Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47597 * 2 1 4 4 C 1.50699 * 109.46762 * 120.00485 * 2 1 3 5 5 N 1.28649 * 124.72073 * 120.29085 * 4 2 1 6 6 C 1.33568 * 115.76669 * 180.18280 * 5 4 2 7 7 C 1.47260 * 123.14156 * 179.82989 * 6 5 4 8 8 O 1.21628 * 120.00172 * 179.73571 * 7 6 5 9 9 N 1.34781 * 120.00124 * 359.72961 * 7 6 5 10 10 C 1.46500 * 119.99697 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46719 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.64028 * 303.31454 * 11 10 9 13 13 C 1.54324 * 110.71890 * 66.45585 * 11 10 9 14 14 N 1.47020 * 107.39983 * 140.47837 * 13 11 10 15 15 C 1.36946 * 125.64749 * 181.10549 * 14 13 11 16 16 H 1.08000 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47087 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47426 * 119.99468 * 19 17 15 22 22 H 1.48497 * 109.47269 * 239.99725 * 19 17 15 23 23 C 1.47743 * 108.53125 * 1.18235 * 14 13 11 24 24 C 1.54909 * 104.83995 * 335.74644 * 23 14 13 25 25 H 1.09001 * 111.03628 * 155.18095 * 24 23 14 26 26 O 1.42891 * 111.00999 * 279.02161 * 24 23 14 27 27 C 1.35206 * 113.71335 * 359.56255 * 6 5 4 28 28 S 1.70771 * 124.72138 * 300.01695 * 4 2 1 29 29 H 1.09001 * 109.47231 * 300.00219 * 1 2 3 30 30 H 1.09000 * 109.47111 * 59.99588 * 1 2 3 31 31 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47231 * 239.99781 * 2 1 3 33 33 H 1.08994 * 109.47389 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47226 * 300.00341 * 3 2 1 35 35 H 1.09002 * 109.46814 * 60.00157 * 3 2 1 36 36 H 0.97000 * 119.99671 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47222 * 60.01303 * 10 9 7 38 38 H 1.08997 * 109.47438 * 300.00126 * 10 9 7 39 39 H 1.09002 * 109.88322 * 259.97367 * 13 11 10 40 40 H 1.09000 * 109.88025 * 20.98532 * 13 11 10 41 41 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.29227 * 216.94505 * 23 14 13 43 43 H 1.08996 * 110.53057 * 94.67717 * 23 14 13 44 44 H 0.96705 * 114.00245 * 292.19608 * 26 24 23 45 45 H 1.08006 * 125.58639 * 180.26264 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 2.7793 -1.7578 1.2182 6 6 3.1170 -2.2441 2.4154 7 6 3.9622 -3.4373 2.5905 8 8 4.2386 -3.8280 3.7087 9 7 4.4294 -4.0964 1.5117 10 6 5.2707 -5.2830 1.6860 11 6 5.6632 -5.8358 0.3143 12 1 4.7760 -6.0578 -0.2787 13 6 6.5838 -4.8459 -0.4301 14 7 7.6140 -5.6368 -1.1192 15 6 8.6371 -5.1293 -1.8750 16 1 8.7349 -4.0616 -2.0040 17 6 9.5477 -5.9875 -2.4760 18 7 9.4281 -7.2888 -2.3191 19 14 10.9428 -5.2954 -3.5075 20 1 10.8553 -3.8131 -3.5276 21 1 12.2435 -5.7069 -2.9209 22 1 10.8385 -5.8158 -4.8943 23 6 7.3579 -7.0687 -0.8604 24 6 6.5568 -7.0952 0.4652 25 1 5.9504 -7.9980 0.5379 26 8 7.4269 -6.9738 1.5922 27 6 2.6151 -1.5352 3.4516 28 16 1.6943 -0.2337 2.8350 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4423 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 4.2092 -3.7846 0.6200 37 1 4.7179 -6.0422 2.2392 38 1 6.1700 -5.0128 2.2394 39 1 6.0051 -4.2767 -1.1576 40 1 7.0525 -4.1677 0.2830 41 1 10.0646 -7.8884 -2.7388 42 1 8.2992 -7.6063 -0.7455 43 1 6.7695 -7.5039 -1.6681 44 1 8.0049 -7.7373 1.7269 45 1 2.7709 -1.7550 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958480779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = -49.690898 kcal Electronic energy + Delta-G solvation = -26968.262846 eV Core-core repulsion = 23111.951172 eV Total energy + Delta-G solvation = -3856.311674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63978 -40.28703 -39.53382 -36.46008 -36.35178 -36.14986 -33.98553 -31.61434 -31.04455 -29.51846 -28.05005 -27.67156 -26.65945 -25.22698 -23.74637 -22.25614 -21.63814 -21.28013 -20.74320 -19.46687 -19.09014 -18.22761 -17.51158 -17.03792 -16.81372 -16.71627 -16.41026 -15.99554 -15.63561 -15.46658 -15.27376 -15.06599 -14.65414 -14.44772 -14.25587 -13.98663 -13.78594 -13.65402 -13.19781 -13.08252 -13.06438 -13.00895 -12.68051 -12.63026 -12.33077 -12.14588 -12.07219 -11.89082 -11.89008 -11.83869 -11.74091 -11.23628 -10.85946 -10.83131 -10.68663 -10.68213 -10.27341 -9.83617 -8.87898 -7.80714 -5.22920 -0.54450 0.21978 0.56659 0.85489 1.44901 1.45839 1.56086 2.10830 2.23712 2.47443 2.85169 3.25967 3.33928 3.56791 3.63901 3.85778 3.92736 3.94534 4.01067 4.10097 4.16107 4.18439 4.39976 4.47038 4.56963 4.60412 4.76391 4.77958 4.81353 4.88552 4.91562 4.95570 4.97453 5.16059 5.25461 5.31238 5.32627 5.36000 5.37820 5.48578 5.74967 6.23034 6.26933 6.55452 6.95556 7.03373 7.09341 7.75074 8.39005 9.22123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.002618 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.678886 B =10691.284896 C =12108.647586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.147 4.147 4 C 0.021 3.979 5 N -0.470 5.470 6 C -0.015 4.015 7 C 0.587 3.413 8 O -0.573 6.573 9 N -0.703 5.703 10 C 0.154 3.846 11 C -0.091 4.091 12 H 0.112 0.888 13 C 0.144 3.856 14 N -0.620 5.620 15 C -0.238 4.238 16 H 0.075 0.925 17 C -0.065 4.065 18 N -0.947 5.947 19 Si 0.979 3.021 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.127 3.873 24 C 0.095 3.905 25 H 0.093 0.907 26 O -0.569 6.569 27 C -0.240 4.240 28 S 0.297 5.703 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.010 0.990 41 H 0.248 0.752 42 H 0.081 0.919 43 H 0.003 0.997 44 H 0.389 0.611 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.014 15.078 8.270 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.045 4.045 3 C -0.205 4.205 4 C -0.259 4.259 5 N -0.185 5.185 6 C -0.150 4.150 7 C 0.372 3.628 8 O -0.453 6.453 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.110 4.110 12 H 0.130 0.870 13 C 0.019 3.981 14 N -0.346 5.346 15 C -0.367 4.367 16 H 0.092 0.908 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.808 3.192 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.002 3.998 24 C 0.035 3.965 25 H 0.110 0.890 26 O -0.377 6.377 27 C -0.383 4.383 28 S 0.556 5.444 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.021 0.979 44 H 0.238 0.762 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -22.326 15.872 8.915 28.807 hybrid contribution 2.061 -1.407 -1.024 2.698 sum -20.264 14.464 7.890 26.118 Atomic orbital electron populations 1.21946 0.91400 1.02743 1.04215 1.20007 0.97361 0.95840 0.91321 1.21958 1.01196 0.93120 1.04246 1.27759 0.99629 0.96445 1.02036 1.66919 1.13714 1.11934 1.25980 1.20199 1.05708 1.00414 0.88650 1.17443 0.79050 0.82041 0.84294 1.90776 1.60720 1.68576 1.25267 1.45874 1.50620 1.29151 1.09614 1.21019 0.93595 0.86201 0.96164 1.22442 0.97868 0.95278 0.95459 0.87045 1.21374 0.89652 0.93587 0.93510 1.44719 1.29401 1.02622 1.57836 1.19443 1.03079 0.92093 1.22056 0.90759 1.25567 1.01784 0.95900 1.02446 1.69987 1.38593 1.01912 1.49180 0.84991 0.78688 0.77748 0.77786 1.19529 1.21772 1.21575 1.22503 0.99156 0.85876 0.92273 1.23084 0.90617 0.96683 0.86158 0.88965 1.86379 1.55717 1.48064 1.47496 1.26916 1.03917 1.01336 1.06123 1.82333 1.42324 1.22449 0.97321 0.91048 0.89310 0.92742 0.88783 0.93204 0.89257 0.91002 0.74946 0.90544 0.92674 0.95590 0.97164 0.94230 0.90084 0.97883 0.76192 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.09 71.98 0.65 -0.51 16 2 C -0.02 -0.29 3.34 -11.54 -0.04 -0.33 16 3 C -0.15 -1.35 9.09 71.98 0.65 -0.70 16 4 C 0.02 0.37 6.00 88.57 0.53 0.90 16 5 N -0.47 -11.74 10.12 -180.84 -1.83 -13.57 16 6 C -0.01 -0.40 6.70 40.55 0.27 -0.13 16 7 C 0.59 19.41 7.80 86.61 0.68 20.08 16 8 O -0.57 -22.06 16.71 -4.12 -0.07 -22.13 16 9 N -0.70 -22.16 5.40 -466.52 -2.52 -24.68 16 10 C 0.15 5.17 4.59 86.38 0.40 5.57 16 11 C -0.09 -3.19 2.95 -9.60 -0.03 -3.22 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 C 0.14 6.29 6.52 86.73 0.57 6.86 16 14 N -0.62 -32.80 3.41 -691.17 -2.35 -35.15 16 15 C -0.24 -13.75 10.28 84.03 0.86 -12.89 16 16 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 17 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 18 N -0.95 -56.06 10.11 21.65 0.22 -55.84 16 19 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 C 0.13 6.15 5.65 86.79 0.49 6.64 16 24 C 0.10 3.51 4.17 31.99 0.13 3.65 16 25 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 26 O -0.57 -21.36 12.22 -148.98 -1.82 -23.18 16 27 C -0.24 -5.08 10.62 67.12 0.71 -4.36 16 28 S 0.30 3.95 22.22 -56.49 -1.26 2.70 16 29 H 0.07 0.40 7.91 -2.39 -0.02 0.38 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.47 7.92 -2.39 -0.02 0.45 16 36 H 0.41 12.21 7.85 -92.71 -0.73 11.48 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.05 2.18 7.44 -2.39 -0.02 2.17 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.01 0.48 7.76 -2.39 -0.02 0.47 16 41 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.08 4.43 5.89 -2.39 -0.01 4.42 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.39 11.88 9.12 -74.05 -0.68 11.20 16 45 H 0.19 3.74 8.03 -2.91 -0.02 3.72 16 Total: -1.00 -75.77 382.77 -1.63 -77.40 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.38 Total: 27.70 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.35 Total: 18.32 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.48 Total: -129.24 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -1.89 Total: -45.32 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.26 Total: 2.70 kcal Total: -75.77 -1.63 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958480779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.709 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds