Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.50700 * 109.47146 * 240.00402 * 2 1 3 5 5 H 1.08002 * 119.99723 * 240.00327 * 4 2 1 6 6 C 1.37871 * 120.00058 * 59.99615 * 4 2 1 7 7 N 1.31514 * 120.00415 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46796 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47568 * 119.99701 * 8 6 4 11 11 H 1.48494 * 109.47280 * 240.00227 * 8 6 4 12 12 C 1.53003 * 109.47186 * 120.00054 * 2 1 3 13 13 N 1.46505 * 109.46973 * 299.99986 * 12 2 1 14 14 C 1.34768 * 119.99625 * 180.02562 * 13 12 2 15 15 O 1.21282 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99939 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47287 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.46707 * 305.00170 * 17 16 14 19 19 N 1.46494 * 109.46861 * 65.00126 * 17 16 14 20 20 C 1.34779 * 120.00026 * 206.14669 * 19 17 16 21 21 N 1.34780 * 120.00425 * 174.98337 * 20 19 17 22 22 O 1.21595 * 120.00011 * 354.98175 * 20 19 17 23 23 C 1.50699 * 109.47151 * 185.00292 * 17 16 14 24 24 C 1.33390 * 125.20262 * 105.12621 * 23 17 16 25 25 C 1.38425 * 114.91988 * 179.97438 * 24 23 17 26 26 C 1.33386 * 114.92094 * 0.02562 * 25 24 23 27 27 S 1.75881 * 125.20216 * 284.82063 * 23 17 16 28 28 H 1.09008 * 109.47040 * 300.00119 * 1 2 3 29 29 H 1.09000 * 109.47583 * 59.99333 * 1 2 3 30 30 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47103 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47201 * 299.99803 * 3 2 1 33 33 H 1.08999 * 109.47185 * 60.00664 * 3 2 1 34 34 H 0.97000 * 120.00162 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46747 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.46923 * 60.00144 * 12 2 1 37 37 H 0.96995 * 120.00180 * 0.02562 * 13 12 2 38 38 H 1.08997 * 109.46991 * 60.00489 * 16 14 13 39 39 H 1.08998 * 109.47539 * 300.00162 * 16 14 13 40 40 H 0.96998 * 120.00597 * 26.15001 * 19 17 16 41 41 H 0.97002 * 119.99603 * 359.97438 * 21 20 19 42 42 H 0.96993 * 120.00000 * 179.72742 * 21 20 19 43 43 H 1.08000 * 122.53824 * 359.97438 * 24 23 17 44 44 H 1.08001 * 122.53696 * 180.02562 * 25 24 23 45 45 H 1.08002 * 125.20447 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2875 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7807 16 6 1.3759 0.2199 4.9000 17 6 1.8869 -0.5007 6.1492 18 1 1.5988 -1.5511 6.1061 19 7 3.3468 -0.3968 6.2100 20 6 4.0627 -1.3350 6.8610 21 7 5.4096 -1.2957 6.8317 22 8 3.4934 -2.2169 7.4747 23 6 1.2864 0.1348 7.3767 24 6 0.3085 -0.3920 8.1151 25 6 -0.0816 0.3751 9.1994 26 6 0.5793 1.5251 9.3411 27 16 1.7732 1.6811 8.0589 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7088 1.1614 -3.4844 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7489 1.2492 37 1 0.9937 0.7578 2.3565 38 1 0.2859 0.2199 4.9004 39 1 1.7392 1.2476 4.8996 40 1 3.7984 0.3473 5.7818 41 1 5.8638 -0.5924 6.3419 42 1 5.9247 -1.9687 7.3035 43 1 -0.1447 -1.3448 7.8846 44 1 -0.8618 0.0659 9.8791 45 1 0.4101 2.2478 10.1256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = -66.540114 kcal Electronic energy + Delta-G solvation = -27242.568871 eV Core-core repulsion = 23385.526560 eV Total energy + Delta-G solvation = -3857.042310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31373 -40.39416 -38.79631 -38.10795 -36.24631 -34.94590 -34.66966 -32.83903 -31.77128 -29.97448 -27.53190 -27.46113 -26.87727 -25.33671 -23.58778 -22.19239 -21.41123 -20.57087 -20.31552 -19.20894 -18.89939 -18.15089 -17.72347 -17.45995 -16.72852 -16.57074 -16.44469 -16.30719 -15.82680 -15.60528 -15.18645 -14.90271 -14.71603 -14.51658 -14.02366 -13.98247 -13.62317 -13.47313 -13.28698 -13.14760 -13.07352 -12.97296 -12.65346 -12.57213 -12.48238 -12.22376 -12.13590 -11.64654 -11.45763 -11.43679 -11.24525 -10.83960 -10.69416 -10.64973 -10.39137 -10.12975 -9.87281 -9.57465 -9.29240 -8.02168 -6.17431 0.07797 0.74011 1.13071 1.40379 1.45248 1.53889 1.74414 1.80136 2.03205 2.24109 2.36102 2.50841 3.21586 3.62709 3.65303 3.68941 4.12067 4.24665 4.29999 4.48965 4.54303 4.61555 4.64046 4.72150 4.75327 4.80341 5.03851 5.09141 5.14004 5.21325 5.22707 5.40354 5.41328 5.45388 5.61998 5.64325 5.68494 5.70295 5.86495 6.05531 6.18576 6.24759 6.45316 6.73098 6.87565 7.07838 7.39396 7.50510 7.68749 8.96532 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.002523 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.316433 B =11097.031856 C =11982.338239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.151 3.849 13 N -0.709 5.709 14 C 0.504 3.496 15 O -0.580 6.580 16 C -0.136 4.136 17 C 0.259 3.741 18 H 0.078 0.922 19 N -0.720 5.720 20 C 0.707 3.293 21 N -0.851 5.851 22 O -0.641 6.641 23 C -0.199 4.199 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.215 4.215 27 S 0.119 5.881 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.260 0.740 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.410 0.590 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.406 0.594 41 H 0.411 0.589 42 H 0.419 0.581 43 H 0.137 0.863 44 H 0.157 0.843 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 7.399 22.193 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.027 3.973 13 N -0.361 5.361 14 C 0.291 3.709 15 O -0.460 6.460 16 C -0.176 4.176 17 C 0.150 3.850 18 H 0.096 0.904 19 N -0.375 5.375 20 C 0.405 3.595 21 N -0.419 5.419 22 O -0.523 6.523 23 C -0.318 4.318 24 C -0.168 4.168 25 C -0.174 4.174 26 C -0.351 4.351 27 S 0.383 5.617 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.247 0.753 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.242 0.758 41 H 0.242 0.758 42 H 0.251 0.749 43 H 0.155 0.845 44 H 0.175 0.825 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.909 7.251 22.164 23.398 hybrid contribution -0.308 -1.228 -1.124 1.693 sum 1.601 6.023 21.040 21.944 Atomic orbital electron populations 1.21681 0.97210 0.98539 1.00522 1.18347 0.93154 0.93149 0.90258 1.21660 0.97926 0.97649 1.00530 1.21318 1.31540 1.12035 0.91751 0.94028 1.25410 0.95197 0.95590 1.00844 1.69905 1.37030 1.23250 1.23485 0.85767 0.78128 0.78764 0.80495 1.20187 1.20846 1.20644 1.21187 0.96909 0.94813 0.84418 1.46112 1.52837 1.32011 1.05176 1.21032 0.80093 0.84455 0.85344 1.90727 1.39855 1.28096 1.87299 1.22057 1.05164 1.01434 0.88965 1.18608 0.78562 0.99002 0.88843 0.90360 1.44821 1.06316 1.27868 1.58508 1.16099 0.82805 0.81547 0.79057 1.42766 1.04184 1.35887 1.59100 1.90910 1.71316 1.39899 1.50179 1.24913 1.03393 1.00256 1.03242 1.20351 0.98787 1.01737 0.95890 1.20360 1.02982 0.94718 0.99330 1.25995 1.01455 1.03122 1.04503 1.83972 1.37855 1.17234 1.22668 0.94075 0.92027 0.96597 0.96260 0.92108 0.93995 0.93064 0.94368 0.94966 0.75299 0.84703 0.85239 0.75769 0.75833 0.74850 0.84511 0.82520 0.79590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.01 8.08 71.98 0.58 -4.43 16 4 C -0.53 -27.41 8.01 25.60 0.21 -27.21 16 5 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -46.95 9.35 21.45 0.20 -46.75 16 8 Si 0.94 42.16 29.54 68.60 2.03 44.19 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.15 6.07 4.50 86.38 0.39 6.46 16 13 N -0.71 -21.60 4.96 -463.06 -2.30 -23.90 16 14 C 0.50 14.63 7.69 87.66 0.67 15.30 16 15 O -0.58 -22.08 15.35 -3.03 -0.05 -22.13 16 16 C -0.14 -2.59 5.23 29.85 0.16 -2.44 16 17 C 0.26 6.03 1.94 44.25 0.09 6.11 16 18 H 0.08 2.42 7.39 -2.39 -0.02 2.40 16 19 N -0.72 -16.21 4.06 -461.41 -1.87 -18.08 16 20 C 0.71 19.25 8.80 179.05 1.58 20.83 16 21 N -0.85 -15.33 8.88 -184.73 -1.64 -16.97 16 22 O -0.64 -23.65 16.88 -4.01 -0.07 -23.72 16 23 C -0.20 -4.13 5.39 24.59 0.13 -4.00 16 24 C -0.14 -2.81 10.03 21.22 0.21 -2.60 16 25 C -0.14 -2.40 10.18 21.22 0.22 -2.18 16 26 C -0.22 -3.19 11.23 66.72 0.75 -2.44 16 27 S 0.12 1.93 23.17 -56.49 -1.31 0.62 16 28 H 0.04 1.43 6.86 -2.38 -0.02 1.41 16 29 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 30 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 2.88 6.07 -2.39 -0.01 2.86 16 33 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 34 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.41 10.49 6.16 -92.71 -0.57 9.92 16 38 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.41 6.96 8.63 -92.71 -0.80 6.16 16 41 H 0.41 4.79 8.85 -92.71 -0.82 3.97 16 42 H 0.42 6.65 8.93 -92.71 -0.83 5.82 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -71.98 383.22 -1.00 -72.97 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -1.96 Total: 30.76 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.97 Total: 3.01 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -5.61 Total: -105.70 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.11 Total: -45.85 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.31 Total: 0.62 kcal Total: -71.98 -1.00 -72.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.432 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds