Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47199 * 2 1 4 4 C 1.50696 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.28973 * 124.83505 * 89.99928 * 4 3 2 6 6 C 1.31785 * 117.21107 * 180.02562 * 5 4 3 7 7 C 1.50697 * 122.85918 * 180.02562 * 6 5 4 8 8 C 1.34520 * 114.28433 * 0.02562 * 6 5 4 9 9 N 1.39417 * 126.07987 * 179.97438 * 8 6 5 10 10 C 1.34779 * 120.00170 * 180.02562 * 9 8 6 11 11 O 1.21420 * 119.99895 * 359.97438 * 10 9 8 12 12 C 1.49262 * 119.99939 * 180.02562 * 10 9 8 13 13 O 1.21372 * 119.99818 * 5.92282 * 12 10 9 14 14 N 1.34777 * 119.99839 * 185.92250 * 12 10 9 15 15 C 1.46492 * 120.00095 * 356.42570 * 14 12 10 16 16 C 1.46500 * 119.99798 * 176.42818 * 14 12 10 17 17 H 1.09001 * 109.47068 * 0.02562 * 16 14 12 18 18 C 1.53003 * 109.47047 * 239.99826 * 16 14 12 19 19 C 1.50703 * 109.46999 * 119.99794 * 16 14 12 20 20 H 1.07998 * 120.00142 * 0.02562 * 19 16 14 21 21 C 1.37880 * 119.99859 * 179.97438 * 19 16 14 22 22 N 1.31518 * 120.00019 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99775 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.46923 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47284 * 300.00135 * 23 21 19 26 26 H 1.48503 * 109.47115 * 60.00481 * 23 21 19 27 27 S 1.70954 * 124.83794 * 270.34011 * 4 3 2 28 28 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46685 * 299.99379 * 1 2 3 30 30 H 1.09001 * 109.47710 * 59.99694 * 1 2 3 31 31 H 1.09008 * 109.46688 * 240.00339 * 2 1 3 32 32 H 1.08995 * 109.47325 * 120.00466 * 2 1 3 33 33 H 1.08994 * 109.47038 * 60.00020 * 3 2 1 34 34 H 1.09001 * 109.47040 * 300.00716 * 3 2 1 35 35 H 1.09001 * 109.46851 * 269.97267 * 7 6 5 36 36 H 1.08994 * 109.47201 * 29.97379 * 7 6 5 37 37 H 1.08998 * 109.47115 * 149.97665 * 7 6 5 38 38 H 0.96998 * 120.00087 * 0.02562 * 9 8 6 39 39 H 1.09000 * 109.47352 * 275.98759 * 15 14 12 40 40 H 1.09002 * 109.47514 * 35.98851 * 15 14 12 41 41 H 1.08998 * 109.47365 * 155.98934 * 15 14 12 42 42 H 1.08993 * 109.47108 * 300.00051 * 18 16 14 43 43 H 1.08995 * 109.46740 * 60.00192 * 18 16 14 44 44 H 1.08996 * 109.46677 * 180.02562 * 18 16 14 45 45 H 0.96998 * 119.99833 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2833 1.4426 -1.0596 6 6 5.5895 1.4421 -0.8853 7 6 6.5674 1.4427 -2.0319 8 6 5.9757 1.4409 0.4033 9 7 7.2908 1.4395 0.8663 10 6 7.5389 1.4379 2.1910 11 8 6.6170 1.4380 2.9813 12 6 8.9468 1.4371 2.6867 13 8 9.8664 1.5464 1.9021 14 7 9.1969 1.3150 4.0054 15 6 8.0867 1.2619 4.9596 16 6 10.5791 1.2355 4.4845 17 1 11.2614 1.2915 3.6363 18 6 10.7880 -0.0891 5.2213 19 6 10.8517 2.3816 5.4243 20 1 10.0731 3.0973 5.6432 21 6 12.0947 2.5157 6.0056 22 7 13.0427 1.6438 5.7394 23 14 12.4324 3.9359 7.1711 24 1 13.8331 3.8547 7.6576 25 1 12.2299 5.2217 6.4563 26 1 11.5025 3.8599 8.3264 27 16 4.5242 1.4339 1.4021 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9564 -0.8899 35 1 6.8032 0.4152 -2.3088 36 1 6.1260 1.9569 -2.8855 37 1 7.4803 1.9563 -1.7305 38 1 8.0272 1.4398 0.2350 39 1 7.7692 2.2755 5.2045 40 1 7.2528 0.7170 4.5171 41 1 8.4118 0.7538 5.8675 42 1 10.1057 -0.1446 6.0694 43 1 10.5908 -0.9179 4.5415 44 1 11.8162 -0.1480 5.5781 45 1 13.9173 1.7384 6.1481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439320089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -43.581104 kcal Electronic energy + Delta-G solvation = -26942.668302 eV Core-core repulsion = 23086.621569 eV Total energy + Delta-G solvation = -3856.046733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.23712 -40.98194 -39.81546 -37.72846 -36.72851 -35.64749 -34.73407 -32.28823 -31.50807 -29.16133 -28.59780 -27.79030 -27.33207 -25.73996 -24.13769 -22.89508 -22.22196 -21.56225 -20.60600 -19.31764 -18.51140 -18.43790 -17.85113 -17.44536 -17.37331 -16.85047 -16.27380 -16.17673 -15.83980 -15.28804 -15.11226 -15.00368 -14.63318 -14.52605 -14.24433 -14.11599 -13.67176 -13.51351 -13.41883 -13.31262 -13.01587 -12.90242 -12.79302 -12.74497 -12.68162 -12.46203 -12.36158 -12.31345 -12.21483 -12.10620 -11.91532 -11.59814 -11.26127 -10.76500 -10.56222 -10.35394 -10.06811 -9.60813 -9.12668 -8.18766 -6.35076 -0.55568 0.03629 0.32639 0.67655 1.18161 1.42650 1.43792 1.51631 1.66401 2.03372 2.35553 2.49901 3.09243 3.11191 3.16159 3.85007 3.95024 4.13160 4.14093 4.32930 4.41880 4.58514 4.64203 4.69841 4.70017 4.71966 4.78306 4.83124 4.84889 4.95143 4.96378 4.97825 5.09090 5.21626 5.28215 5.32350 5.34386 5.35550 5.46337 5.58531 5.62142 5.90371 6.06720 6.27779 6.49950 6.67222 6.73237 6.87745 7.35341 8.85516 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002454 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.189729 B =11408.026216 C =11973.352848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.039 4.039 4 C 0.003 3.997 5 N -0.471 5.471 6 C 0.024 3.976 7 C -0.078 4.078 8 C -0.038 4.038 9 N -0.590 5.590 10 C 0.509 3.491 11 O -0.490 6.490 12 C 0.495 3.505 13 O -0.560 6.560 14 N -0.557 5.557 15 C 0.075 3.925 16 C 0.259 3.741 17 H 0.025 0.975 18 C -0.135 4.135 19 C -0.543 4.543 20 H 0.058 0.942 21 C 0.020 3.980 22 N -0.912 5.912 23 Si 0.964 3.036 24 H -0.281 1.281 25 H -0.278 1.278 26 H -0.265 1.265 27 S 0.230 5.770 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.435 0.565 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.075 0.925 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 -2.737 -10.502 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.079 4.079 4 C -0.275 4.275 5 N -0.185 5.185 6 C -0.112 4.112 7 C -0.137 4.137 8 C -0.255 4.255 9 N -0.238 5.238 10 C 0.291 3.709 11 O -0.366 6.366 12 C 0.276 3.724 13 O -0.441 6.441 14 N -0.287 5.287 15 C -0.067 4.067 16 C 0.158 3.842 17 H 0.043 0.957 18 C -0.194 4.194 19 C -0.582 4.582 20 H 0.077 0.923 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.789 3.211 24 H -0.207 1.207 25 H -0.203 1.203 26 H -0.190 1.190 27 S 0.484 5.516 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.276 0.724 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.445 -2.735 -9.641 24.581 hybrid contribution 1.837 0.713 -0.436 2.018 sum -20.608 -2.022 -10.077 23.029 Atomic orbital electron populations 1.21744 0.93603 1.02503 1.02697 1.21506 0.97306 0.94495 1.02186 1.20417 0.82903 0.99381 1.05232 1.27765 1.02964 1.04109 0.92660 1.66206 1.03392 1.16477 1.32456 1.20499 0.91397 1.06632 0.92689 1.20398 0.95274 1.03864 0.94184 1.23587 0.90167 1.14712 0.97042 1.42340 1.05667 1.68608 1.07186 1.20392 0.90201 0.77589 0.82733 1.90609 1.45489 1.47100 1.53382 1.19761 0.88293 0.80238 0.84099 1.90723 1.46228 1.51586 1.55536 1.48247 1.10329 1.65194 1.04913 1.22275 0.88435 1.02707 0.93246 1.18864 0.76328 0.95051 0.93964 0.95667 1.21924 1.03427 0.95075 0.98965 1.21448 0.98177 1.10935 1.27596 0.92333 1.25666 0.95557 0.98760 0.98019 1.69980 1.04009 1.36658 1.44370 0.85520 0.77408 0.79099 0.79073 1.20664 1.20328 1.18956 1.84772 0.92082 1.67915 1.06878 0.92035 0.91650 0.91993 0.92471 0.91945 0.88011 0.88378 0.89550 0.89496 0.90369 0.72353 0.92644 0.87732 0.90619 0.93273 0.95470 0.90618 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 3 C -0.04 -0.55 5.79 29.85 0.17 -0.38 16 4 C 0.00 0.06 6.63 88.53 0.59 0.64 16 5 N -0.47 -11.52 10.52 -178.85 -1.88 -13.40 16 6 C 0.02 0.58 6.77 41.71 0.28 0.87 16 7 C -0.08 -1.42 10.07 71.23 0.72 -0.71 16 8 C -0.04 -1.00 7.17 82.63 0.59 -0.41 16 9 N -0.59 -16.46 5.38 -307.35 -1.65 -18.11 16 10 C 0.51 16.77 7.73 87.21 0.67 17.45 16 11 O -0.49 -15.93 10.76 -3.46 -0.04 -15.96 16 12 C 0.49 20.07 7.73 87.21 0.67 20.75 16 13 O -0.56 -25.56 15.82 -3.32 -0.05 -25.61 16 14 N -0.56 -23.75 2.75 -828.60 -2.28 -26.03 16 15 C 0.08 2.64 8.75 127.77 1.12 3.76 16 16 C 0.26 13.02 2.63 44.25 0.12 13.14 16 17 H 0.03 1.48 6.90 -2.39 -0.02 1.46 16 18 C -0.14 -6.27 8.96 71.98 0.64 -5.63 16 19 C -0.54 -28.93 8.37 25.60 0.21 -28.71 16 20 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 21 C 0.02 1.09 5.30 84.65 0.45 1.54 16 22 N -0.91 -50.65 11.32 21.45 0.24 -50.41 16 23 Si 0.96 42.24 29.54 68.60 2.03 44.26 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 27 S 0.23 5.47 20.41 -56.49 -1.15 4.31 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.29 7.22 -2.39 -0.02 1.27 16 38 H 0.43 10.97 7.10 -92.71 -0.66 10.31 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.10 3.32 5.36 -2.48 -0.01 3.31 16 41 H 0.08 2.60 6.44 -2.39 -0.02 2.59 16 42 H 0.05 2.08 6.67 -2.39 -0.02 2.07 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.08 3.87 6.07 -2.39 -0.01 3.86 16 45 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -63.90 380.83 2.71 -61.19 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.36 Total: 19.43 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 7.14 Total: 20.33 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -5.57 Total: -107.95 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.09 Total: -41.58 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.15 Total: 4.31 kcal Total: -63.90 2.71 -61.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439320089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.611 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds