 0.60 -0.70 16 25 C -0.15 -1.32 7.59 71.98 0.55 -0.77 16 26 C -0.14 -1.29 8.35 71.98 0.60 -0.69 16 27 S 0.20 3.60 21.85 -56.49 -1.23 2.37 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.61 5.64 -2.39 -0.01 1.60 16 30 H 0.04 1.73 7.85 -2.39 -0.02 1.71 16 31 H 0.08 4.28 5.95 -2.39 -0.01 4.27 16 32 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 33 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.41 16.80 8.01 -92.71 -0.74 16.05 16 35 H 0.44 10.61 8.29 -92.71 -0.77 9.84 16 36 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.06 0.60 7.99 -2.39 -0.02 0.58 16 40 H 0.06 0.55 8.00 -2.39 -0.02 0.53 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 0.55 8.00 -2.39 -0.02 0.53 16 43 H 0.06 0.59 7.99 -2.38 -0.02 0.57 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -66.21 381.63 1.71 -64.50 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.48 Total: 30.02 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 6.94 Total: 19.42 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -5.44 Total: -118.03 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -0.10 Total: -42.42 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.23 Total: 2.37 kcal Total: -66.21 1.71 -64.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435020243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.189 kcal (2) G-P(sol) polarization free energy of solvation -66.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds