Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47108 * 2 1 4 4 C 1.50699 * 109.47333 * 119.99907 * 2 1 3 5 5 N 1.30946 * 122.90587 * 307.62360 * 4 2 1 6 6 C 1.29428 * 117.36672 * 180.30290 * 5 4 2 7 7 S 1.70949 * 110.38926 * 359.73458 * 6 5 4 8 8 C 1.35654 * 122.90712 * 127.42972 * 4 2 1 9 9 C 1.46685 * 126.12901 * 0.02562 * 8 4 2 10 10 O 1.21692 * 120.00111 * 357.36716 * 9 8 4 11 11 N 1.34773 * 120.00026 * 177.36228 * 9 8 4 12 12 C 1.46503 * 120.00067 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47313 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.77796 * 51.76585 * 13 12 11 15 15 C 1.54326 * 110.72198 * 288.52373 * 13 12 11 16 16 N 1.47023 * 107.26888 * 219.44469 * 15 13 12 17 17 C 1.36934 * 125.64795 * 178.98879 * 16 15 13 18 18 H 1.08005 * 119.99588 * 343.62164 * 17 16 15 19 19 C 1.38810 * 120.00505 * 163.62606 * 17 16 15 20 20 N 1.31624 * 119.99586 * 351.56513 * 19 17 16 21 21 Si 1.86799 * 120.00403 * 171.56951 * 19 17 16 22 22 H 1.48500 * 109.47071 * 94.94269 * 21 19 17 23 23 H 1.48497 * 109.47091 * 214.94349 * 21 19 17 24 24 H 1.48499 * 109.46843 * 334.94014 * 21 19 17 25 25 C 1.47423 * 108.70385 * 358.93643 * 16 15 13 26 26 C 1.54909 * 104.83579 * 24.13279 * 25 16 15 27 27 H 1.08997 * 111.04008 * 204.90369 * 26 25 16 28 28 O 1.42904 * 111.00405 * 81.05910 * 26 25 16 29 29 H 1.09003 * 109.47086 * 299.99740 * 1 2 3 30 30 H 1.09002 * 109.47354 * 59.99879 * 1 2 3 31 31 H 1.08999 * 109.46670 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47093 * 240.00417 * 2 1 3 33 33 H 1.09002 * 109.47112 * 300.00269 * 3 2 1 34 34 H 1.09001 * 109.47303 * 59.99799 * 3 2 1 35 35 H 1.08995 * 109.47236 * 179.97438 * 3 2 1 36 36 H 1.07995 * 124.80445 * 179.68811 * 6 5 4 37 37 H 0.97000 * 120.00223 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.46951 * 59.99778 * 12 11 9 39 39 H 1.08998 * 109.47371 * 300.00139 * 12 11 9 40 40 H 1.09001 * 109.88144 * 338.85743 * 15 13 12 41 41 H 1.08994 * 109.88222 * 100.02480 * 15 13 12 42 42 H 0.96994 * 119.99757 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.37144 * 265.28837 * 25 16 15 44 44 H 1.09007 * 110.36321 * 142.96973 * 25 16 15 45 45 H 0.96697 * 114.00012 * 67.80694 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6368 -0.4035 2.4404 6 6 2.1427 -1.0797 3.4212 7 16 3.2392 -2.2520 2.8333 8 6 2.9307 -1.7256 1.1802 9 6 3.5410 -2.2811 -0.0325 10 8 3.2146 -1.8590 -1.1262 11 7 4.4634 -3.2590 0.0645 12 6 5.0734 -3.8134 -1.1466 13 6 6.0794 -4.8993 -0.7598 14 1 5.6223 -5.6298 -0.0922 15 6 7.3332 -4.2760 -0.1108 16 7 8.4987 -5.0203 -0.6099 17 6 9.8053 -4.7662 -0.2885 18 1 10.0773 -3.8218 0.1596 19 6 10.7803 -5.7220 -0.5387 20 7 10.4326 -6.9303 -0.9282 21 14 12.5856 -5.2937 -0.3225 22 1 13.0327 -5.7036 1.0330 23 1 13.3899 -6.0082 -1.3461 24 1 12.7693 -3.8288 -0.4825 25 6 8.0277 -6.0864 -1.5126 26 6 6.6511 -5.5936 -2.0242 27 1 6.0234 -6.4315 -2.3273 28 8 6.8068 -4.6600 -3.0948 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.9062 -0.9247 4.4635 37 1 4.7239 -3.5952 0.9363 38 1 5.5865 -3.0204 -1.6906 39 1 4.2978 -4.2449 -1.7793 40 1 7.4144 -3.2266 -0.3942 41 1 7.2726 -4.3656 0.9737 42 1 11.1138 -7.5983 -1.1026 43 1 7.9164 -7.0237 -0.9673 44 1 8.7195 -6.2112 -2.3457 45 1 7.1614 -5.0480 -3.9065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958472309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -19.978398 kcal Electronic energy + Delta-G solvation = -27247.603957 eV Core-core repulsion = 23392.580714 eV Total energy + Delta-G solvation = -3855.023243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71697 -39.34765 -38.22544 -35.23846 -34.80420 -34.51925 -32.28968 -30.84197 -29.51589 -27.80083 -27.23425 -26.28367 -25.35851 -23.71482 -22.41591 -21.49582 -20.48897 -20.04865 -19.21141 -18.08938 -17.32562 -17.10718 -16.27783 -16.03207 -15.56854 -15.08873 -14.91948 -14.64141 -14.48611 -14.32548 -14.10382 -13.93591 -13.73447 -13.20963 -13.01289 -12.75422 -12.57479 -12.43881 -12.23653 -11.97793 -11.57075 -11.29374 -11.28901 -11.14550 -11.05042 -10.84037 -10.69598 -10.50128 -10.23797 -10.17208 -10.08095 -9.88360 -9.80870 -9.64760 -9.20892 -9.17916 -8.98230 -8.65588 -6.79402 -5.81829 -3.15845 0.00728 0.93473 1.30924 2.24155 3.03142 3.08873 3.35876 3.42231 3.44574 3.86924 4.43898 4.57116 4.64521 4.70806 4.77998 5.06591 5.08173 5.14250 5.25377 5.28843 5.34412 5.43405 5.56021 5.57115 5.69627 5.74877 5.82548 5.84089 5.96244 5.99715 6.05122 6.13350 6.24743 6.28634 6.37466 6.47882 6.60250 6.80995 7.24028 7.29092 7.39201 7.42861 7.69231 8.06840 8.14836 8.25653 9.12762 9.74793 10.43460 11.32000 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.002578 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.538421 B =10857.592617 C =11505.089622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.136 4.136 4 C 0.153 3.847 5 N -0.469 5.469 6 C 0.033 3.967 7 S 0.163 5.837 8 C -0.291 4.291 9 C 0.595 3.405 10 O -0.522 6.522 11 N -0.719 5.719 12 C 0.141 3.859 13 C -0.107 4.107 14 H 0.087 0.913 15 C 0.144 3.856 16 N -0.594 5.594 17 C -0.228 4.228 18 H 0.073 0.927 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.150 3.850 26 C 0.082 3.918 27 H 0.057 0.943 28 O -0.558 6.558 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.205 0.795 37 H 0.398 0.602 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.020 0.980 42 H 0.253 0.747 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.874 8.246 5.453 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.194 4.194 4 C 0.014 3.986 5 N -0.182 5.182 6 C -0.263 4.263 7 S 0.418 5.582 8 C -0.415 4.415 9 C 0.380 3.620 10 O -0.401 6.401 11 N -0.369 5.369 12 C 0.019 3.981 13 C -0.126 4.126 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.320 5.320 17 C -0.356 4.356 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.024 3.976 26 C 0.021 3.979 27 H 0.075 0.925 28 O -0.363 6.363 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.222 0.778 37 H 0.232 0.768 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -18.858 8.470 5.784 21.466 hybrid contribution 1.125 -0.153 -0.151 1.145 sum -17.733 8.317 5.633 20.380 Atomic orbital electron populations 1.21734 0.93846 1.01726 1.02095 1.20422 0.96314 0.96308 0.94063 1.21728 1.01075 0.94567 1.02024 1.20705 0.92129 0.92411 0.93315 1.66048 1.26031 1.27515 0.98641 1.28723 0.97804 0.96176 1.03587 1.84078 1.40971 1.35183 0.97983 1.25584 1.10620 1.07726 0.97563 1.16645 0.79144 0.79436 0.86735 1.90712 1.62150 1.60211 1.26985 1.46050 1.41464 1.38289 1.11089 1.21313 0.94944 0.96634 0.85244 1.22508 0.95794 0.97090 0.97201 0.89429 1.21348 0.86235 0.95303 0.95342 1.44264 1.00949 1.35604 1.51215 1.18986 0.81636 0.98778 1.36216 0.90875 1.24886 0.98384 0.95118 1.01826 1.69924 1.31908 1.02744 1.51994 0.86124 0.84716 0.77674 0.77394 1.21553 1.21602 1.20511 1.21997 0.90042 0.91233 0.94299 1.23222 0.98348 0.89987 0.86320 0.92483 1.86408 1.87506 1.38621 1.23764 0.92112 0.92076 0.93043 0.85519 0.91866 0.92426 0.92789 0.77825 0.76800 0.89827 0.91298 0.95413 0.96207 0.93688 0.94321 0.91826 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.07 37.16 0.34 -1.03 16 2 C -0.05 -0.59 3.14 -91.77 -0.29 -0.88 16 3 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 4 C 0.15 1.86 5.41 -83.89 -0.45 1.41 16 5 N -0.47 -5.18 10.24 -11.54 -0.12 -5.29 16 6 C 0.03 0.27 12.22 51.75 0.63 0.90 16 7 S 0.16 1.43 22.36 -107.50 -2.40 -0.97 16 8 C -0.29 -3.58 6.48 -37.10 -0.24 -3.82 16 9 C 0.60 8.55 7.78 -12.85 -0.10 8.45 16 10 O -0.52 -8.78 14.01 5.20 0.07 -8.71 16 11 N -0.72 -9.67 5.47 -61.62 -0.34 -10.01 16 12 C 0.14 2.15 4.50 -4.04 -0.02 2.13 16 13 C -0.11 -1.75 2.89 -88.78 -0.26 -2.01 16 14 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.14 2.91 6.75 -3.06 -0.02 2.89 16 16 N -0.59 -14.83 3.39 -170.07 -0.58 -15.41 16 17 C -0.23 -6.29 10.21 -15.06 -0.15 -6.44 16 18 H 0.07 1.99 7.84 -52.48 -0.41 1.58 16 19 C -0.01 -0.15 5.39 -17.43 -0.09 -0.24 16 20 N -0.92 -26.33 10.92 55.49 0.61 -25.72 16 21 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.41 5.09 -2.53 -0.01 3.40 16 26 C 0.08 1.43 4.17 -24.58 -0.10 1.33 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 O -0.56 -9.69 12.33 -35.23 -0.43 -10.12 16 29 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.13 1.74 4.97 -51.93 -0.26 1.48 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.40 4.68 7.66 -40.82 -0.31 4.36 16 38 H 0.08 1.48 7.52 -51.93 -0.39 1.09 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.59 7.68 -51.93 -0.40 0.19 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.04 0.95 7.94 -51.93 -0.41 0.54 16 44 H 0.06 1.60 7.35 -51.92 -0.38 1.22 16 45 H 0.37 5.16 9.12 45.56 0.42 5.57 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -33.15 379.62 -8.86 -42.01 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.93 Total: 6.72 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.43 Total: 4.99 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.43 Total: -56.43 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.36 Total: -18.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.40 Total: -0.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.15 -8.86 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958472309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.031 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds