Wall clock time and date at job start Sat Apr 11 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47597 * 2 1 4 4 C 1.50699 * 109.46762 * 120.00485 * 2 1 3 5 5 N 1.28649 * 124.72073 * 120.29085 * 4 2 1 6 6 C 1.33568 * 115.76669 * 180.18280 * 5 4 2 7 7 C 1.47260 * 123.14156 * 179.82989 * 6 5 4 8 8 O 1.21628 * 120.00172 * 179.73571 * 7 6 5 9 9 N 1.34781 * 120.00124 * 359.72961 * 7 6 5 10 10 C 1.46500 * 119.99697 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46719 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.64028 * 303.31454 * 11 10 9 13 13 C 1.54324 * 110.71890 * 66.45585 * 11 10 9 14 14 N 1.47020 * 107.39983 * 140.47837 * 13 11 10 15 15 C 1.36946 * 125.64749 * 181.10549 * 14 13 11 16 16 H 1.08000 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47087 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47426 * 119.99468 * 19 17 15 22 22 H 1.48497 * 109.47269 * 239.99725 * 19 17 15 23 23 C 1.47743 * 108.53125 * 1.18235 * 14 13 11 24 24 C 1.54909 * 104.83995 * 335.74644 * 23 14 13 25 25 H 1.09001 * 111.03628 * 155.18095 * 24 23 14 26 26 O 1.42891 * 111.00999 * 279.02161 * 24 23 14 27 27 C 1.35206 * 113.71335 * 359.56255 * 6 5 4 28 28 S 1.70771 * 124.72138 * 300.01695 * 4 2 1 29 29 H 1.09001 * 109.47231 * 300.00219 * 1 2 3 30 30 H 1.09000 * 109.47111 * 59.99588 * 1 2 3 31 31 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47231 * 239.99781 * 2 1 3 33 33 H 1.08994 * 109.47389 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47226 * 300.00341 * 3 2 1 35 35 H 1.09002 * 109.46814 * 60.00157 * 3 2 1 36 36 H 0.97000 * 119.99671 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47222 * 60.01303 * 10 9 7 38 38 H 1.08997 * 109.47438 * 300.00126 * 10 9 7 39 39 H 1.09002 * 109.88322 * 259.97367 * 13 11 10 40 40 H 1.09000 * 109.88025 * 20.98532 * 13 11 10 41 41 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.29227 * 216.94505 * 23 14 13 43 43 H 1.08996 * 110.53057 * 94.67717 * 23 14 13 44 44 H 0.96705 * 114.00245 * 292.19608 * 26 24 23 45 45 H 1.08006 * 125.58639 * 180.26264 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 2.7793 -1.7578 1.2182 6 6 3.1170 -2.2441 2.4154 7 6 3.9622 -3.4373 2.5905 8 8 4.2386 -3.8280 3.7087 9 7 4.4294 -4.0964 1.5117 10 6 5.2707 -5.2830 1.6860 11 6 5.6632 -5.8358 0.3143 12 1 4.7760 -6.0578 -0.2787 13 6 6.5838 -4.8459 -0.4301 14 7 7.6140 -5.6368 -1.1192 15 6 8.6371 -5.1293 -1.8750 16 1 8.7349 -4.0616 -2.0040 17 6 9.5477 -5.9875 -2.4760 18 7 9.4281 -7.2888 -2.3191 19 14 10.9428 -5.2954 -3.5075 20 1 10.8553 -3.8131 -3.5276 21 1 12.2435 -5.7069 -2.9209 22 1 10.8385 -5.8158 -4.8943 23 6 7.3579 -7.0687 -0.8604 24 6 6.5568 -7.0952 0.4652 25 1 5.9504 -7.9980 0.5379 26 8 7.4269 -6.9738 1.5922 27 6 2.6151 -1.5352 3.4516 28 16 1.6943 -0.2337 2.8350 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4423 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 4.2092 -3.7846 0.6200 37 1 4.7179 -6.0422 2.2392 38 1 6.1700 -5.0128 2.2394 39 1 6.0051 -4.2767 -1.1576 40 1 7.0525 -4.1677 0.2830 41 1 10.0646 -7.8884 -2.7388 42 1 8.2992 -7.6063 -0.7455 43 1 6.7695 -7.5039 -1.6681 44 1 8.0049 -7.7373 1.7269 45 1 2.7709 -1.7550 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958480779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:58 Heat of formation + Delta-G solvation = -23.678403 kcal Electronic energy + Delta-G solvation = -26967.134859 eV Core-core repulsion = 23111.951172 eV Total energy + Delta-G solvation = -3855.183687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62840 -39.00604 -38.07736 -35.86236 -34.86457 -34.47010 -32.13274 -30.38389 -29.67615 -27.79719 -27.63763 -26.29176 -25.20229 -23.86902 -22.56876 -20.98154 -20.45212 -19.89525 -19.45332 -18.46470 -17.27231 -16.84643 -16.22554 -16.00596 -15.58236 -15.40139 -14.82748 -14.66175 -14.63842 -14.11710 -14.00635 -13.75532 -13.49210 -13.37309 -13.04081 -12.68390 -12.60003 -12.29626 -12.27484 -12.10182 -11.89347 -11.66020 -11.38335 -11.33682 -11.22054 -10.80126 -10.61783 -10.35338 -10.29317 -10.09699 -10.00381 -9.90730 -9.82861 -9.78328 -9.18907 -9.07983 -8.80281 -8.66532 -6.81367 -5.67063 -3.06355 0.29159 0.95554 1.36353 1.83155 3.27308 3.35898 3.40003 3.45670 3.48073 3.66167 4.38269 4.48584 4.57189 4.63524 4.76867 4.92476 5.01725 5.09217 5.14307 5.19305 5.34448 5.35605 5.38216 5.44241 5.53476 5.54670 5.63484 5.70339 5.76068 5.78033 5.94268 6.08918 6.15143 6.37805 6.47260 6.55577 6.69711 6.90307 7.17637 7.30305 7.60253 7.66888 7.77241 8.24720 8.26853 8.39749 9.20614 9.82217 10.46947 11.38413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.002618 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.678886 B =10691.284896 C =12108.647586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.149 4.149 4 C 0.035 3.965 5 N -0.441 5.441 6 C 0.015 3.985 7 C 0.590 3.410 8 O -0.539 6.539 9 N -0.706 5.706 10 C 0.139 3.861 11 C -0.106 4.106 12 H 0.086 0.914 13 C 0.145 3.855 14 N -0.598 5.598 15 C -0.216 4.216 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.926 5.926 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.126 3.874 24 C 0.083 3.917 25 H 0.055 0.945 26 O -0.557 6.557 27 C -0.229 4.229 28 S 0.203 5.797 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.409 0.591 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.020 0.980 40 H 0.028 0.972 41 H 0.251 0.749 42 H 0.111 0.889 43 H 0.019 0.981 44 H 0.375 0.625 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.985 13.328 8.064 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 C -0.207 4.207 4 C -0.245 4.245 5 N -0.156 5.156 6 C -0.120 4.120 7 C 0.372 3.628 8 O -0.416 6.416 9 N -0.356 5.356 10 C 0.016 3.984 11 C -0.125 4.125 12 H 0.104 0.896 13 C 0.018 3.982 14 N -0.323 5.323 15 C -0.344 4.344 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.001 3.999 24 C 0.022 3.978 25 H 0.073 0.927 26 O -0.363 6.363 27 C -0.371 4.371 28 S 0.461 5.539 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.129 0.871 43 H 0.037 0.963 44 H 0.222 0.778 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.269 14.100 8.712 26.183 hybrid contribution 1.484 -0.970 -0.983 2.027 sum -18.785 13.130 7.728 24.187 Atomic orbital electron populations 1.21939 0.93059 1.02845 1.02770 1.19861 0.96116 0.95517 0.92838 1.21944 1.02111 0.93902 1.02748 1.27205 1.00499 0.97034 0.99766 1.66947 1.12195 1.10378 1.26074 1.20499 1.04023 1.00182 0.87290 1.17040 0.79300 0.81513 0.84903 1.90812 1.59258 1.67375 1.24204 1.45950 1.50950 1.29448 1.09259 1.21308 0.94352 0.85533 0.97221 1.22502 0.98017 0.96820 0.95178 0.89581 1.21298 0.89924 0.93144 0.93785 1.44420 1.28917 1.01194 1.57807 1.19142 1.01941 0.91929 1.21376 0.90430 1.24758 0.99520 0.95456 1.01110 1.69756 1.38049 1.01075 1.48654 0.85979 0.81916 0.77932 0.79583 1.20544 1.21758 1.21809 1.22624 1.00028 0.87188 0.90062 1.23188 0.91077 0.94712 0.88821 0.92740 1.86394 1.55177 1.46710 1.47974 1.26608 1.04089 1.00387 1.06011 1.82704 1.45302 1.25741 1.00184 0.92238 0.90965 0.91872 0.87673 0.91743 0.90946 0.92249 0.75530 0.91616 0.89904 0.96242 0.95425 0.93837 0.87095 0.96265 0.77835 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.09 37.16 0.34 -0.45 16 2 C -0.02 -0.15 3.34 -91.78 -0.31 -0.46 16 3 C -0.15 -0.86 9.09 37.15 0.34 -0.52 16 4 C 0.04 0.34 6.00 -13.61 -0.08 0.26 16 5 N -0.44 -5.61 10.12 -8.51 -0.09 -5.70 16 6 C 0.01 0.20 6.70 -84.53 -0.57 -0.36 16 7 C 0.59 9.63 7.80 -12.59 -0.10 9.53 16 8 O -0.54 -10.19 16.71 5.25 0.09 -10.10 16 9 N -0.71 -11.10 5.40 -61.43 -0.33 -11.43 16 10 C 0.14 2.36 4.59 -4.04 -0.02 2.34 16 11 C -0.11 -1.89 2.95 -88.78 -0.26 -2.16 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.14 3.12 6.52 -3.06 -0.02 3.10 16 14 N -0.60 -15.51 3.41 -169.81 -0.58 -16.09 16 15 C -0.22 -6.11 10.28 -15.05 -0.15 -6.27 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 18 N -0.93 -26.87 10.11 55.49 0.56 -26.30 16 19 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C 0.13 3.01 5.65 -2.35 -0.01 3.00 16 24 C 0.08 1.56 4.17 -24.58 -0.10 1.46 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 O -0.56 -10.57 12.22 -35.23 -0.43 -11.00 16 27 C -0.23 -2.55 10.62 29.65 0.31 -2.23 16 28 S 0.20 1.62 22.22 -107.50 -2.39 -0.77 16 29 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 36 H 0.41 6.03 7.85 -40.82 -0.32 5.71 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.62 7.44 -51.93 -0.39 1.23 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.03 0.63 7.76 -51.93 -0.40 0.23 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.11 2.95 5.89 -51.93 -0.31 2.64 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.37 5.80 9.12 45.56 0.42 6.21 16 45 H 0.19 1.90 8.03 -52.48 -0.42 1.48 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -34.11 382.77 -9.17 -43.28 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.02 Total: 8.28 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.73 Total: 6.77 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.44 Total: -59.52 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.34 Total: -21.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.39 Total: -0.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.11 -9.17 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958480779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.603 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds