Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 C 1.50701 * 109.47113 * 240.00234 * 2 1 3 5 5 H 1.07997 * 120.00208 * 240.00104 * 4 2 1 6 6 C 1.37873 * 119.99890 * 59.99977 * 4 2 1 7 7 N 1.31518 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99950 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47421 * 89.99935 * 8 6 4 10 10 H 1.48501 * 109.46888 * 210.00110 * 8 6 4 11 11 H 1.48496 * 109.46674 * 329.99692 * 8 6 4 12 12 C 1.52997 * 109.47391 * 120.00209 * 2 1 3 13 13 S 1.81405 * 109.47064 * 300.00109 * 12 2 1 14 14 O 1.42095 * 110.54093 * 68.37326 * 13 12 2 15 15 O 1.42102 * 110.54157 * 291.62144 * 13 12 2 16 16 N 1.65596 * 104.44797 * 179.97438 * 13 12 2 17 17 C 1.47425 * 125.64997 * 270.03870 * 16 13 12 18 18 C 1.54915 * 104.83334 * 204.09565 * 17 16 13 19 19 C 1.55165 * 101.57980 * 322.99105 * 18 17 16 20 20 C 1.47022 * 125.64668 * 90.00112 * 16 13 12 21 21 H 1.09001 * 110.01221 * 59.48483 * 20 16 13 22 22 C 1.50698 * 109.88394 * 298.38914 * 20 16 13 23 23 N 1.31797 * 119.12172 * 315.47183 * 22 20 16 24 24 C 1.32334 * 120.81620 * 179.76058 * 23 22 20 25 25 C 1.38602 * 119.10491 * 0.50009 * 24 23 22 26 26 C 1.38591 * 118.39918 * 359.75122 * 25 24 23 27 27 N 1.31802 * 119.12358 * 135.73657 * 22 20 16 28 28 H 1.09001 * 109.46894 * 299.99624 * 1 2 3 29 29 H 1.08994 * 109.46903 * 59.99586 * 1 2 3 30 30 H 1.08997 * 109.46826 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46840 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47280 * 300.00452 * 3 2 1 33 33 H 1.09001 * 109.46925 * 60.00394 * 3 2 1 34 34 H 0.97002 * 119.99786 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47524 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46836 * 59.99788 * 12 2 1 37 37 H 1.08997 * 110.36855 * 322.93307 * 17 16 13 38 38 H 1.08997 * 110.36655 * 85.26180 * 17 16 13 39 39 H 1.08995 * 111.00392 * 204.91661 * 18 17 16 40 40 H 1.09001 * 111.00387 * 81.05917 * 18 17 16 41 41 H 1.08993 * 110.71917 * 277.13865 * 19 18 17 42 42 H 1.09002 * 110.71751 * 153.86437 * 19 18 17 43 43 H 1.07996 * 120.45048 * 180.27700 * 24 23 22 44 44 H 1.08004 * 120.79877 * 179.77543 * 25 24 23 45 45 H 1.08005 * 120.45224 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7122 12 6 2.0401 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0281 -0.0184 2.8544 15 8 2.0481 1.4100 2.8544 16 7 2.0531 -0.7409 3.9935 17 6 1.3956 -1.8866 4.6481 18 6 2.0140 -1.9409 6.0674 19 6 3.4859 -1.5418 5.7814 20 6 3.3484 -0.5040 4.6474 21 1 3.3784 0.5038 5.0616 22 6 4.4654 -0.6821 3.6516 23 7 4.4382 -1.7165 2.8354 24 6 5.3991 -1.9029 1.9448 25 6 6.4478 -0.9985 1.8853 26 6 6.4441 0.0737 2.7634 27 7 5.4463 0.1978 3.6237 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7081 1.1609 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7489 1.2491 37 1 0.3198 -1.7225 4.7091 38 1 1.6097 -2.8075 4.1057 39 1 1.9555 -2.9477 6.4808 40 1 1.5354 -1.2197 6.7300 41 1 4.0614 -2.4048 5.4466 42 1 3.9417 -1.0914 6.6632 43 1 5.3686 -2.7501 1.2758 44 1 7.2483 -1.1262 1.1716 45 1 7.2446 0.7986 2.7456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907335249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -33.637420 kcal Electronic energy + Delta-G solvation = -29680.918877 eV Core-core repulsion = 25825.303334 eV Total energy + Delta-G solvation = -3855.615543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.12315 -39.37453 -38.24942 -38.20235 -37.00994 -34.70261 -33.68222 -33.44766 -31.96984 -29.80413 -28.40227 -27.80402 -27.29947 -25.51433 -25.14376 -23.06600 -22.16561 -21.33347 -20.03409 -19.08587 -18.61925 -17.99372 -17.66969 -17.27518 -16.97091 -16.71964 -16.42243 -15.99938 -15.86123 -15.28400 -14.90514 -14.71231 -14.55104 -14.49445 -14.42896 -14.16823 -13.94020 -13.57108 -13.27033 -13.17419 -12.93405 -12.85344 -12.79127 -12.65248 -12.59584 -12.29542 -12.17039 -12.09612 -12.05543 -11.80922 -11.79986 -11.62824 -11.59675 -11.43206 -10.74612 -10.50422 -10.45994 -10.22327 -10.00828 -8.06080 -6.25316 -0.75921 -0.12690 0.15890 1.42560 1.43621 1.52724 1.67181 2.41624 2.68615 2.74755 2.89112 2.98945 3.16378 3.27156 3.58845 3.76252 3.77340 3.95758 4.03674 4.09234 4.19763 4.21780 4.35360 4.46124 4.49251 4.63161 4.70705 4.74486 4.77472 4.85850 4.88203 4.92115 4.96813 4.98033 5.05569 5.15955 5.27187 5.33934 5.39892 5.42552 5.48922 5.58777 5.86064 6.03052 6.04048 6.28232 6.77999 7.08854 7.42766 8.94500 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.005245 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.708599 B = 5337.577523 C = 6531.086459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.072 3.928 3 C -0.152 4.152 4 C -0.513 4.513 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.264 1.264 12 C -0.567 4.567 13 S 2.615 3.385 14 O -0.983 6.983 15 O -0.988 6.988 16 N -1.000 6.000 17 C 0.101 3.899 18 C -0.112 4.112 19 C -0.103 4.103 20 C 0.212 3.788 21 H 0.094 0.906 22 C 0.270 3.730 23 N -0.515 5.515 24 C 0.131 3.869 25 C -0.214 4.214 26 C 0.133 3.867 27 N -0.530 5.530 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.192 0.808 44 H 0.184 0.816 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.831 -8.566 15.097 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.069 3.931 3 C -0.210 4.210 4 C -0.552 4.552 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.548 5.548 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.188 1.188 12 C -0.700 4.700 13 S 2.715 3.285 14 O -0.974 6.974 15 O -0.979 6.979 16 N -0.838 5.838 17 C -0.022 4.022 18 C -0.151 4.151 19 C -0.143 4.143 20 C 0.103 3.897 21 H 0.112 0.888 22 C 0.000 4.000 23 N -0.229 5.229 24 C -0.034 4.034 25 C -0.235 4.235 26 C -0.032 4.032 27 N -0.244 5.244 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.209 0.791 44 H 0.202 0.798 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.413 -7.502 15.668 19.758 hybrid contribution 1.172 -0.513 -2.311 2.641 sum 10.586 -8.015 13.357 18.833 Atomic orbital electron populations 1.22193 0.97625 1.00576 1.01201 1.17941 0.92381 0.91805 0.90933 1.22142 0.99004 0.98750 1.01122 1.21178 1.31787 1.12171 0.90063 0.91971 1.25711 0.95094 0.95606 1.01727 1.69944 1.37157 1.23747 1.23967 0.85562 0.79013 0.78217 0.78895 1.20293 1.21220 1.18799 1.30421 1.11113 1.13001 1.15453 1.04687 0.73821 0.74475 0.75506 1.93486 1.30643 1.87059 1.86196 1.93498 1.78550 1.39680 1.86139 1.58511 1.28516 1.47842 1.48925 1.22404 0.97548 0.87649 0.94637 1.22792 0.93399 1.04519 0.94422 1.22655 0.98809 0.97070 0.95719 1.20178 0.77324 1.02192 0.89982 0.88777 1.23737 0.94591 0.86978 0.94678 1.68224 1.27533 1.21440 1.05749 1.23855 0.87945 0.98681 0.92962 1.23351 1.02041 0.96395 1.01744 1.23886 0.94968 0.95941 0.88366 1.68185 1.03375 1.28155 1.24688 0.95483 0.90658 0.93919 0.95170 0.90595 0.95659 0.92822 0.86596 0.85128 0.90203 0.90142 0.86535 0.89550 0.89950 0.87458 0.79120 0.79848 0.78303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.26 7.78 71.98 0.56 -7.70 16 2 C 0.07 3.65 0.52 -52.93 -0.03 3.62 16 3 C -0.15 -8.08 7.78 71.98 0.56 -7.52 16 4 C -0.51 -27.22 8.01 25.60 0.21 -27.01 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.96 5.15 84.65 0.44 1.39 16 7 N -0.91 -50.98 9.35 21.45 0.20 -50.78 16 8 Si 0.96 41.93 29.54 68.60 2.03 43.96 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 C -0.57 -24.35 4.77 71.98 0.34 -24.01 16 13 S 2.61 110.03 4.40 -56.49 -0.25 109.78 16 14 O -0.98 -45.01 14.90 -127.65 -1.90 -46.92 16 15 O -0.99 -46.88 15.22 -127.65 -1.94 -48.82 16 16 N -1.00 -31.70 3.13 -488.11 -1.53 -33.23 16 17 C 0.10 2.41 7.07 86.86 0.61 3.03 16 18 C -0.11 -1.75 7.09 31.99 0.23 -1.52 16 19 C -0.10 -1.85 6.47 31.79 0.21 -1.64 16 20 C 0.21 5.91 3.14 44.60 0.14 6.05 16 21 H 0.09 2.79 8.13 -2.39 -0.02 2.77 16 22 C 0.27 8.03 5.96 138.75 0.83 8.86 16 23 N -0.51 -14.54 8.28 -187.84 -1.56 -16.10 16 24 C 0.13 3.06 10.77 84.70 0.91 3.97 16 25 C -0.21 -4.20 10.17 22.44 0.23 -3.97 16 26 C 0.13 2.99 11.30 84.70 0.96 3.95 16 27 N -0.53 -15.53 10.32 -187.84 -1.94 -17.47 16 28 H 0.03 1.36 5.46 -2.39 -0.01 1.35 16 29 H 0.07 4.22 6.07 -2.39 -0.01 4.20 16 30 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 4.30 6.07 -2.39 -0.01 4.29 16 33 H 0.02 1.30 5.46 -2.39 -0.01 1.29 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.12 4.82 5.70 -2.39 -0.01 4.80 16 36 H 0.13 5.18 8.14 -2.39 -0.02 5.16 16 37 H 0.08 1.97 7.67 -2.39 -0.02 1.95 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.45 7.84 -2.39 -0.02 1.43 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -74.52 362.06 0.29 -74.23 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 1.00 Total: 27.83 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 6.19 Total: -42.50 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.82 Total: -117.57 kcal Atomic # 8 Polarization: -91.89 SS G_CDS: -3.85 Total: -95.74 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 110.03 SS G_CDS: -0.25 Total: 109.78 kcal Total: -74.52 0.29 -74.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907335249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.590 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds